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- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
- Fujita, S., et al.
(författare)
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Spatial and temporal variability of snow accumulation rate on the East Antarctic ice divide between Dome Fuji and EPICA DML
- 2011
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Ingår i: The Cryosphere. - : Copernicus GmbH. - 1994-0416 .- 1994-0424. ; 5:4, s. 1057-1081
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Tidskriftsartikel (refereegranskat)abstract
- To better understand the spatio-temporal variability of the glaciological environment in Dronning Maud Land (DML), East Antarctica, a 2800-km-long Japanese-Swedish traverse was carried out. The route includes ice divides between two ice-coring sites at Dome Fuji and EPICA DML. We determined the surface mass balance (SMB) averaged over various time scales in the late Holocene based on studies of snow pits and firn cores, in addition to radar data. We find that the large-scale distribution of the SMB depends on the surface elevation and continentality, and that the SMB differs between the windward and leeward sides of ice divides for strong-wind events. We suggest that the SMB is highly influenced by interactions between the large-scale surface topography of ice divides and the wind field of strong-wind events that are often associated with high-precipitation events. Local variations in the SMB are governed by the local surface topography, which is influenced by the bedrock topography. In the eastern part of DML, the accumulation rate in the second half of the 20th century is found to be higher by similar to 15% than averages over longer periods of 722 a or 7.9 ka before AD 2008. A similar increasing trend has been reported for many inland plateau sites in Antarctica with the exception of several sites on the leeward side of the ice divides.
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| 5. |
- Ogawa, Y., et al.
(författare)
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Relationship between auroral substorm and ion upflow in the nightside polar ionosphere
- 2013
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Ingår i: J GEOPHYS RES-SPACE. - 2169-9380. ; 118:11, s. 7426-7437
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Tidskriftsartikel (refereegranskat)abstract
- We investigated ionospheric ion upflow during an auroral substorm using simultaneous European Incoherent Scatter radar and IMAGE satellite data. Approximately 6 min after an initial brightening identified with data from the IMAGE wideband imaging camera instrument, ion upflow was seen and the electron temperature became enhanced, too. The ion upflow, with a velocity of about 150 m/s, and the electron temperature enhancement lasted for about 25 min. During the poleward expansion phase, surges of large upward ion velocity and flux, and high ion and electron temperatures occurred over Longyearbyen. The upward ion flux reached 2x10(14) m(-2)s(-1). Naturally enhanced ion-acoustic lines (NEIALs) were seen near the poleward edge of the expanded auroral oval both near the end of expansion phase 17 min after onset and also later in the recovery phase. The NEIALs seemed to be accompanied by another type of enhanced echoes, obliquely to the local geomagnetic field. Data from the Low Energy Neutral Atom instrument on the IMAGE satellite show that energetic neutral oxygen reaches the IMAGE satellite about 40 min after the initial brightening, and oxygen continues to get detected during the recovery phase. We propose that ion upflow at the poleward edge of the auroral oval during the expansion phase is related to ion/neutral outflow with energy below 18-27 eV, whereas during the recovery phase of a substorm upward ions are accelerated up to about 60 eV and flow out in the entire polar region.
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| 7. |
- Fujii, J., et al.
(författare)
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Identifying the Electronic Character and Role of the Mn States in the Valence Band of (Ga,Mn)As
- 2013
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Ingår i: Physical Review Letters. - 0031-9007 .- 1079-7114. ; 111:9, s. 097201-
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Tidskriftsartikel (refereegranskat)abstract
- We report high-resolution hard x-ray photoemission spectroscopy results on (Ga,Mn)As films as a function of Mn doping. Supported by theoretical calculations we identify, for both low (1%) and high (13%) Mn doping values, the electronic character of the states near the top of the valence band. Magnetization and temperature-dependent core-level photoemission spectra reveal how the delocalized character of the Mn states enables the bulk ferromagnetic properties of (Ga,Mn)As.
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