| 11. |
- Abbas, Abdul-Karim, 1959, et al.
(författare)
-
Bicarbonate-sensitive cysteine induced elevation of extracellular aspartate and glutamate in rat hippocampus in vitro
- 1997
-
Ingår i: Neurochemistry International. - 0197-0186. ; 30:3, s. 253-259
-
Tidskriftsartikel (refereegranskat)abstract
- The effect of different concentrations of cysteine (0.125, 0.25, 0.5 and 1 mM) on the net efflux of endogenous amino acids was studied by the incubation of rat hippocampal slices. Addition of cysteine (1 mM) in bicarbonate containing low K+ medium (5 min) selectively increased the basal net efflux of glutamate and aspartate by 370% and 396%, respectively. High K+ media (50 mM) containing cysteine (1 mM) evoked the net efflux of glutamate and aspartate by 1 454% and 1 019%, respectively. The corresponding effects in control slices without cysteine were 669% and 404%, respectively. No changes were observed on the concentrations of GABA, glutamine and taurine. The cysteine oxidation products, cysteine sulfinate (0.5 μM) and cystine (0.25 mM) were without effects. The effect of cysteine (0.5 mM) was dramatically reduced in media with no added bicarbonate/CO2. Thus, cysteine in a bicarbonate-sensitive manner selectively increases the extracellular concentration of excitotoxic amino acids in adult rat brain in vitro, possibly by interfering with the carrier-mediated glutamate uptake/ release
|
|
| 12. |
|
|
| 13. |
- Abbas, Zareen, 1962, et al.
(författare)
-
From restricted towards realistic models of salt solutions: Corrected Debye–Hückel theory and Monte Carlo simulations
- 2007
-
Ingår i: Journal of Mathematical Fluid Mechanics. - : Elsevier BV. - 1422-6952 .- 1422-6928 .- 0378-3812. ; 260:2, s. 233-247
-
Tidskriftsartikel (refereegranskat)abstract
- The properties of bulk salt solutions over wide concentration ranges are explored by a combination of simple physical theory and Monte Carlo (MC) simulations. The corrected Debye–Hückel (CDH) theory which incorporates ion size effects in a linear response approximation is extended to yield free energy and other thermodynamic properties by integration of the chemical potential over concentration. Charging integration which is usually used to obtain an electrostatic contribution of total free energy of electrolytes is avoided in this new direct approach. MC simulations are performed with a modified Widom particle insertion method, which also provides directly the ionic activity coefficients. The validity of the CDH theory is tested by comparison with the MC simulation data for 1:1, 2:1, 2:2 and 3:1 restricted primitive model (RPM) electrolytes over a wide concentration range and at various ion sizes. Mean ionic activity and osmotic coefficients calculated by the CDH theory in RPM approximation of electrolyte are fitted to experimental data by adjusting only a mean ionic diameter. Good fits up to 1 molal (m) concentration are obtained for a large number of salt solutions. MC simulations data for unrestricted primitive model (UPM) of 1:1 and 2:1 electrolytes are also fitted to the experimental data by varying the cation radius while keeping the anion radius fixed at a crystallographic value. The success of this approach is found to be salt specific. For example good fits up to 2 and 3.5 m concentrations were obtained for LiCl and LiBr, respectively. However in the case of less dissociated salts such as NaCl and KI the experimental data could only be fitted up to one molal concentration. Possibility of extending the applicability range of the CDH theory to concentrations >2 m is explored by including a concentration dependent dielectric constant as measured in experiments. Mean ionic activity coefficients for a number of salts could successfully be fitted up to 3 m concentration by adjusting only a mean ionic diameter. Difficulties encountered in simultaneously fitting the mean ionic activity and osmotic coefficients at salt concentrations >2 m are discussed.
|
|
| 14. |
- Abbas, Zareen, 1962, et al.
(författare)
-
Monte Carlo Simulations of Salt Solutions: Exploring the Validity of Primitive Models
- 2009
-
Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207. ; 113:17, s. 5905-5916
-
Tidskriftsartikel (refereegranskat)abstract
- An extensive series of Monte Carlo (MC) simulations were performed in order to explore the validity of simple primitive models of electrolyte solutions and in particular the effect of ion size asymmetry on the bulk thermodynamic properties of real salt solutions. Ionic activity and osmotic coefficients were calculated for 1:1, 2:1, and 3:1 electrolytes by using the unrestricted primitive model (UPM); i.e., ions are considered as charged hard spheres of different sizes dissolved in a dielectric continuum. Mean ionic activity and osmotic coefficients calculated by the MC simulations were fitted simultaneously to the experimental data by adjusting only the cation radius while keeping the anion radius fixed at its crystallographic value. Ionic radii were further optimized by systematically varying the cation and anion radii at a fixed sum of ionic radii. The success of this approach is found to be highly salt specific. For example, experimental data (mean ionic activity and osmotic coefficients) of salts which are usually considered as dissociated such as HCl, HBr, LiCl, LiBr, LiClO4, and KOH were successfully fitted up to 1.9, 2.5, 1.9, 3, 2.5, and 4.5 M concentrations, respectively. In the case of partially dissociated salts such as NaCl, the successful fits were only obtained in a more restricted concentration range. Consistent sets of the best fitted cation radii were obtained for acids, alkali, and alkaline earth halides. A list of recommended ionic radii is also provided. The reliability of the optimized ionic radii was further tested in simulations of the osmotic coefficients of LiCl−NaCl−KCl salt mixtures. A very good agreement between the simulated and experimental data was obtained up to ionic strength of 4.5 M.
|
|
| 15. |
|
|
| 16. |
- Abbas, Zareen, 1962, et al.
(författare)
-
Size-Dependent Surface Charging of Nanoparticles
- 2008
-
Ingår i: J of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 112:15, s. 5715-5723
-
Tidskriftsartikel (refereegranskat)abstract
- Experimental interest in the possible curvature dependence of particle charging in electrolyte solutions is subjected to theoretical analysis. The corrected Debye-Hückel theory of surface complexation (CDH-SC) and Monte Carlo (MC) simulation are applied to investigate the dependence of surface charging of metal oxide nanoparticles on their size. Surface charge density versus pH curves for spherical metal oxide nanoparticles in the size range of 1-100 nm are calculated at various concentrations of a background electrolyte. The surface charge density of a nanoparticle is found to be highly size-dependent. As the particle diameter drops to below 10 nm there is considerable increase in the surface charge density as compared with the limiting values seen for particles larger than 20 nm. This increase in the surface charge density is due to the enhanced screening efficiency of the electrolyte solution around small nanoparticles, which is most prominent for particles of diameters less than 5 nm. For example, the surface charge densities calculated for 2 nm particles at 0.1 M concentration are very close to the values obtained for 100 nm particles at 1 M concentration. These predictions of the dependence of surface charge density on particle size by the CDH-SC theory are in very good agreement with the corresponding results obtained by the MC simulations. A shift in the pH value of the point of zero charge toward higher pH values is also seen with a decreasing particle size.
|
|
| 17. |
- Abbas, Zareen, 1962, et al.
(författare)
-
Synthesis, characterization and particle size distribution of TiO2 colloidal nanoparticles
- 2011
-
Ingår i: Colloids and Surfaces A: Physicochemical and Engineering Aspects. - : Elsevier BV. - 0927-7757. ; 384:1-3, s. 254-261
-
Tidskriftsartikel (refereegranskat)abstract
- Nanoparticles of controlled size, well defined shape, pure phase and of clean surfaces are ideal model systems to investigate surface/interfacial reactions. In this study we have explored the possibility of synthesizing TiO2 nanoparticles in the size range of 7–20 nm under well controlled experimental conditions. A simple method based on the hydrolysis of TiCl4 was used to obtain particles having surfaces free from organics. Stable dispersions of TiO2 nanoparticles of various sizes were obtained by optimizing the reaction/dialysis time and temperature. The synthesized TiO2 particles were found to be predominantly of anatase phase and narrow particle size distributions were obtained. The TiO2 particles were characterized with respect to their phase, size and shape by X-ray diffraction (XRD) and transmission electron microscopy (TEM), respectively. Particle size distribution in a colloidal dispersion was obtained by the electrospray scanning mobility particle sizer (ES-SMPS) method and compared with an average particle size determined from dynamic light scattering (DLS). The average particle sizes obtained by the DLS and ES-SMPS methods were in good agreement, while a primary particle size of 4 nm was found in X-ray diffraction irrespective of the particle size in solution. Early stages of the nucleation process were monitored by the ES-SMPS method. These results show that small particles of 4–5 nm are initially formed and it is highly likely that large particles are formed due to aggregation of primary particles.
|
|
| 18. |
- Abbaspour, S., et al.
(författare)
-
Real-Time and Offline Evaluation of Myoelectric Pattern Recognition for the Decoding of Hand Movements
- 2021
-
Ingår i: Sensors. - : MDPI AG. - 1424-8220. ; 21:16
-
Tidskriftsartikel (refereegranskat)abstract
- Pattern recognition algorithms have been widely used to map surface electromyographic signals to target movements as a source for prosthetic control. However, most investigations have been conducted offline by performing the analysis on pre-recorded datasets. While real-time data analysis (i.e., classification when new data becomes available, with limits on latency under 200-300 milliseconds) plays an important role in the control of prosthetics, less knowledge has been gained with respect to real-time performance. Recent literature has underscored the differences between offline classification accuracy, the most common performance metric, and the usability of upper limb prostheses. Therefore, a comparative offline and real-time performance analysis between common algorithms had yet to be performed. In this study, we investigated the offline and real-time performance of nine different classification algorithms, decoding ten individual hand and wrist movements. Surface myoelectric signals were recorded from fifteen able-bodied subjects while performing the ten movements. The offline decoding demonstrated that linear discriminant analysis (LDA) and maximum likelihood estimation (MLE) significantly (p < 0.05) outperformed other classifiers, with an average classification accuracy of above 97%. On the other hand, the real-time investigation revealed that, in addition to the LDA and MLE, multilayer perceptron also outperformed the other algorithms and achieved a classification accuracy and completion rate of above 68% and 69%, respectively.
|
|
| 19. |
- Abbaszadehbanaeiyan, Amin, et al.
(författare)
-
Design and fabrication of high-throughput application-specific microfluidic devices for studying single-cell responses to extracellular perturbations
- 2013
-
Ingår i: Proc. SPIE 8765, Bio-MEMS and Medical Microdevices, 87650K. ; 8765
-
Konferensbidrag (refereegranskat)abstract
- Single cell analysis techniques provide a unique opportunity of determining the intercellular heterogeneity in a cell population, which due to genotype variations and different physiological states of the cells i.e. size, shape and age, cannot be retrieved from averaged cell population values. In order to obtain high-value quantitative data from single-cell experiments it is important to have experimental platforms enabling high-throughput studies. Here, we present a microfluidic chip, which is capable of capturing individual cells in suspension inside separate traps. The device consists of three adjacent microchannels with separate inlets and outlets, laterally connected through the V-shaped traps. Vshaped traps, with openings smaller than the size of a single cell, are fabricated in the middle (main) channel perpendicular to the flow direction. Cells are guided into the wells by streamlines of the flows and are kept still at the bottom of the traps. Cells can then be exposed to extracellular stimuli either in the main or the side channels. Microchannels and traps of different sizes can be fabricated in polydimethylsiloxane (PDMS), offering the possibility of independent studies on cellular responses with different cell types and different extracellular environmental changes. We believe that this versatile high-throughput cell trapping approach will contribute to further development of the current knowledge and information acquired from single-cell studies and provide valuable statistical experimental data required for systems biology. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
|
|
| 20. |
- Abbaszadehbanaeiyan, Amin, 1983, et al.
(författare)
-
Hydrodynamic Cell Trapping for High Throughput Single-Cell Applications
- 2013
-
Ingår i: Micromachines. - : MDPI AG. - 2072-666X. ; 4:4, s. 414-430
-
Tidskriftsartikel (refereegranskat)abstract
- The possibility to conduct complete cell assays under a precisely controlled environment while consuming minor amounts of chemicals and precious drugs have made microfluidics an interesting candidate for quantitative single-cell studies. Here, we present an application-specific microfluidic device, cellcomb, capable of conducting high-throughput single-cell experiments. The system employs pure hydrodynamic forces for easy cell trapping and is readily fabricated in polydimethylsiloxane (PDMS) using soft lithography techniques. The cell-trapping array consists of V-shaped pockets designed to accommodate up to six Saccharomyces cerevisiae (yeast cells) with the average diameter of 4 μm. We used this platform to monitor the impact of flow rate modulation on the arsenite (As(III)) uptake in yeast. Redistribution of a green fluorescent protein (GFP)-tagged version of the heat shock protein Hsp104 was followed over time as read out. Results showed a clear reverse correlation between the arsenite uptake and three different adjusted low = 25 nL min−1, moderate = 50 nL min−1, and high = 100 nL min−1 flow rates. We consider the presented device as the first building block of a future integrated application-specific cell-trapping array that can be used to conduct complete single cell experiments on different cell types.
|
|
