| 1. |
- Baev, Alexander, et al.
(författare)
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Theoretical Simulations of clamping levels in optical power limiting
- 2006
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207 .- 1520-5215. ; 110:42, s. 20912-20916
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Tidskriftsartikel (refereegranskat)abstract
- Multiphysics modeling, combining quantum mechanical and classical wave mechanical theories, of clamping levels has been performed for a platinum(II) organic compound in a sol-gel glass matrix. A clamping level of 2.5 mu J is found for a pulse duration of 10 ns. The excited-state absorption in the triplet manifold is shown to be crucial for clamping to occur.
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| 2. |
- Malysheva, Lyuba, et al.
(författare)
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Molecular Orientation in Helical and All-Trans Oligo(ethylene glycol)-Terminated Assemblies on Gold: Results of ab Initio Modeling
- 2005
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Ingår i: Journal of Physical Chemistry A. - : American Chemical Society (ACS). - 1089-5639 .- 1520-5215 .- 1520-6106 .- 1520-5207. ; 109:34, s. 7788-7796
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Tidskriftsartikel (refereegranskat)abstract
- The structural properties of self-assembled monolayers (SAMs) of oligo(ethylene glycol) (OEG)-terminated and amide-containing alkanethiols (HS(CH2)15CONH(CH2CH2O)6H and related molecules with shorter alkyl or OEG portions) on gold are addressed. Optimized geometry of the molecular constituents, characteristic vibration frequencies, and transition dipole moments are obtained using density-functional theory methods with gradient corrections. These data are used to simulate IR reflection-absorption (RA) spectra associated with different OEG conformations. It is shown that the positions and relative intensities of all characteristic peaks in the fingerprint region are accurately reproduced by the model spectra within a narrow range of the tilt and rotation angles of the alkyl plane, which turns out to be nearly the same for the helical and all-trans OEG conformations. In contrast, the tilt of the OEG axis changes considerably under conformational transition from helical to all-trans OEG. By means of ab initio modeling, we also clarify other details of the molecular structure and orientation, including lateral hydrogen bonding, the latter of which is readily possessed by the SAMs in focus. These results are crucial for understanding phase and folding characteristics of OEG SAMs and other complex molecular assemblies. They are also expected to contribute to an improved understanding of the interaction with water, ions, and ultimately biological macromolecules.
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| 3. |
- Abbas, Zareen, 1962, et al.
(författare)
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Monte Carlo Simulations of Salt Solutions: Exploring the Validity of Primitive Models
- 2009
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207. ; 113:17, s. 5905-5916
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Tidskriftsartikel (refereegranskat)abstract
- An extensive series of Monte Carlo (MC) simulations were performed in order to explore the validity of simple primitive models of electrolyte solutions and in particular the effect of ion size asymmetry on the bulk thermodynamic properties of real salt solutions. Ionic activity and osmotic coefficients were calculated for 1:1, 2:1, and 3:1 electrolytes by using the unrestricted primitive model (UPM); i.e., ions are considered as charged hard spheres of different sizes dissolved in a dielectric continuum. Mean ionic activity and osmotic coefficients calculated by the MC simulations were fitted simultaneously to the experimental data by adjusting only the cation radius while keeping the anion radius fixed at its crystallographic value. Ionic radii were further optimized by systematically varying the cation and anion radii at a fixed sum of ionic radii. The success of this approach is found to be highly salt specific. For example, experimental data (mean ionic activity and osmotic coefficients) of salts which are usually considered as dissociated such as HCl, HBr, LiCl, LiBr, LiClO4, and KOH were successfully fitted up to 1.9, 2.5, 1.9, 3, 2.5, and 4.5 M concentrations, respectively. In the case of partially dissociated salts such as NaCl, the successful fits were only obtained in a more restricted concentration range. Consistent sets of the best fitted cation radii were obtained for acids, alkali, and alkaline earth halides. A list of recommended ionic radii is also provided. The reliability of the optimized ionic radii was further tested in simulations of the osmotic coefficients of LiCl−NaCl−KCl salt mixtures. A very good agreement between the simulated and experimental data was obtained up to ionic strength of 4.5 M.
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| 4. |
- Abdurrokhman, Iqbaal, 1991, et al.
(författare)
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Protic Ionic Liquids Based on the Alkyl-Imidazolium Cation: Effect of the Alkyl Chain Length on Structure and Dynamics
- 2019
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-5207 .- 1520-6106. ; 123:18, s. 4044-4054
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Tidskriftsartikel (refereegranskat)abstract
- Protic ionic liquids are known to form extended hydrogen-bonded networks that can lead to properties different from those encountered in the aprotic analogous liquids, in particular with respect to the structure and transport behavior. In this context, the present paper focuses on a wide series of 1-alkyl-imidazolium bis(trifluoromethylsulfonyl)imide ionic liquids, [HC n Im][TFSI], with the alkyl chain length (n) on the imidazolium cation varying from ethyl (n = 2) to dodecyl (n = 12). A combination of several methods, such as vibrational spectroscopy, wide-angle X-ray scattering (WAXS), broadband dielectric spectroscopy, and 1 H NMR spectroscopy, is used to understand the correlation between local cation-anion coordination, nature of nanosegregation, and transport properties. The results indicate the propensity of the -NH site on the cation to form stronger H-bonds with the anion as the alkyl chain length increases. In addition, the position and width of the scattering peak q 1 (or the pre-peak), resolved by WAXS and due to the nanosegregation of the polar from the nonpolar domains, are clearly dependent on the alkyl chain length. However, we find no evidence from pulsed-field gradient NMR of a proton motion decoupled from molecular diffusion, hypothesized to be facilitated by the longer N-H bonds localized in the segregated ionic domains. Finally, for all protic ionic liquids investigated, the ionic conductivity displays a Vogel-Fulcher-Tammann dependence on inverse temperature, with an activation energy E a that also depends on the alkyl chain length, although not strictly linearly.
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| 5. |
- Acebes, S., et al.
(författare)
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Mapping the Long-Range Electron Transfer Route in Ligninolytic Peroxidases
- 2017
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-5207 .- 1520-6106. ; 121:16, s. 3946-3954
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Tidskriftsartikel (refereegranskat)abstract
- Combining a computational analysis with site-directed mutagenesis, we have studied the long-range electron transfer pathway in versatile and lignin peroxidases, two enzymes of biotechnological interest that play a key role for fungal degradation of the bulky lignin molecule in plant biomass. The in silico study established two possible electron transfer routes starting at the surface tryptophan residue previously identified as responsible for oxidation of the bulky lignin polymer. Moreover, in both enzymes, a second buried tryptophan residue appears as a top electron transfer carrier, indicating the prevalence of one pathway. Site-directed mutagenesis of versatile peroxidase (from Pleurotus eryngii) allowed us to corroborate the computational analysis and the role played by the buried tryptophan (Trp244) and a neighbor phenylalanine residue (Phe198), together with the surface tryptophan, in the electron transfer. These three aromatic residues are highly conserved in all the sequences analyzed (up to a total of 169). The importance of the surface (Trp171) and buried (Trp251) tryptophan residues in lignin peroxidase has been also confirmed by directed mutagenesis of the Phanerochaete chrysosporium enzyme. Overall, the combined procedure identifies analogous electron transfer pathways in the long-range oxidation mechanism for both ligninolytic peroxidases, constituting a good example of how computational analysis avoids making extensive trial-error mutagenic experiments.
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| 6. |
- Acke, Filip, 1968, et al.
(författare)
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Role of adsorbed surface oxygen in the adsorption of NO on alkaline earth oxides and Pt-promoted CaO surfaces
- 1999
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Ingår i: Journal of Physical Chemistry B Materials. - : American Chemical Society (ACS). - 1089-5647 .- 1520-6106 .- 1520-5207. ; 103:6, s. 972-978
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Tidskriftsartikel (refereegranskat)abstract
- Adsorbed surface oxygens are formed on CaO, SrO, and BaO during exposure to N2O, and their presence is shown to affect the room-temperature NO adsorption. Information about the adsorbed intermediates is contained in the desorption products and in the desorption temperatures during the subsequent heating ramp in Ar. The presence of adsorbed oxygen species increases the total amount of adsorbed NO for CaO and BaO substrates, whereas for SrO the adsorbed intermediate is stabilized. Two NO desorption peaks are found for CaO and SrO, one at low and one at high temperature. The former is assigned to adsorbed NO, whereas the latter is assigned to adsorbed -NO2 and/or -NO3 species. NO adsorption as -NO2 and/or -NO3 species finds evidence in the corresponding O2 desorption. Only one NO desorption peak is found for BaO. This NO desorption peak disappears in the absence of preadsorbed surface oxygens. O2 desorption is observed, even in the absence of any preadsorbed surface oxygens, for CaO and SrO substrates. This suggests NO bond dissociation upon NO adsorption. The effect of the promotion of CaO by Pt has also been investigated. The respective desorption profiles are similar to those for the unpromoted CaO with preadsorbed surface oxygens, although the amounts are significantly increased.
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| 7. |
- Acke, Filip, et al.
(författare)
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Study of the reduction and reoxidation of a CaO surface
- 1997
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Ingår i: J Phys Chem B. - 1520-5207 .- 1520-6106. ; 101:33
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Tidskriftsartikel (refereegranskat)abstract
- The reduction of NO with CO and H2 is shown to comprise two basic reactions: a surface oxygen abstraction by the reducing agent and a reoxidation of the surface by NO. The former reaction step has been demonstrated by transient CO2 formation during CO exposure of oxidized CaO surfaces, while the latter was demonstrated by N2 and/or N2O transient formation during NO exposure of a prereduced CaO surface. It was shown that at low temperatures (between room temperature and 500 °C) both N2 and N2O were formed, but at temperatures above 500 °C only N2 was observed. The activation energies of the respective steps have been determined using temperature-programmed reaction experiments. The activation energy of the surface oxygen abstraction was determined to be 25 kcal/mol and is similar to the apparent activation energy of the overall reaction. The activation energy of the NO bond breakage was determined to be maximum 10 kcal/mol as measured by N2O formation. The importance of an N2O2- or N2O22- intermediate in the formation of N2O will be discussed, and the importance of N2O decomposition in forming N2 at temperatures above 500 °C will be compared with a N surface diffusion mechanism.
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| 8. |
- Adebahr, J, et al.
(författare)
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Ion and solvent dynamics in gel electrolytes based on ethylene oxide grafted acrylate polymers
- 2002
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Ingår i: The Journal of Physical Chemistry Part B. - : American Chemical Society (ACS). - 1520-5207 .- 1520-6106 .- 1089-5647. ; 106:47, s. 12119-12123
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Tidskriftsartikel (refereegranskat)abstract
- Multinuclear pulsed field gradient NMR measurements and theological viscosity measurements were performed on three series of polymer gel electrolytes. The gels were based on a lithium salt electrolyte swollen into a copolymer matrix comprising an acrylate backbone and ethylene oxide side chains. In each series the side chains differed in length and number, but the acrylate-to-ethylene oxide ratio was kept constant. It was found that the self-diffusion coefficient of the cations was much lower than that of the anions, and that it decreased rapidly when the side chains got longer. In contrast, the self-diffusion coefficient of the anions was found to be independent of chain length. In the gel electrolytes, the diffusion coefficients of the solvent molecules are relatively constant despite an increased viscosity with increasing length of the side chains. However, in saltfree gels made for comparison, the diffusion coefficients of the solvent molecules decreased with, increasing length of the side chains, which is consistent with an increased viscosity.
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| 9. |
- Agrell, H. G., et al.
(författare)
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Conductivity studies of nanostructured TiO2 films permeated with electrolyte
- 2004
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207. ; 108:33, s. 12388-12396
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Tidskriftsartikel (refereegranskat)abstract
- Charge transport in nanostructured TiO2 films permeated with an electrolyte was studied, using temperature-dependent conductivity and electron accumulation measurements. Two regions for charge transport were distinguished from the relationship between conductivity and electron concentration. In the first region (similar to1-20 electrons per TiO2 particle), the effective electron mobility is dependent on the electron concentration and values between 7 x 10(-4) and 78 x 10(-4) cm(2) V-1 s(-1) were determined. The activation energy of the mobility was similar to0.3 eV. The charge transport can be described with a trapping/detrapping model that involves localized band-gap states. In the second region (> 20 electrons per TiO2 particle), the effective electron mobility is independent of electron concentration and values of similar to150 x 10(-4) cm(2) V-1 s(-1) are calculated. The activation energy of mobility is in the range of 0-0.15 eV, depending on the electrolyte. Transport of electrons in the conduction band seems to be the most applicable model.
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| 10. |
- Agzenai, Y, et al.
(författare)
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In Situ X-ray Polymerization: From Swollen Lamellae to Polymer-Surfactant Complexes
- 2014
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Ingår i: The Journal of Physical Chemistry Part B. - : American Chemical Society (ACS). - 1520-5207 .- 1520-6106. ; 118:4, s. 1159-1167
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Tidskriftsartikel (refereegranskat)abstract
- The influence of the monomer diallyldimethylammonium chloride (D) on the lamellar liquid crystal formed by the anionic surfactant aerosol OT (AOT) and water is investigated, determining the lamellar spacings by SAXS and the quadrupolar splittings by deuterium NMR, as a function of the D or AOT concentrations. The cationic monomer D induces a destabilization of the AOT lamellar structure such that, at a critical concentration higher than 5 wt %, macroscopic phase separation takes place. When the monomer, which is dissolved in the AOT lamellae, is polymerized in situ by X-ray initiation, a new collapsed lamellar phase appears, corresponding to the complexation of the surfactant with the resulting polymer. A theoretical model is employed to analyze the variation of the interactions between the AOT bilayers and the stability of the lamellar structure.
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