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- Höök, Fredrik, 1966, et al.
(författare)
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Characterization of PNA and DNA Immobilization and Subsequent Hybridization with DNA Using Acoustic-Shear-Wave Attenuation Measurements
- 2001
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Ingår i: Langmuir. - : American Chemical Society (ACS). - 1520-5827 .- 0743-7463. ; 17:26, s. 8305-8312
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Tidskriftsartikel (refereegranskat)abstract
- We report here how the quartz crystal microbalance with dissipation monitoring (QCM-D) technique, simultaneously measuring changes in the induced energy dissipation, D (cf. viscoelastic properties), and the frequency, f (cf. coupled mass), can be used to characterize the bound state of single-stranded peptide nucleic acid (PNA) and deoxyribose nucleic acid (DNA) in relation to their ability to function as selective probe(s) for fully complementary and single-mismatch DNA. The possibility to use the QCM-D technique for detection of binding kinetics and structural differences in the formed duplexes is also presented. We found that thiol-PNA and thiol-DNA attached via a sulfur group directly on a bare-gold surface are less efficient as probes for DNA than are biotin-PNA and biotin-DNA, coupled on top of a two-dimensional (2-D) arrangement of streptavidin, formed on a biotinylated phospholipid bilayer on a SiO2 surface. The fully complementary and singly mismatched DNA oligomers hybridize with the immobilized PNA and DNA. A single mismatch is discriminated via a significant difference in the binding and dissociation kinetics, demonstrating a high selectivity and thus successful immobilization of functional single strands. The observed ratios between hybridization-induced energy dissipation (DeltaD) and the frequency shift (Deltaf) made it possible to discriminate thiol-PNA directly attached to a gold surface from biotin-PNA coupled to the streptavidin 2-D arrangement, where the former were shown to be inefficient for detecting subsequent hybridization. Structural differences of the immobilized layers composed of biotin-PNA-DNA and biotin-DNA-DNA were clearly reflected by the DeltaD and Deltaf response.
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| 2. |
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| 3. |
- Tjerneld, F., et al.
(författare)
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Linear Dichroism of Chloroplasts and Subchloroplast Fractions Oriented by Flow
- 1977
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Ingår i: Spectroscopy Letters. - : Informa UK Limited. - 1532-2289 .- 0038-7010. ; 10:6, s. 489-493
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Tidskriftsartikel (refereegranskat)abstract
- Chloroplasts as well as subchloroplast vesicles show linear dichroism (LD) when subjected to a hydrodynamic gradient. LD is positive for the ππ in-plane polarized bands indicating that the chlorophyll porphyrin ring is in average oriented parallel1 to the elongated membrane surfaces. The vesicle fraction enriched inphotosystem I1 shows lower LD/A at 660 nm indicating lower average orientation of chlorophyll and the fraction enriched in photosystem I shows higher LD/A at 700 nm indicating that P700 is more oriented than the bulk chlorophyll.
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| 4. |
- Wittung Stafshede, Pernilla, 1968, et al.
(författare)
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Detection of point mutations in DNA by PNA-based quartz-crystal biosensor
- 2000
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Ingår i: Colloids and Surfaces A: Physicochemical and Engineering Aspects. - 1873-4359 .- 0927-7757. ; 174:1-2, s. 269-273
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Tidskriftsartikel (refereegranskat)abstract
- Currently there is an extensive search for biosensors for detecting genetic defects by hybridisation to immobilised oligonucleotides. A concept able to detect a single mismatch in a 15mer single-strand target of the p53 tumor suppresser gene is presented (a mutation found in many types of cancer cells). In this method, the unique hybridisation properties of the DNA mimic peptide nucleic acid (PNA) are combined with electronically detected mass and shear dissipation at the surface of a quartz crystal. Cysteine-labeled PNA efficiently immobilises on crystal-gold surface at 20 degrees C. At 60 degrees C, addition of complementary DNA results in a signal response corresponding to hybridisation between DNA and the PNA-covered surface, whereas addition of DNA differing in only one of the 15 bases gives no response at all.
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| 5. |
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| 6. |
- Albinsson, Bo, 1963, et al.
(författare)
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ELECTRONIC-TRANSITION MOMENT DIRECTIONS AND IDENTIFICATION OF LOW-ENERGY N-PI-ASTERISK STATES IN WEAKLY PERTURBED PURINE CHROMOPHORES
- 1993
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Ingår i: Journal of the American Chemical Society. - : American Chemical Society (ACS). - 1520-5126 .- 0002-7863. ; 115:1, s. 223-231
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Tidskriftsartikel (refereegranskat)abstract
- Measurements of UV linear dichroism on purine and three methyl derivatives partially oriented in poly(vinyl alcohol) matrix gave direct evidence for the assignment of the first singlet npi* state. Intensity distributions and moment directions for the first three pi --> pi* transitions were also determined. The pi --> pi* transitions in purine were found to be polarized at (angles, relative to the pseudo-symmetry long axis, counted positive in the N7 direction): -31-degrees +/- 5-degrees (II at 265 nm), +38-degrees +/- 5-degrees (III at 244 nm), and +36-degrees +/- 10-degrees (IV at 214 nm). The transition energies and moment directions were not markedly perturbed by methyl substitution at the sixth, seventh, or ninth position. Therefore, these methyl substituents could be used as orientational perturbers to resolve a sign ambiguity problem regarding transition moment directions. The orientation were determined by infrared dichroic measurements using both in-plane and out-of-plane polarized vibrational transitions. In addition, the phosphorescence spectra were studied, including phosphorescence anisotropy, phosphorescence lifetimes, and quantum yields, for the purines in an organic glass at 80 K. Based on these measurements, the lowest triplet state is concluded to have effectively pipi* character, and its emission allowedness appears to originate from spin-orbit interactions primarily with singlet sigmapi* states but also with singlet pipi* states via vibronic mixing. The phosphorescence emission spectra of purine and 6-methylpurine are complex, compared to 7-methylpurine and 9-methylpurine, with emission wavelength-dependent lifetimes and excitation spectra. This is ascribed to a prototropic tautomeric equilibrium between the 7H and 9H forms of purine and 6-methylpurine, a ground-state heterogeneity that we believe has caused confusion in earlier studies and, e.g., led to an assignment of the phosphorescence origin of purine.
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| 7. |
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| 8. |
- Albinsson, Bo, 1963, et al.
(författare)
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EXCITED-STATE PROPERTIES OF THE INDOLE CHROMOPHORE - ELECTRONIC-TRANSITION MOMENT DIRECTIONS FROM LINEAR DICHROISM MEASUREMENTS - EFFECT OF METHYL AND METHOXY SUBSTITUENTS
- 1992
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Ingår i: Journal of Physical Chemistry. - : American Chemical Society (ACS). - 0022-3654 .- 1541-5740. ; 96:15, s. 6204-6212
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Tidskriftsartikel (refereegranskat)abstract
- From measurements of UV and IR linear dichroism on molecules partially oriented in stretched polyethylene host the transition moment directions for the first four pi-pi* transitions of indole and some indole derivatives were determined. Relative to the pseudosymmetry long axis of indole, the transitions were normally found to be polarized at (angles counted away from the ring nitrogen): +42 +/- 50-degrees (1A1 --> 1L(by) at 287 nm), -46 +/- 5-degrees (1A1 --> 1L(a) at 265 nm), 0 +/- 15-degrees (1A1 --> 1B(by) at 220 nm), and for the 1A1 --> 1B(a) transition occurring around 200 nm, at least at +/- 30-degrees away from this axis. In addition, indication for a weak, essentially short axis polarized transition was found at 235 nm, possibly due to the 1A1 --> 1C transition. An ambiguity problem regarding the sign of the angles was resolved by exploiting the change of orientation properties upon introduction of substituents. Orientation parameters (including diagonalizing angle) were determined by consideration of a large number of in-plane as well as out-of-plane polarized vibrational transitions. The question regarding effects on the excited states by the presence of methyl and methoxy substituents, at varied positions in the indole chromophore, was addressed in terms of the perturbations they caused on the transition moments. Whereas none of the four transitions was found to be very sensitive in this respect to methyl or methoxy groups introduced in 2-, 3-, 5-, or 7-position of indole, the directions of the weak 1A1 --> 1L(by) but also the strong 1A1 --> 1B(by) transition were found to become significantly altered by a methoxy group in 4- as well as 6-position. The conclusions are consistent with recent fluorescence anisotropy data and semiempirical calculations.
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| 9. |
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| 10. |
- Albinsson, Bo, 1963, et al.
(författare)
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Polarized Spectroscopy with Fluorescent Biomolecular Building Blocks
- 2016
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Ingår i: Fluorescent Analogues of Biomolecular Building Blocks: Design and Applications: Design and Applications (eds M. Wilhelmsson and Y. Tor). - Hoboken, NJ, USA : John Wiley & Sons, Inc. - 9781118175866 ; , s. 40-54
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- © 2016 by John Wiley & Sons, Inc. All rights reserved. This chapter considers linear dichroism (LD), magnetic circular dichroism (MCD), and Forster resonance energy transfer (FRET) and how these phenomena are related to and may report on transition moment orientations and on molecular structure. MCD is an asset in combination with LD and fluorescence anisotropy for the deciphering of transition moment directions in biophysically important chromophores, and many examples of applications are found among nucleobases. A property corresponding to the absorption anisotropy (linear dichroism) for emission is the fluorescence anisotropy. The amino acid tryptophan, with indole as its photoactive aromatic chromophore, is the most frequently used natural fluorescent probe in biophysical contexts, due to its relatively high fluorescence quantum yield and well-resolved absorption profile in the near-UV. The single-molecule fluorescence-detected linear dichroism (smFLD) method is a useful complement to smFRET since it can help to avoid misinterpretation of false smFRET signals.
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