| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
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| 3. |
- Bandopadhayay, Pratiti, et al.
(författare)
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BET Bromodomain Inhibition of MYC-Amplified Medulloblastoma
- 2014
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Ingår i: Clinical Cancer Research. - 1078-0432 .- 1557-3265. ; 20:4, s. 912-925
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Tidskriftsartikel (refereegranskat)abstract
- Purpose:MYC-amplified medulloblastomas are highly lethal tumors. Bromodomain and extraterminal (BET) bromodomain inhibition has recently been shown to suppress MYC-associated transcriptional activity in other cancers. The compound JQ1 inhibits BET bromodomain-containing proteins, including BRD4. Here, we investigate BET bromodomain targeting for the treatment of MYC-amplified medulloblastoma.Experimental Design:We evaluated the effects of genetic and pharmacologic inhibition of BET bromodomains on proliferation, cell cycle, and apoptosis in established and newly generated patient- and genetically engineered mouse model (GEMM)-derived medulloblastoma cell lines and xenografts that harbored amplifications of MYC or MYCN. We also assessed the effect of JQ1 on MYC expression and global MYC-associated transcriptional activity. We assessed the in vivo efficacy of JQ1 in orthotopic xenografts established in immunocompromised mice.Results:Treatment of MYC-amplified medulloblastoma cells with JQ1 decreased cell viability associated with arrest at G1 and apoptosis. We observed downregulation of MYC expression and confirmed the inhibition of MYC-associated transcriptional targets. The exogenous expression of MYC from a retroviral promoter reduced the effect of JQ1 on cell viability, suggesting that attenuated levels of MYC contribute to the functional effects of JQ1. JQ1 significantly prolonged the survival of orthotopic xenograft models of MYC-amplified medulloblastoma (P < 0.001). Xenografts harvested from mice after five doses of JQ1 had reduced the expression of MYC mRNA and a reduced proliferative index.Conclusion:JQ1 suppresses MYC expression and MYC-associated transcriptional activity in medulloblastomas, resulting in an overall decrease in medulloblastoma cell viability. These preclinical findings highlight the promise of BET bromodomain inhibitors as novel agents for MYC-amplified medulloblastoma.
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| 4. |
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| 5. |
- Sun, Huiliang, et al.
(författare)
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A monothiophene unit incorporating both fluoro and ester substitution enabling high-performance donor polymers for non-fullerene solar cells with 16.4% efficiency
- 2019
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Ingår i: Energy & Environmental Science. - : ROYAL SOC CHEMISTRY. - 1754-5692 .- 1754-5706. ; 12:11, s. 3328-3337
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Tidskriftsartikel (refereegranskat)abstract
- Thiophene and its derivatives have been extensively used in organic electronics, particularly in the field of polymer solar cells (PSCs). Significant research efforts have been dedicated to modifying thiophene-based units by attaching electron-donating or withdrawing groups to tune the energy levels of conjugated materials. Herein, we report the design and synthesis of a novel thiophene derivative, FE-T, featuring a monothiophene functionalized with both an electron-withdrawing fluorine atom (F) and an ester group (E). The FE-T unit possesses distinctive advantages of both F and E groups, the synergistic effects of which enable significant downshifting of the energy levels and enhanced aggregation/crystallinity of the resulting organic materials. Shown in this work are a series of polymers obtained by incorporating the FE-T unit into a PM6 polymer to fine-tune the energetics and morphology of this high-performance PSC material. The optimal polymer in the series shows a downshifted HOMO and an improved morphology, leading to a high PCE of 16.4% with a small energy loss (0.53 eV) enabled by the reduced non-radiative energy loss (0.23 eV), which are among the best values reported for non-fullerene PSCs to date. This work shows that the FE-T unit is a promising building block to construct donor polymers for high-performance organic photovoltaic cells.
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| 6. |
- Tang, Xiaopeng, et al.
(författare)
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A novel framework for Lithium-ion battery modeling considering uncertainties of temperature and aging
- 2019
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Ingår i: Energy Conversion and Management. - : Elsevier BV. - 0196-8904. ; 180, s. 162-170
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Tidskriftsartikel (refereegranskat)abstract
- Temperature and cell aging are two major factors that influence the reliability and safety of Li-ion batteries. A general battery model considering both temperature and degradation is often difficult to develop, given the fact that there are many different types of cells with different shapes and/or internal chemical components. In response, a migration-based framework is proposed in this paper for battery modeling, in which the effects of temperature and aging are treated as uncertainties. An accurate model for a fresh cell is established first and then migrated to the degraded batteries through a Bayes Monte Carlo method. Experiments are carried out on both LiFePO4 batteries and Li(Ni1/3Co1/3Mn1/3) O2 batteries under various ambient temperatures and aging levels. The results indicate that the typical voltage prediction error can be limited within ±20 mV, for the cases of temperature change up to 40 °C, and capacity degradation up to 20%. The proposed method paves ways to an effective battery management and energy control for electric vehicles or micro grid applications.
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| 7. |
- Tang, Xiaopeng, et al.
(författare)
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Run-to-Run Control for Active Balancing of Lithium Iron Phosphate Battery Packs
- 2020
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Ingår i: IEEE Transactions on Power Electronics. - 0885-8993 .- 1941-0107. ; 35:2, s. 1499-1512
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Tidskriftsartikel (refereegranskat)abstract
- © 1986-2012 IEEE. Lithium iron phosphate battery packs are widely employed for energy storage in electrified vehicles and power grids. However, their flat voltage curves rendering the weakly observable state of charge are a critical stumbling block for charge equalization management. This paper focuses on the real-time active balancing of series-connected lithium iron phosphate batteries. In the absence of accurate in situ state information in the voltage plateau, a balancing current ratio (BCR) based algorithm is proposed for battery balancing. Then, BCR-based and voltage-based algorithms are fused, responsible for the balancing task within and beyond the voltage plateau, respectively. The balancing process is formulated as a batch-based run-to-run control problem, as the first time in the research area of battery management. The control algorithm acts in two timescales, including timewise control within each batch run and batchwise control at the end of each batch. Hardware-in-the-loop experiments demonstrate that the proposed balancing algorithm is able to release 97.1% of the theoretical capacity and can improve the capacity utilization by 5.7% from its benchmarking algorithm. Furthermore, the proposed algorithm can be coded in C language with the binary code in 118 328 bytes only and, thus, is readily implementable in real time.
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