| 1. |
- Fiz-Palacios, Omar, et al.
(författare)
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Did terrestrial diversification of amoebas (Amoebozoa) occur in synchrony with land plants?
- 2013
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 8:9, s. e74374-
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Tidskriftsartikel (refereegranskat)abstract
- Evolution of lineage diversification through time is an active area of research where much progress has been made in the last decade. Contrary to the situation in animals and plants little is known about how diversification rates have evolved in most major groups of protist. This is mainly due to uncertainty about phylogenetic relationships, scarcity of the protist fossil record and the unknown diversity within these lineages. We have analyzed the evolutionary history of the supergroup Amoebozoa over the last 1000 million years using molecular dating and species number estimates. After an origin in the marine environment we have dated the colonization of terrestrial habitats by three distinct lineages of Amoebozoa: Dictyostelia, Myxogastria and Arcellinida. The common ancestor of the two sister taxa, Dictyostelia and Myxogastria, appears to have existed before the colonization of land by plants. In contrast Arcellinida seems to have diversify in synchrony with land plant radiation, and more specifically with that of mosses. Detection of acceleration of diversification rates in Myxogastria and Arcellinida points to a co-evolution within the terrestrial habitats, where land plants and the amoebozoans may have interacted during the evolution of these new ecosystems.
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| 2. |
- Leebens-Mack, James H., et al.
(författare)
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One thousand plant transcriptomes and the phylogenomics of green plants
- 2019
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Ingår i: Nature. - : Nature Publishing Group. - 0028-0836 .- 1476-4687. ; 574:7780, s. 679-
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Tidskriftsartikel (refereegranskat)abstract
- Green plants (Viridiplantae) include around 450,000-500,000 species(1,2) of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we sequenced the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta). Our analysis provides a robust phylogenomic framework for examining the evolution of green plants. Most inferred species relationships are well supported across multiple species tree and supermatrix analyses, but discordance among plastid and nuclear gene trees at a few important nodes highlights the complexity of plant genome evolution, including polyploidy, periods of rapid speciation, and extinction. Incomplete sorting of ancestral variation, polyploidization and massive expansions of gene families punctuate the evolutionary history of green plants. Notably, we find that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns. The increasing availability of high-quality plant genome sequences and advances in functional genomics are enabling research on genome evolution across the green tree of life.
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| 3. |
- Li, Fay-Wei, et al.
(författare)
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Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
- 2014
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 111:18, s. 6672-6677
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Tidskriftsartikel (refereegranskat)abstract
- Ferns are well known for their shade-dwelling habits. Their ability to thrive under low-light conditions has been linked to the evolution of a novel chimeric photoreceptor-neochrome-that fuses red-sensing phytochrome and blue-sensing phototropin modules into a single gene, thereby optimizing phototropic responses. Despite being implicated in facilitating the diversification of modern ferns, the origin of neochrome has remained a mystery. We present evidence for neochrome in hornworts (a bryophyte lineage) and demonstrate that ferns acquired neochrome from hornworts via horizontal gene transfer (HGT). Fern neochromes are nested within hornwort neochromes in our large-scale phylogenetic reconstructions of phototropin and phytochrome gene families. Divergence date estimates further support the HGT hypothesis, with fern and hornwort neochromes diverging 179 Mya, long after the split between the two plant lineages (at least 400 Mya). By analyzing the draft genome of the hornwort Anthoceros punctatus, we also discovered a previously unidentified phototropin gene that likely represents the ancestral lineage of the neochrome phototropin module. Thus, a neochrome originating in hornworts was transferred horizontally to ferns, where it may have played a significant role in the diversification of modern ferns.
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| 4. |
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| 6. |
- Schmidt, Alexander R., et al.
(författare)
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Selaginella in Cretaceous amber from Myanmar
- 2022
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Ingår i: Willdenowia. - : BioOne. - 0511-9618 .- 1868-6397. ; 52:2, s. 179-245
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Tidskriftsartikel (refereegranskat)abstract
- Selaginella (Selaginellales, Selaginellaceae) is the most speciose genus of lycophytes and, with approximately 750 recognized present-day species, also one of the largest genera of vascular plants. However, the evolutionary history of this species richness remains largely unresolved. Recent research suggests that Selaginella was diverse already in the mid-Cretaceous and shows that S. subg. Stachygynandrum dates back at least to the incipient Angiosperm Terrestrial Revolution some 100 million years ago. Here, we describe 20 new fossil-species of Selaginella based on fertile shoots and spores preserved in mid-Cretaceous Kachin amber from Myanmar and emend the previously described S. cretacea. Ten of the species (S. ciliifera, S. cretacea, S. grimaldii, S. heterosporangiata, S. longifimbriata, S. minutissima, S. ohlhoffiorum, S. patrickmuelleri, S. villosa, S. wangxinii) represent S. subg. Stachygynandrum because they possess anisophyllous strobili. The other eleven species have isophyllous strobili. Two of them (S. isophylla, S. wunderlichiana) are tentatively assigned to S. subg. Ericetorum, whereas the others (S. amplexicaulis, S. aurita, S. heinrichsii, S. konijnenburgiae, S. obscura, S. ovoidea, S. pellucida, S. tomescui, S. wangboi) cannot be placed into any fossil or extant subgenus. The fossils described in this study nearly duplicate the documented record of free-sporing plants from Kachin amber. The abundance and diversity of cryptogams, along with the absence of xerophytes among the taxa, is suggestive of constantly high humidity in the understory of the source forests of this amber.
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| 7. |
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| 8. |
- Schuettpelz, Eric, et al.
(författare)
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A community-derived classification for extant lycophytes and ferns
- 2016
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Ingår i: Journal of Systematics and Evolution. - : Wiley. - 1674-4918 .- 1759-6831. ; 54:6, s. 563-603
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Tidskriftsartikel (refereegranskat)abstract
- Phylogeny has long informed pteridophyte classification. As our ability to infer evolutionary trees has improved, classifications aimed at recognizing natural groups have become increasingly predictive and stable. Here, we provide a modern, comprehensive classification for lycophytes and ferns, down to the genus level, utilizing a community-based approach. We use monophyly as the primary criterion for the recognition of taxa, but also aim to preserve existing taxa and circumscriptions that are both widely accepted and consistent with our understanding of pteridophyte phylogeny. In total, this classification treats an estimated 11 916 species in 337 genera, 51 families, 14 orders, and two classes. This classification is not intended as the final word on lycophyte and fern taxonomy, but rather a summary statement of current hypotheses, derived from the best available data and shaped by those most familiar with the plants in question. We hope that it will serve as a resource for those wanting references to the recent literature on pteridophyte phylogeny and classification, a framework for guiding future investigations, and a stimulus to further discourse.
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| 9. |
- Smith, Alan R., et al.
(författare)
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Selaginella pectinata resurrected : The correct name for an unusual endemic spikemoss from Madagascar
- 2016
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Ingår i: American Fern Journal. - : American Fern Society. - 0002-8444 .- 1938-422X. ; 106:2, s. 131-134
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Tidskriftsartikel (refereegranskat)abstract
- We review the nomenclature of Selaginella polymorpha Badre, endemic to Madagascar, and conclude that this name is illegitimate by superfluity under the International Code of Nomenclature. The name should be rejected and replaced by the older S. pectinata Spring, coined in 1843.
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| 10. |
- Weststrand, Stina, et al.
(författare)
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A subgeneric classification of Selaginella (Selaginellaceae)
- 2016
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Ingår i: American Journal of Botany. - : Wiley. - 0002-9122 .- 1537-2197. ; 103:12, s. 2160-2169
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Tidskriftsartikel (refereegranskat)abstract
- PREMISE OF THE STUDY: The lycophyte family Selaginellaceae includes approximately 750 herbaceous species worldwide, with the main species richness in the tropics and subtropics. We recently presented a phylogenetic analysis of Selaginellaceae based on DNA sequence data and, with the phylogeny as a framework, the study discussed the character evolution of the group focusing on gross morphology. Here we translate these findings into a new classification.METHODS: To present a robust and useful classification, we identified well-supported monophyletic groups from our previous phylogenetic analysis of 223 species, which together represent the diversity of the family with respect to morphology, taxonomy, and geographical distribution. Care was taken to choose groups with supporting morphology.KEY RESULTS: In this classification, we recognize a single genus Selaginella and seven subgenera: Selaginella, Rupestrae, Lepidophyllae, Gymnogynum, Exaltatae, Ericetorum, and Stachygynandrum. The subgenera are all well supported based on analysis of DNA sequence data and morphology. A key to the subgenera is presented.CONCLUSIONS: Our new classification is based on a well-founded hypothesis of the evolutionary relationships of Selaginella, and each subgenus can be identified by a suite of morphological features, most of them possible to study in the field. Our intention is that the classification will be useful not only to experts in the field, but also to a broader audience.
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