| 1. |
- Goicoechea, Noemi, et al.
(författare)
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Recovering phylogenetic signal from frog mating calls
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:2, s. 141-154
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Tidskriftsartikel (refereegranskat)abstract
- Few studies have tried to analyse the phylogenetic information contained in frog mating calls. While some of those studies suggest that sexual selection deletes any phylogenetic signal, others indicate that frog calls do retain phylogenetic informative characters. Discordant results can be the outcome of disparate rates of character evolution and evolutionary plasticity of call characters in different groups of frogs, but also the result of applying different coding methods. No study to date has compared the relative performance of different coding methods in detecting phylogenetic signal in calls, hampering thus potential consilience between previous results. In this study, we analyse the strength of phylogenetic signal in 10 mating call characters of 11 related species of frogs belonging to three genera of Andean and Amazonian frogs (Anura: Terrarana: Strabomantidae). We use six quantitative characters (number of notes per call, note length, call length, number of pulses per note, fundamental frequency and dominant frequency) and four qualitative ones (presence/absence of: pseudopulses, frequency modulation in notes, amplitude modulation in notes and amplitude modulation in pulses). We code quantitative characters using four different coding and scaling methods: (i) gap-coding, (ii) fixed-scale, (iii) step-matrix gap-weighting with between-characters scaling, and (iv) step-matrix gap-weighting with between-states scaling. All four coding methods indicate that frog calls contain phylogenetic information. These results suggest that divergent selection on frog mating calls may not always be strong enough to eliminate phylogenetic signal. However, coding methods strongly affect the amount of recoverable information. Step-matrix gap-weighting with between-characters scaling and gap-coding are suggested as the best methods available for coding quantitative characters of frog calls. Also, our results indicate that the arbitrariness in selecting character states and the method for scaling transitions weights, rather than the number of character states, is what potentially biases phylogenetic analyses with quantitative characters.
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| 2. |
- Koehler, Joern, et al.
(författare)
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Systematics of Andean gladiator frogs of the Hypsiboas pulchellus species group (Anura, Hylidae)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:6, s. 572-590
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Tidskriftsartikel (refereegranskat)abstract
- We revisit the taxonomic status of Andean species and populations of frogs of the Hypsiboas pulchellus group using multiple lines of evidence potentially indicative of evolutionary lineage divergence in anurans: differences in qualitative morphological or bioacoustic character states, no overlap in quantitative characters of advertisement calls, and monophyly of gene genealogies. We found qualitative and quantitative morphological characters to be extremely variable among species and populations of the group and thus of very limited use in assessing lineage divergence. In contrast, phylogenetic analyses based on 16S rRNA and cytochrome b sequences resolved highly supported clades that are in concordance with bioacoustic differences. The results support the specific distinctness of most nominal species recognized in the group, including the Bolivian Hypsiboas balzani and Hypsiboas callipleura, two species that were considered to be synonymous, and revealed the presence of an undescribed species from southern Peru, which is here described as Hypsiboas gladiator sp. n. In contrast, Hypsiboas andinus and Hypsiboas riojanus were mutually paraphyletic, and showed no differences in morphology and acoustic characters. Consequently, we regard the former as a junior synonym of the latter. However, we discovered that populations of H. riojanus from central Bolivia exhibit some degree of genetic differentiation and advertisement call differences with respect to Argentine populations, but sampling of these Bolivian populations is too sparse to draw taxonomic conclusions. Our phylogenetic results support the hypothesis that ancestral lineages of the Andean H. pulchellus group experienced successive splitting events along a latitudinal gradient from north to south.
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| 3. |
- Kånneby, Tobias, 1981-, et al.
(författare)
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Phylogeny of Chaetonotidae and other Paucitubulatina (Gastrotricha: Chaetonotida) and the colonization of aquatic ecosystems
- 2013
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 42:1, s. 88-105
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Tidskriftsartikel (refereegranskat)abstract
- Chaetonotidae is the largest family within Gastrotricha with almost 400 nominal species represented in both freshwater and marine habitats. The group is probably non-monophyletic and suffers from a troubled taxonomy. Current classification is to a great extent based on shape and distribution of cuticular structures, characters that are highly variable. We present the most densely sampled molecular study so far where 17 of the 31 genera belonging to Chaetonotida are represented. Bayesian and maximum likelihood approaches based on 18S rDNA, 28S rDNA and COI mtDNA are used to reconstruct relationships within Chaetonotidae. The use of cuticular structures for supra-specific classification within the group is evaluated and the question of dispersal between marine and freshwater habitats is addressed. Moreover, the subgeneric classification of Chaetonotus is tested in a phylogenetic context. Our results show high support for a clade containing Dasydytidae nested within Chaetonotidae. Within this clade, only three genera are monophyletic following current classification. Genera containing both marine and freshwater species never form monophyletic clades and group with other species according to habitat. Marine members of Aspidiophorus appear to be the sister group of all other Chaetonotidae and Dasydytidae, indicating a marine origin of the clade. Halichaetonotus and marine Heterolepidoderma form a monophyletic group in a sister group relationship to freshwater species, pointing towards a secondary invasion of marine environments of these taxa. Our study highlights the problems of current classification based on cuticular structures, characters that show homoplasy for deeper relationships.
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| 4. |
- Liao, Te-Yu, et al.
(författare)
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Phylogenetic analysis of the genus Rasbora (Teleostei: Cyprinidae)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:2, s. 155-176
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Tidskriftsartikel (refereegranskat)abstract
- A phylogenetic analysis was conducted based on 35 cyprinid taxa, including 29 species of Rasbora, and 41 morphological characters. A strict consensus tree from four equally parsimonious trees recovered rasborins as a monophyletic group characterized by (i) presence of dark supra-anal pigment and subpeduncular streak, (ii) 5–6 branched anal-fin rays, (iii) dorsal-fin insertion 1–3 scales behind pelvic-fin insertion, (iv) lateral process of second vertebra more or less straight, (v) 1–5 more abdominal than caudal vertebrae, (vi) absence of foramen in anterior wall of horizontal limb of the cleithrum, (vii) presence of rasborin process on epibranchial 4, and (viii) interhyal well ossified. Rasbora sensu stricto can be distinguished from all other rasborin genera by the presence of an opercular canal. Four new genera, viz. Brevibora, n. gen., Kottelatia, n, gen., Rasbosoma, n. gen. and Trigonopoma, n. gen., are recognized and described.
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| 5. |
- Peña, Carlos, et al.
(författare)
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Biogeographic history of the subtribe Euptychiina (Lepidoptera, Nymphalidae, Satyrinae)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39, s. 243-258
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Tidskriftsartikel (refereegranskat)abstract
- The diverse butterfly subtribe Euptychiina was thought to be restricted to the Americas. However, there is mounting evidence for the Oriental Palaeonympha opalina being part of Euptychiina and thus a disjunct distribution between it (in eastern Asia) and its sister taxon (in eastern North America). Such a disjunct distribution in both eastern Asia and eastern North America has never been reported for any butterfly taxon. We used 4447 bp of DNA sequences from one mitochondrial gene and four nuclear genes for 102 Euptychiina taxa to obtain a phylogenetic hypothesis of the subtribe, estimate dates of origin and diversifica- tion for major clades and perform a biogeographic analysis. Euptychiina originated 31 Ma in South America. Early Euptychiina dispersed from North to South America via the tem- porary connection known as GAARlandia during Eocene–Oligocene times. The current disjunct distribution of the Oriental Palaeonympha opalina is the result of a northbound dis- persal of a lineage from South America into eastern Asia via North America. The common ancestor of Palaeonympha and its sister taxon Megisto inhabited the continuous forest belt across North Asia and North America, which was connected by Beringia. The closure of this connection caused the split between Palaeonympha and Megisto around 13 Ma and the severe extinctions in western North America because of the climatic changes of the Late Miocene (from 13.5 Ma onwards) resulted in the classic ‘eastern Asia and eastern North America’ disjunct distribution.
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| 6. |
- Ravara, A., et al.
(författare)
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Phylogenetic relationships within Nephtyidae (Polychaeta, Annelida)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:4, s. 394-405
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Tidskriftsartikel (refereegranskat)abstract
- We present the first phylogeny of nephtyids, a common, soft-bottom living polychaete family comprising five genera and over 100 species. Characters used to distinguish nephtyid genera are a matter of controversy and considerable confusion remains as to the generic delineations. The phylogeny is estimated with molecular data from the mitochondrial genes cytochrome oxidase I and 16S rDNA, the nuclear genes 18S rDNA and 28S rDNA and morphological data. The results reveal two well-supported major clades, corresponding in part to the two main genera of the family, Aglaophamus and Nephtys. The species Nephtys pulchra and Nephtys australiensis are transferred to Aglaophamus, and new diagnoses for the genera are provided. Dentinephtys is synonymized with Nephtys, and Nephtys cornuta is sister to the remaining nephtyids and is referred to the new genus Bipalponephtys, together with Nephtys danida and Micronephthys neotena. Micronephthys is sister to Nephtys and Inermonephtys is of uncertain position.
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| 7. |
- Zhou, Hong, et al.
(författare)
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Molecular phylogeny of Nearctic species of Rhynchelmis (Annelida)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39, s. 378-393
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Tidskriftsartikel (refereegranskat)abstract
- The Nearctic species of Rhynchelmis (Clitellata, Lumbriculidae) are known primarily from cool-water habitats in western North America. Their taxonomy has so far been based on limited collections from isolated localities, using intuitive assessment of morphological characters. This approach has proved unsatisfactory when additional populations of closely related species were sampled and scrutinized for incorporation in the present classification. Therefore, in this study, mitochondrial (cytochrome c oxidase subunit I and 16S rDNA) and nuclear internal transcriber spacer (ITS rDNA) genes were analysed as phylogenetic markers of Nearctic Rhynchelmis species. A combined approach with all the three gene regions provided a better resolution than any of the individual genes by itself. The genes demonstrated monophyly of all major groupings proposed on the morphological basis. Within the Rhynchelmis yakimorum complex, however, the genetic data and distribution suggested that two clades initially referred to as a ‘R. yakimorum variant 1’, one from the lower Snake River drainage in Idaho and one from southern coastal Oregon, might represent two separate species. On the other hand, the sympatric distribution and low genetic distance between Rhynchelmis gustafsoni and a form tentatively identified as ‘R. cf. yakimorum’ (both collected in eastern Idaho) indicated conspecific status. This study also showed that the cytochrome c oxidase subunit I (COI) gene, which may be informative of recent and on-going speciation and useful for species discrimination (as a DNA barcode), is less suitable as a single molecular marker for phylogenetic inference. Regardless of whether one deals with very closely related species (such as those of the yakimorum complex), with taxa with a wide and disjunct distribution (such as Rhynchelmis rostrata), or with more distantly related species, COI data should be supplemented by other genetic markers as well as morphological and biogeographical information.
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| 8. |
- Atherton, Sarah, et al.
(författare)
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Wide distributions and cryptic diversity within a Microstomum (Platyhelminthes) species complex
- 2018
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 47, s. 486-498
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Tidskriftsartikel (refereegranskat)abstract
- Microstomum lineare is a common species of fresh and brackish waters found world-wide. Three genes (18S, CO1 and ITS) were sequenced from specimens of M. lineare collected from four countries, and the levels of cryptic diversity and genetic structuring were assessed. Results showed M. lineare has very wide haplotype distributions suggesting higher than expected dispersal capabilities. In addition, three new species were described on the basis of molecular taxonomy: Microstomum artoisi sp. nov., Microstomum tchaikovskyi sp. nov. and Microstomum zicklerorum sp. nov.
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| 9. |
- Bachmann, L., et al.
(författare)
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Systematics and biodiversity research in the era of genomics
- 2016
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 45, s. 3-4
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Tidskriftsartikel (refereegranskat)abstract
- On 5 November 2015, The Norwegian Academy of Sciences and Letters (DNVA) and the editors of the Zoologica Scripta invited to the one-day symposium ‘Systematics and Biodiversity Research in the Era of Genomics’. Some 80 scientists gathered at the premises of the DNVA in Oslo, Norway, to explore and discuss the current trends and future developments in the field of Animal Systematics. © 2016 The Authors. Zoologica Scripta published by John Wiley & Sons Ltd on behalf of Royal Swedish Academy of Sciences.
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| 10. |
- Cibois, A., et al.
(författare)
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Comprehensive phylogeny of the laughingthrushes and allies (Aves, Leiothrichidae) and a proposal for a revised taxonomy
- 2018
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 47:4, s. 428-440
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Tidskriftsartikel (refereegranskat)abstract
- DNA phylogenies have gradually shed light on the phylogenetic relationships of the large babbler group. We focus in this study on the family Leiothrichidae (laughingthrushes and song babblers), which represents the largest clade of babblers in terms of species diversity. Our phylogeny includes all genera and 82% of the recognized species, using mitochondrial and nuclear loci. The sister group to Leiothrichidae is composed of the Pellorneidae (jungle babblers) plus the genus Alcippe. Within Leiothrichidae, four strongly supported primary clades (A-D) are recovered. Clade A includes Grammatoptila, Laniellus and Cutia. Clade B includes a large group of laughingthrushes, all of them classified in Trochalopteron. In Clade C, the two laughingthrushes endemic to southern India, T.fairbanki and T.cachinnans, which have recently been proposed to be placed in the newly erected genus Montecincla, form a sister clade to the group comprising the song babblers (Lioptila, Leiothrix, Heterophasia, Minla, Liocichla, Actinodura, Chrysominla, Siva, and Sibia). Clade D includes the African babblers (Turdoides, Phyllanthus, Kupeornis), Asian relatives (Argya, Acanthoptila, Chatarrhaea) and all remaining laughingthrushes (Garrulax). The time estimates suggest that the early diversification of the Leiothrichidae occurred in the mid-Miocene, a period that corresponds to the diversification of many passerine groups in Asia. A revised taxonomic classification of the family is proposed in the light of these results.
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