| 1. |
- Abd El-Daim, Islam Ahmed Moustafa, et al.
(författare)
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Paenibacillus polymyxa A26 Sfp-type PPTase inactivation limits bacterial antagonism against Fusarium graminearum but not of F. culmorum in kernel assay
- 2015
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Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- Fusarium graminearum and F. culmorum are the causing agents of a destructive disease known as Fusarium head blight (FHB). FHB is a re-emerging disease in small grain cereals which impairs both the grain yield and the quality. Most serious consequence is the contamination of grain with Fusarium mycotoxins that are severe threat to humans and animals. Biological control has been suggested as one of the integrated management strategies to control FHB. Paenibacillus polymyxa is considered as a promising biocontrol agent due to its unique antibiotic spectrum. P. polymyxa A26 is an efficient antagonistic agent against Fusarium spp. In order to optimize strain A26 production, formulation and application strategies traits important for its compatibility need to be revealed. Here we developed a toolbox, comprising of dual culture plate assays and wheat kernel assays, including simultaneous monitoring of FHB causing pathogens, A26, and mycotoxin production. Using this system we show that, besides generally known lipopeptide antibiotic production by P. polymyxa, biofilm formation ability may play a crucial role in the case of stain A26 F. culmorum antagonism. Application of the system for effective strain selection and maintenance is discussed.
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| 2. |
- Abul-Kasim, Kasim, et al.
(författare)
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Increased rod stiffness improves the degree of deformity correction by segmental pedicle screw fixation in adolescent idiopathic scoliosis.
- 2011
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Ingår i: Scoliosis. - : Springer Science and Business Media LLC. - 1748-7161. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: There are limited reports in literature studying the impact of rod diameter and stiffness on the degree of deformity correction in patients with AIS. AIMS: The aims of this study were to evaluate the 3-dimentional deformity correction achieved by segmental pedicle screw fixation in patients with adolescent idiopathic scoliosis, and to find out if learning or the change to stiffer rods had any positive impact on deformity correction. STUDY DESIGN: Retrospective study. METHODS: Plain radiographs and low-dose spine CTs of 116 consecutive patients (aged 15.9 ± 2.8 years) operated during the period 2005-2009 (group 1: patients operated autumn 2005-2006; group 2: 2007; group 3: 2008; group 4: 2009) were retrospectively evaluated. RESULTS: There was no statistically significant difference between the correction of the Cobb angle (P = 0.425) or lower end vertebra tilt (P = 0.298) in patients operated during the first versus the remaining periods of the study. No restoration of the sagittal kyphosis was reported in the first period compared with 5.9° in the last study period (P < 0.001). The correction of vertebral rotation was also improved from 4.2° to 7.8° (P < 0.001) for the same periods. For the whole study population, there was statistically significant correlation between the order of the operation (patient number) and the restoration of sagittal kyphosis (r = -0.344, P = 0.001), and the correction of vertebral rotation (r = 0.370, P < 0.001), but not for the Cobb angle or LEVT. However, there was no significant difference in restoration of sagittal kyphosis and the vertebral rotation in the first 17 patients compared with the last 17 patients operated with rods of 5.5 mm diameter (P = 0.621, and 0.941, respectively), indicating that rod stiffness had more impact on the deformity correction than did learning. CONCLUSIONS: This study showed that rod stiffness had more impact on the deformity correction than did learning.
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| 3. |
- Abul-Kasim, Kasim, et al.
(författare)
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Measurement of vertebral rotation in adolescent idiopathic scoliosis with low-dose CT in prone position - method description and reliability analysis
- 2010
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Ingår i: Scoliosis. - : Springer Science and Business Media LLC. - 1748-7161. ; 5, s. 1-8
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Tidskriftsartikel (refereegranskat)abstract
- Background: To our knowledge there is no report in the literature on measurements of vertebral rotation with low-dose computed tomography (CT) in prone position.Aims: To describe and test the reliability of this new method, compare it with other methods in use and evaluate the influence of body position on the degree of vertebral rotation measured by different radiological methods.Study design: Retrospective study.Methods: 25 consecutive patients with adolescent idiopathic scoliosis scheduled for surgery (17 girls, 8 boys) aged 15 ± 2 years (mean ± SD) were included in the analysis of this study. The degree of the vertebral rotation was in all patients measured according to the method of Perdriolle on standing plain radiographs and on supine CT scanogram, and according to the method of Aaro and Dahlborn on axial CT images in prone position and on magnetic resonance imaging (MRI) in supine position. The measurements were done by one neuroradiologist at two different occasions. Bland and Altman statistical approach was used in the reliability assessment.Results: The reliability of measuring vertebral rotation by axial CT images in prone position was almost perfect with an intraclass correlation coefficient of 0.95, a random error of the intraobserver differences of 2.3°, a repeatability coefficient of 3.2° and a coefficient of variation of 18.4%. Corresponding values for measurements on CT scanogram were 0.83, 5.1°, 7.2°, and 32.8%, respectively, indicating lower reliability of the latter modality and method. The degree of vertebral rotation measured on standing plain radiographs, prone CT scanogram, axial images on CT in prone position and on MRI in supine position were 25.7 ± 9.8°, 21.9 ± 8.3°, 17.4 ± 7.1°, and 16.1 ± 6.5°, respectively. The vertebral rotation measured on axial CT images in prone position was in average 7.5% larger than that measured on axial MRI in supine position.Conclusions: This study has shown that measurements of vertebral rotation in prone position were more reliable on axial CT images than on CT scanogram. The measurement of vertebral rotation on CT (corrected to the pelvic tilt) in prone position imposes lower impact of the recumbent position on the vertebral rotation than did MRI in supine position. However, the magnitude of differences is of doubtful clinical significance.
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| 4. |
- Abul-Kasim, Kasim, et al.
(författare)
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Tonsillar ectopia in idiopathic scoliosis: does it play a role in the pathogenesis and prognosis or is it only an incidental finding?
- 2009
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Ingår i: Scoliosis. - : Springer Science and Business Media LLC. - 1748-7161. ; 4, s. 1-7
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Tidskriftsartikel (refereegranskat)abstract
- ABSTRACT: BACKGROUND: There is an ongoing controversy about the significance of tonsillar ectopia among patients with idiopathic scoliosis (IS). AIM: To find out if tonsillar ectopia occurs more frequently among patients with IS and if it plays any etiological or prognostic role in IS. STUDY DESIGN: Retrospective study. METHODS: Retrospective analysis of 155 consecutive spine MRIs (79 patients with IS and 76 controls; aged 7-25 years; 55% were female) with regard to the position of the cerebellar tonsils in relation to foramen magnum and the sagittal diameter of foramen magnum. All images were evaluated independently by two neuroradiologists. Interobserver and intraobserver reliability analysis was performed by calculation of kappa-value, intraclass correlation coefficient, and systematic and random errors. The occurrence of tonsillar ectopia among patients with IS and controls was estimated and the association of tonsillar ectopia with different predictors has been tested. Statistical significance was set to P
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| 5. |
- Adomas, Aleksandra, et al.
(författare)
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Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus
- 2008
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Ingår i: Tree Physiology. - : Oxford University Press (OUP). - 0829-318X .- 1758-4469. ; 28:6, s. 885-897
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Tidskriftsartikel (refereegranskat)abstract
- To investigate functional differences in the recognition and response mechanisms of conifer roots to fungi with different trophic strategies, Pinus sylvestris L. was challenged with a saprotrophic fungus Trichoderma aureoviride Rifai. The results were compared with separate studies investigating pine interactions with a pathogen, Heterobasidion annosum (Fr.) Bref. sensu stricto and an ectomycorrhizal symbiont, Laccaria bicolor Maire (Orton). Global changes in the expression of 2109 conifer genes were assayed 1, 5 and 15 days after inoculation. Gene expression data from a cDNA microarray were analyzed by the 2-interconnected mixed linear model statistical approach. The total number of genes differentially expressed compared with the uninfected control was similar after challenge with the pathogen and the ectomycorrhizal symbiont, but the number of differentially expressed genes increased over time, for H. annosum, and decreased for L. bicolor. Inoculation of pine roots with T aureoviride resulted overall in a much lower number of genes with changed transcript levels compared with inoculation with H. annosum or L. bicolor. Functional classification of the differentially expressed genes revealed that the ectomycorrhizal fungus triggered transient induction of defence-related genes. The response and induction of defence against the pathogen was delayed and the magnitude increased over time. Thus, there were specific transcriptional responses depending on whether the conifer roots were challenged with mutualistic, saprotrophic or pathogenic fungi. This suggests that pine trees are able to recognize diverse fungal species and specifically distinguish whether they are pathogenic, neutral or beneficial microbial agents.
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| 6. |
- Agrell, Erik, 1965, et al.
(författare)
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Capacity of a nonlinear optical channel with finite memory
- 2014
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Ingår i: Journal of Lightwave Technology. - 0733-8724 .- 1558-2213. ; 32:16, s. 2862-2876
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Tidskriftsartikel (refereegranskat)abstract
- The channel capacity of a nonlinear, dispersive fiber-optic link is revisited. To this end, the popular Gaussian noise (GN) model is extended with a parameter to account for the finite memory of realistic fiber channels. This finite-memory model is harder to analyze mathematically but, in contrast to previous models, it is valid also for nonstationary or heavy-tailed input signals. For uncoded transmission and standard modulation formats, the new model gives the same results as the regular GN model when the memory of the channel is about ten symbols or more. These results confirm previous results that the GN model is accurate for uncoded transmission. However, when coding is considered, the results obtained using the finite-memory model are very different from those obtained by previous models, even when the channel memory is large. In particular, the peaky behavior of the channel capacity, which has been reported for numerous nonlinear channel models, appears to be an artifact of applying models derived for independent input in a coded (i.e., dependent) scenario. © 1983-2012 IEEE.
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| 7. |
- Agrell, Erik, 1965, et al.
(författare)
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Influence of Behavioral Models on Multiuser Channel Capacity
- 2015
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Ingår i: Journal of Lightwave Technology. - 0733-8724 .- 1558-2213. ; 33:17, s. 3507-3515
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Tidskriftsartikel (refereegranskat)abstract
- In order to characterize the channel capacity of a wavelength channel in a wavelength-division multiplexed (WDM) system, statistical models are needed for the transmitted signals on the other wavelengths. For example, one could assume that the transmitters for all wavelengths are configured independently of each other, that they use the same signal power, or that they use the same modulation format. In this paper, it is shown that these so-called behavioral models have a profound impact on the single-wavelength achievable information rate. This is demonstrated by establishing, for the first time, upper and lower bounds on the maximum achievable rate under various behavioral models, for a rudimentary WDM channel model.
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| 8. |
- Agrell, Erik, 1965, et al.
(författare)
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Modulation and detection for multicore superchannels with correlated phase noise [Invited]
- 2018
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Ingår i: 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. ; Part F94-CLEO_SI 2018
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Konferensbidrag (refereegranskat)abstract
- SDM fibers offer new opportunities and challenges for joint transmitter and receiver processing. We review multidimensional modulation and detection theory, describe algorithms for phase tracking and detection over spatial superchannels, and present some experimental results.
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| 9. |
- Agrell, Erik, 1965, et al.
(författare)
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On the symbol error probability of regular polytopes
- 2011
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Ingår i: IEEE Transactions on Information Theory. - 0018-9448 .- 1557-9654. ; 57:6, s. 3411-3415
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Tidskriftsartikel (refereegranskat)abstract
- An exact expression is derived for the symbol error probability when the vertices of the four-dimensional 24-cell are used for digital transmission in Gaussian noise. Corresponding expressions for other regular convex polytopes are summarized. Numerically stable versions of these error probabilities are also obtained. © 2011 IEEE.
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| 10. |
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