| 41. |
|
|
| 42. |
- Fan, Xinfeng, et al.
(författare)
-
Tibetan Plateau Runoff and Evapotranspiration Dataset by an observation-constrained cryosphere-hydrology model
- 2024
-
Ingår i: SCIENTIFIC DATA. - 2052-4463. ; 11:1
-
Tidskriftsartikel (refereegranskat)abstract
- Runoff and evapotranspiration (ET) are pivotal constituents of the water, energy, and carbon cycles. This research presents a 5-km monthly gridded runoff and ET dataset for 1998-2017, encompassing seven headwaters of Tibetan Plateau rivers (Yellow, Yangtze, Mekong, Salween, Brahmaputra, Ganges, and Indus) (hereinafter TPRED). The dataset was generated using the advanced cryosphere-hydrology model WEB-DHM, yielding a Nash coefficient ranging from 0.77 to 0.93 when compared to the observed discharges. The findings indicate that TPRED's monthly runoff notably outperforms existing datasets in capturing hydrological patterns, as evidenced by robust metrics such as the correlation coefficient (CC) (0.944-0.995), Bias (-0.68-0.53), and Root Mean Square Error (5.50-15.59 mm). Additionally, TPRED's monthly ET estimates closely align with expected seasonal fluctuations, as reflected by a CC ranging from 0.94 to 0.98 when contrasted with alternative ET products. Furthermore, TPRED's annual values exhibit commendable concordance with operational products across multiple dimensions. Ultimately, the TPRED will have great application on hydrometeorology, carbon transport, water management, hydrological modeling, and sustainable development of water resources.
|
|
| 43. |
- Fitzpatrick, John, et al.
(författare)
-
SpermTree, a species-level database of sperm morphology spanning the animal tree of life
- 2022
-
Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 9:1
-
Tidskriftsartikel (refereegranskat)abstract
- Sperm are the most morphologically variable cell type known, despite performing the same functional role of fertilizing eggs across all sexually reproducing species. Sperm morphology commonly varies among individuals, populations, closely related species, and across animal phyla. Sperm morphology has long been used as a tool for placing species in a phylogenetic context and a range of selective forces are hypothesized to influence sperm evolution and diversification. However, we currently lack robust examinations of macroevolutionary (i.e. across phyla) patterns of sperm evolution, due largely to the challenges of comparing sperm morphological data across the animal tree of life. Here we describe the SpermTree database, which currently represents 5,675 morphological descriptions of sperm morphology from 4,705 unique species from 27 animal phyla. This dataset includes measurements of sperm head, midpiece, flagellum and total length, the latter of which spans four orders of magnitude. All entries in the dataset are matched to currently accepted scientific names in taxonomic databases, facilitating the use of these data in analyses examining sperm evolution in animals.
|
|
| 44. |
- Flannick, Jason, et al.
(författare)
-
Data Descriptor : Sequence data and association statistics from 12,940 type 2 diabetes cases and controls
- 2017
-
Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 4
-
Tidskriftsartikel (refereegranskat)abstract
- To investigate the genetic basis of type 2 diabetes (T2D) to high resolution, the GoT2D and T2D-GENES consortia catalogued variation from whole-genome sequencing of 2,657 European individuals and exome sequencing of 12,940 individuals of multiple ancestries. Over 27M SNPs, indels, and structural variants were identified, including 99% of low-frequency (minor allele frequency [MAF] 0.1-5%) non-coding variants in the whole-genome sequenced individuals and 99.7% of low-frequency coding variants in the whole-exome sequenced individuals. Each variant was tested for association with T2D in the sequenced individuals, and, to increase power, most were tested in larger numbers of individuals (> 80% of low-frequency coding variants in similar to ~82 K Europeans via the exome chip, and similar to ~90% of low-frequency non-coding variants in similar to ~44 K Europeans via genotype imputation). The variants, genotypes, and association statistics from these analyses provide the largest reference to date of human genetic information relevant to T2D, for use in activities such as T2D-focused genotype imputation, functional characterization of variants or genes, and other novel analyses to detect associations between sequence variation and T2D.
|
|
| 45. |
- Forkel, Robert, et al.
(författare)
-
A revised digital edition of Wurm & Hattori's Language Atlas of the Pacific Area
- 2024
-
Ingår i: Scientific Data. - : Springer Nature. - 2052-4463. ; 11:1
-
Tidskriftsartikel (refereegranskat)abstract
- Wurm & Hattori's Language Atlas of the Pacific Area describes the geographic speaker areas of the languages and language varieties spoken in the Pacific. Thanks to the efforts of the Electronic Cultural Atlas Initiative, this monumental piece of work has been available in digital form for over 15 years. But lacking proper identification of language varieties, this digitized data was largely unusable for today's research methods. We turned ECAI's digitized artefacts of the Language Atlas into an open, reusable geo-referenced dataset of speaker area polygons for a quarter of the world's languages. This allows for much more refined analysis methods to, for example, analyse language contact in the area of the world with the highest linguistic diversity. We also describe a number of tool applications and quality checks which may be useful for methodological development in similar digitization efforts.
|
|
| 46. |
- Forkel, Robert, et al.
(författare)
-
Cross-Linguistic Data Formats, advancing data sharing and re-use in comparative linguistics
- 2018
-
Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 5
-
Tidskriftsartikel (refereegranskat)abstract
- The amount of available digital data for the languages of the world is constantly increasing. Unfortunately, most of the digital data are provided in a large variety of formats and therefore not amenable for comparison and re-use. The Cross-Linguistic Data Formats initiative proposes new standards for two basic types of data in historical and typological language comparison (word lists, structural datasets) and a framework to incorporate more data types (e.g. parallel texts, and dictionaries). The new specification for cross-linguistic data formats comes along with a software package for validation and manipulation, a basic ontology which links to more general frameworks, and usage examples of best practices.
|
|
| 47. |
- Franic, Iva, et al.
(författare)
-
Worldwide diversity of endophytic fungi and insects associated with dormant tree twigs
- 2022
-
Ingår i: Scientific Data. - : Nature Publishing Group. - 2052-4463. ; 9:1
-
Tidskriftsartikel (refereegranskat)abstract
- International trade in plants and climate change are two of the main factors causing damaging tree pests (i.e. fungi and insects) to spread into new areas. To mitigate these risks, a large-scale assessment of tree-associated fungi and insects is needed. We present records of endophytic fungi and insects in twigs of 17 angiosperm and gymnosperm genera, from 51 locations in 32 countries worldwide. Endophytic fungi were characterized by high-throughput sequencing of 352 samples from 145 tree species in 28 countries. Insects were reared from 227 samples of 109 tree species in 18 countries and sorted into taxonomic orders and feeding guilds. Herbivorous insects were grouped into morphospecies and were identified using molecular and morphological approaches. This dataset reveals the diversity of tree-associated taxa, as it contains 12,721 fungal Amplicon Sequence Variants and 208 herbivorous insect morphospecies, sampled across broad geographic and climatic gradients and for many tree species. This dataset will facilitate applied and fundamental studies on the distribution of fungal endophytes and insects in trees.
|
|
| 48. |
- Fridman, Jonas, et al.
(författare)
-
Harmonised statistics and maps of forest biomass and increment in Europe
- 2024
-
Ingår i: Scientific Data. - 2052-4463. ; 11
-
Tidskriftsartikel (refereegranskat)abstract
- Forest biomass is an essential resource in relation to the green transition and its assessment is key for the sustainable management of forest resources. Here, we present a forest biomass dataset for Europe based on the best available inventory and satellite data, with a higher level of harmonisation and spatial resolution than other existing data. This database provides statistics and maps of the forest area, biomass stock and their share available for wood supply in the year 2020, and statistics on gross and net volume increment in 2010–2020, for 38 European countries. The statistics of most countries are available at a sub-national scale and are derived from National Forest Inventory data, harmonised using common reference definitions and estimation methodology, and updated to a common year using a modelling approach. For those counties without harmonised statistics, data were derived from the State of Europe’s Forest 2020 Report at the national scale. The maps are coherent with the statistics and depict the spatial distribution of the forest variables at 100 m resolution.
|
|
| 49. |
- Gabriel, M., et al.
(författare)
-
A relational database to identify differentially expressed genes in the endometrium and endometriosis lesions
- 2020
-
Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 7
-
Tidskriftsartikel (refereegranskat)abstract
- Endometriosis is a common inflammatory estrogen-dependent gynecological disorder, associated with pelvic pain and reduced fertility in women. Several aspects of this disorder and its cellular and molecular etiology remain unresolved. We have analyzed the global gene expression patterns in the endometrium, peritoneum and in endometriosis lesions of endometriosis patients and in the endometrium and peritoneum of healthy women. In this report, we present the EndometDB, an interactive web-based user interface for browsing the gene expression database of collected samples without the need for computational skills. The EndometDB incorporates the expression data from 115 patients and 53 controls, with over 24000 genes and clinical features, such as their age, disease stages, hormonal medication, menstrual cycle phase, and the different endometriosis lesion types. Using the web-tool, the end-user can easily generate various plot outputs and projections, including boxplots, and heatmaps and the generated outputs can be downloaded in pdf-format.
|
|
| 50. |
- Gambs, Sebastien, et al.
(författare)
-
Comment: On the privacy-conscientious use of mobile phone data
- 2018
-
Ingår i: Scientific Data. - : Springer Nature. - 2052-4463 .- 2052-4463. ; 5
-
Tidskriftsartikel (refereegranskat)abstract
- The breadcrumbs we leave behind when using our mobile phones—who somebody calls, for how long, and from where—contain unprecedented insights about us and our societies. Researchers have compared the recent availability of large-scale behavioral datasets, such as the ones generated by mobile phones, to the invention of the microscope, giving rise to the new field of computational social science.
|
|
