| 61. |
- Ferreiro-Iglesias, Aida, et al.
(författare)
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Fine mapping of MHC region in lung cancer highlights independent susceptibility loci by ethnicity
- 2018
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Ingår i: Nature Communications. - : Nature Publishing Group. - 2041-1723. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Lung cancer has several genetic associations identified within the major histocompatibility complex (MHC); although the basis for these associations remains elusive. Here, we analyze MHC genetic variation among 26,044 lung cancer patients and 20,836 controls densely genotyped across the MHC, using the Illumina Illumina OncoArray or Illumina 660W SNP microarray. We impute sequence variation in classical HLA genes, fine-map MHC associations for lung cancer risk with major histologies and compare results between ethnicities. Independent and novel associations within HLA genes are identified in Europeans including amino acids in the HLA-B*0801 peptide binding groove and an independent HLA-DQB1*06 loci group. In Asians, associations are driven by two independent HLA allele sets that both increase risk in HLA-DQB1*0401 and HLA-DRB1*0701; the latter better represented by the amino acid Ala-104. These results implicate several HLA-tumor peptide interactions as the major MHC factor modulating lung cancer susceptibility.
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| 62. |
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| 63. |
- Flärdh, Oscar, et al.
(författare)
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A Control Framework for Online Error Control Adaptation in Networked Applications
- 2006
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Ingår i: Proceedings of IEEE Second International Symposium on Control, Communications, and Signal Processing.
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Konferensbidrag (refereegranskat)abstract
- For many real-time applications running over packet-switched networks, it is important to maintain delivered data quality using a limited amount of network resources. It is therefore natural to employ cost functions that allow online trade-off between the experienced application quality and the resource usage. However, minimizing such cost functions requires perfect knowledge of the network state at the transmission side, while, in general, such information is only partially available. In this paper, we introduce a new adaptive error correction algorithm that optimizes the amount of redundancy based on the available information from the application and the network. An extremum-seeking control algorithm is employed to deal with the high level of uncertainty in the network models. The validity of our approach is illustrated in simulations with varying network loads and loss correlation.
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| 64. |
- Flärdh, Oscar, et al.
(författare)
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A new feedback control mechanism for error correction in packet-switched networks
- 2005
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Ingår i: 44th IEEE Conference on Decision and Control & European Control Conference. ; , s. 488-493
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Konferensbidrag (refereegranskat)abstract
- Error correction mechanisms enable control and other real-time applications to be executed over unreliable packet-switched networks. By adding carefully adjusted redundancy to transmitted data at the sender, it is possible to recover lost data at the receiver and thereby improve effective throughput. We describe simple models for packet loss, which allow us to find the optimal redundancy as a function of packet loss probability. Two feedforward control mechanisms based on the packet loss probability are presented: one that is computed off-line and another one using an on-line algorithm. A drawback with these approaches is their dependency on accurate network state information and precise loss models. To cope with these issues, we propose a new feedback solution that tracks the optimum using gradient estimation. Simulations in ns-2 illustrate the behavior of the error correction schemes, demonstrating that the feedback solution outperforms the feedforward solution in presence of model errors.
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| 65. |
- Flärdh, Oscar, et al.
(författare)
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Analysis of a simple feedback scheme for error correction over a lossy network
- 2007
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Ingår i: 2007 IEEE INTERNATIONAL CONFERENCE ON NETWORKING, SENSING, AND CONTROL. - : IEEE. - 9781424410750 ; , s. 261-266
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Konferensbidrag (refereegranskat)abstract
- A control theoretic analysis of a simple error correction scheme for lossy packet-switched networks is presented. Based on feedback information from the error correction process in the receiver, the sender adjusts the amount of redundancy using a so called extremum-seeking controller, which do not rely on any accurate model of the network loss process. The closed-loop system is shown to converge to a limit cycle in a neighborhood of the optimal redundancy. The result are validated using packet-based simulations with data from wireless sensor network experiments.
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| 66. |
- Flärdh, Oscar, 1980-
(författare)
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Modelling, analysis and experimentation of a simple feedback scheme for error correction control
- 2007
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Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Data networks are an important part in an increasing number of applications with real-time and reliability requirements. To meet these demands a variety of approaches have been proposed. Forward error correction, which adds redundancy to the communicated data, is one of them. However, the redundancy occupies communication bandwidth, so it is desirable to control the amount of redundancy in order to achieve high reliability without adding excessive communication delay. The main contribution of the thesis is to formulate the problem of adjusting the redundancy in a control framework, which enables the dynamic properties of error correction control to be analyzed using control theory. The trade-off between application quality and resource usage is captured by introducing an optimal control problem. Its dependence on the knowledge of the network state at the transmission side is discussed. An error correction controller that optimizes the amount of redundancy without relying on network state information is presented. This is achieved by utilizing an extremum seeking control algorithm to optimize the cost function. Models with varying complexity of the resulting feedback system are presented and analyzed. Conditions for convergence are given. Multiple-input describing function analysis is used to examine periodic solutions. The results are illustrated through computer simulations and experiments on a wireless sensor network.
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| 67. |
- Fröbert, Ole, et al.
(författare)
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Thrombus Aspiration during ST-Segment Elevation Myocardial Infarction
- 2013
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Ingår i: New England Journal of Medicine. - : Massachusetts Medical Society. - 0028-4793 .- 1533-4406. ; 369:17, s. 1587-1597
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundThe clinical effect of routine intracoronary thrombus aspiration before primary percutaneous coronary intervention (PCI) in patients with ST-segment elevation myocardial infarction (STEMI) is uncertain. We aimed to evaluate whether thrombus aspiration reduces mortality. MethodsWe conducted a multicenter, prospective, randomized, controlled, open-label clinical trial, with enrollment of patients from the national comprehensive Swedish Coronary Angiography and Angioplasty Registry (SCAAR) and end points evaluated through national registries. A total of 7244 patients with STEMI undergoing PCI were randomly assigned to manual thrombus aspiration followed by PCI or to PCI only. The primary end point was all-cause mortality at 30 days. ResultsNo patients were lost to follow-up. Death from any cause occurred in 2.8% of the patients in the thrombus-aspiration group (103 of 3621), as compared with 3.0% in the PCI-only group (110 of 3623) (hazard ratio, 0.94; 95% confidence interval [CI], 0.72 to 1.22; P=0.63). The rates of hospitalization for recurrent myocardial infarction at 30 days were 0.5% and 0.9% in the two groups, respectively (hazard ratio, 0.61; 95% CI, 0.34 to 1.07; P=0.09), and the rates of stent thrombosis were 0.2% and 0.5%, respectively (hazard ratio, 0.47; 95% CI, 0.20 to 1.02; P=0.06). There were no significant differences between the groups with respect to the rate of stroke or neurologic complications at the time of discharge (P=0.87). The results were consistent across all major prespecified subgroups, including subgroups defined according to thrombus burden and coronary flow before PCI. ConclusionsRoutine thrombus aspiration before PCI as compared with PCI alone did not reduce 30-day mortality among patients with STEMI. (Funded by the Swedish Research Council and others; ClinicalTrials.gov number, NCT01093404.)
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| 68. |
- Gad, Helge, et al.
(författare)
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MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool
- 2014
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Ingår i: Nature. - : Nature Publishing Group. - 0028-0836 .- 1476-4687. ; 508:7495, s. 215-221
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Tidskriftsartikel (refereegranskat)abstract
- Cancers have dysfunctional redox regulation resulting in reactive oxygen species production, damaging both DNA and free dNTPs. The MTH1 protein sanitizes oxidized dNTP pools to prevent incorporation of damaged bases during DNA replication. Although MTH1 is non-essential in normal cells, we show that cancer cells require MTH1 activity to avoid incorporation of oxidized dNTPs, resulting in DNA damage and cell death. We validate MTH1 as an anticancer target in vivo and describe small molecules TH287 and TH588 as first-in-class nudix hydrolase family inhibitors that potently and selectively engage and inhibit the MTH1 protein in cells. Protein co-crystal structures demonstrate that the inhibitors bindin the active site of MTH1. The inhibitors cause incorporation of oxidized dNTPs in cancer cells, leading to DNA damage, cytotoxicity and therapeutic responses in patient-derived mouse xenografts. This study exemplifies the non-oncogene addiction concept for anticancer treatment and validates MTH1 as being cancer phenotypic lethal.
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| 69. |
- Guida, Florence, et al.
(författare)
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Assessment of Lung Cancer Risk on the Basis of a Biomarker Panel of Circulating Proteins
- 2018
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Ingår i: JAMA Oncology. - : American Medical Association (AMA). - 2374-2437 .- 2374-2445. ; 4:10
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Tidskriftsartikel (refereegranskat)abstract
- Importance There is an urgent need to improve lung cancer risk assessment because current screening criteria miss a large proportion of cases.Objective To investigate whether a lung cancer risk prediction model based on a panel of selected circulating protein biomarkers can outperform a traditional risk prediction model and current US screening criteria.Design, Setting, and Participants Prediagnostic samples from 108 ever-smoking patients with lung cancer diagnosed within 1 year after blood collection and samples from 216 smoking-matched controls from the Carotene and Retinol Efficacy Trial (CARET) cohort were used to develop a biomarker risk score based on 4 proteins (cancer antigen 125 [CA125], carcinoembryonic antigen [CEA], cytokeratin-19 fragment [CYFRA 21-1], and the precursor form of surfactant protein B [Pro-SFTPB]). The biomarker score was subsequently validated blindly using absolute risk estimates among 63 ever-smoking patients with lung cancer diagnosed within 1 year after blood collection and 90 matched controls from 2 large European population-based cohorts, the European Prospective Investigation into Cancer and Nutrition (EPIC) and the Northern Sweden Health and Disease Study (NSHDS).Main Outcomes and Measures Model validity in discriminating between future lung cancer cases and controls. Discrimination estimates were weighted to reflect the background populations of EPIC and NSHDS validation studies (area under the receiver-operating characteristics curve [AUC], sensitivity, and specificity).Results In the validation study of 63 ever-smoking patients with lung cancer and 90 matched controls (mean [SD] age, 57.7 [8.7] years; 68.6% men) from EPIC and NSHDS, an integrated risk prediction model that combined smoking exposure with the biomarker score yielded an AUC of 0.83 (95% CI, 0.76-0.90) compared with 0.73 (95% CI, 0.64-0.82) for a model based on smoking exposure alone (P = .003 for difference in AUC). At an overall specificity of 0.83, based on the US Preventive Services Task Force screening criteria, the sensitivity of the integrated risk prediction (biomarker) model was 0.63 compared with 0.43 for the smoking model. Conversely, at an overall sensitivity of 0.42, based on the US Preventive Services Task Force screening criteria, the integrated risk prediction model yielded a specificity of 0.95 compared with 0.86 for the smoking model.Conclusions and Relevance This study provided a proof of principle in showing that a panel of circulating protein biomarkers may improve lung cancer risk assessment and may be used to define eligibility for computed tomography screening.
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| 70. |
- Heath, Alicia K., et al.
(författare)
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Diet-wide association study of 92 foods and nutrients and lung cancer risk in the European Prospective Investigation into Cancer and Nutrition study and the Netherlands Cohort Study
- 2022
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Ingår i: International Journal of Cancer. - : John Wiley & Sons. - 0020-7136 .- 1097-0215. ; 151:11, s. 1935-1946
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Tidskriftsartikel (refereegranskat)abstract
- It is unclear whether diet, and in particular certain foods or nutrients, are associated with lung cancer risk. We assessed associations of 92 dietary factors with lung cancer risk in 327 790 participants in the European Prospective Investigation into Cancer and Nutrition (EPIC). Cox regression yielded adjusted hazard ratios (HRs) and 95% confidence intervals (CIs) per SD higher intake/day of each food/nutrient. Correction for multiple comparisons was performed using the false discovery rate and identified associations were evaluated in the Netherlands Cohort Study (NLCS). In EPIC, 2420 incident lung cancer cases were identified during a median of 15 years of follow-up. Higher intakes of fibre (HR per 1 SD higher intake/day = 0.91, 95% CI 0.87-0.96), fruit (HR = 0.91, 95% CI 0.86-0.96) and vitamin C (HR = 0.91, 95% CI 0.86-0.96) were associated with a lower risk of lung cancer, whereas offal (HR = 1.08, 95% CI 1.03-1.14), retinol (HR = 1.06, 95% CI 1.03-1.10) and beer/cider (HR = 1.04, 95% CI 1.02-1.07) intakes were positively associated with lung cancer risk. Associations did not differ by sex and there was less evidence for associations among never smokers. None of the six associations with overall lung cancer risk identified in EPIC were replicated in the NLCS (2861 cases), however in analyses of histological subtypes, inverse associations of fruit and vitamin C with squamous cell carcinoma were replicated in the NLCS. Overall, there is little evidence that intakes of specific foods and nutrients play a major role in primary lung cancer risk, but fruit and vitamin C intakes seem to be inversely associated with squamous cell lung cancer.
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