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- Hung, Rayjean J., et al.
(författare)
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Lung Cancer Risk in Never-Smokers of European Descent is Associated With Genetic Variation in the 5(p)15.33 TERT-CLPTM1Ll Region
- 2019
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Ingår i: Journal of Thoracic Oncology. - : ELSEVIER SCIENCE INC. - 1556-0864 .- 1556-1380. ; 14:8, s. 1360-1369
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Tidskriftsartikel (refereegranskat)abstract
- Introduction: Inherited susceptibility to lung cancer risk in never-smokers is poorly understood. The major reason for this gap in knowledge is that this disease is relatively uncommon (except in Asians), making it difficult to assemble an adequate study sample. In this study we conducted a genome-wide association study on the largest, to date, set of European-descent never-smokers with lung cancer. Methods: We conducted a two-phase (discovery and replication) genome-wide association study in never-smokers of European descent. We further augmented the sample by performing a meta-analysis with never-smokers from the recent OncoArray study, which resulted in a total of 3636 cases and 6295 controls. We also compare our findings with those in smokers with lung cancer. Results: We detected three genome-wide statistically significant single nucleotide polymorphisms rs31490 (odds ratio [OR]: 0.769, 95% confidence interval [CI]: 0.722-0.820; p value 5.31 x 10(-16)), rs380286 (OR: 0.770, 95% CI: 0.723-0.820; p value 4.32 x 10(-16)), and rs4975616 OR: 0.778, 95% CI: 0.730-0.829; p value 1.04 x 10(-14)). All three mapped to Chromosome 5 CLPTM1L-TERT region, previously shown to be associated with lung cancer risk in smokers and in never-smoker Asian women, and risk of other cancers including breast, ovarian, colorectal, and prostate. Conclusions: We found that genetic susceptibility to lung cancer in never-smokers is associated to genetic variants with pan-cancer risk effects. The comparison with smokers shows that top variants previously shown to be associated with lung cancer risk only confer risk in the presence of tobacco exposure, underscoring the importance of gene-environment interactions in the etiology of this disease. (C) 2019 International Association for the Study of Lung Cancer. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
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- Agarwal, Nisha Rani, 1987, et al.
(författare)
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SERS detection and DFT calculation of 2-naphthalene thiol adsorbed on Ag and Au probes
- 2016
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Ingår i: Sensors and Actuators, B: Chemical. - : Elsevier BV. - 0925-4005. ; 237, s. 545-555
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Tidskriftsartikel (refereegranskat)abstract
- Two different surface enhanced Raman scattering (SERS) sensors are described, tested and compared against the detection of 2-naphthalenethiol (2NPT, a volatile compound) in both solution state as well as vapor phase. The first sensor is based on an optical fiber properly modeled to induce the adhesion of colloidal Ag nanoparticles on its surface. Excitation and detection of the Raman signal is performed through the optical fiber that can be used as in situ probe for the detection of molecules adsorbed on the SERS sensitized surface. The second SERS sensor is based on nanostructured substrates consisting of Au nanoparticles produced by pulsed laser deposition in presence of a controlled Ar atmosphere. Details at the nanometer scale were observed by SEM and TEM imaging to understand the size and structure of the islands formed as a function of deposition parameters that were selected in order to maximize their SERS response. The sensitivity of the substrates to volatile species was tested by letting evaporate controlled drops of a methanol solution of 2NPT in a chamber of known volume, where the substrate was placed. After complete evaporation of the drops, this provided an in-situ environment suitable for vapor phase measurements at known concentration. SERS spectra were collected after exposing the substrates to the environment within the chamber (vapor phase measurements) or dipping them in a solution for condensed state measurements. The complete absence of the SH stretching peak in the SERS spectra proves the covalent bonding of 2NPT to the metal substrates via the sulfur atom. DFT calculations, including metal-sulfur interaction, provide a good description of the observed SERS spectra. The reported data allow concluding that our SERS substrates are suitable for detection of volatile compounds.
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| 89. |
- Burillo, S. G., et al.
(författare)
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ALMA images the many faces of the NGC 1068 torus and its surroundings
- 2019
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 632
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Tidskriftsartikel (refereegranskat)abstract
- Aims. We investigate the fueling and the feedback of nuclear activity in the nearby (D = 14 Mpc) Seyfert 2 barred galaxy NGC 1068 by studying the distribution and kinematics of molecular gas in the torus and its connections to the host galaxy disk. Methods.We used the Atacama Large Millimeter Array (ALMA ) to image the emission of a set of molecular gas tracers in the circumnuclear disk (CND) and the torus of the galaxy using the CO(2-1), CO(3-2), and HCO+(4-3) lines and their underlying continuum emission with high spatial resolutions (0:0300 0:0900 ' 26 pc). These transitions, which span a wide range of physical conditions of molecular gas (n(H2) 103107 cm3), are instrumental in revealing the density radial stratification and the complex kinematics of the gas in the torus and its surroundings. Results. The ALMA images resolve the CND as an asymmetric ringed disk of D ' 400 pc in size and '1:4 108 M in mass. The CND shows a marked deficit of molecular gas in its central '130 pc region. The inner edge of the ring is associated with the presence of edge-brightened arcs of NIR polarized emission, which are identified with the current working surface of the ionized wind of the active galactic nucleus (AGN). ALMA proves the existence of an elongated molecular disk/torus in NGC 1068 of Mgas torus ' 3 105 M, which extends over a large range of spatial scales D ' 1030 pc around the central engine. The new observations evidence the density radial stratification of the torus: the HCO+(4-3) torus, with a full size DHCO+(43) = 11 0:6 pc, is a factor of between two and three smaller than its CO(2-1) and CO(3-2) counterparts, which have full sizes of DCO(32) = 26 0:6 pc and DCO(21) = 28 0:6 pc, respectively. This result brings into light the many faces of the molecular torus. The torus is connected to the CND through a network of molecular gas streamers detected inside the CND ring. The kinematics of molecular gas show strong departures from circular motions in the torus, the gas streamers, and the CND ring. These velocity field distortions are interconnected and are part of a 3D outflow that reflects the eects of AGN feedback on the kinematics of molecular gas across a wide range of spatial scales around the central engine. In particular, we estimate through modeling that a significant fraction of the gas inside the torus ('0:40:6 Mgas torus) and a comparable amount of mass along the gas streamers are outflowing. However, the bulk of the mass, momentum, and energy of the molecular outflow of NGC 1068 is contained at larger radii in the CND region, where the AGN wind and the radio jet are currently pushing the gas assembled at the Inner Lindblad Resonance (ILR) ring of the nuclear stellar bar. Conclusions. In our favored scenario a wide-angle AGN wind launched from the accretion disk of NGC1068 is currently impacting a sizable fraction of the gas inside the torus. However, a large gas reservoir ('1:21:8 105 M), which lies close to the equatorial plane of the torus, remains unaected by the feedback of the AGN wind and can therefore continue fueling the AGN for at least '14 Myr. Nevertheless, AGN fueling currently seems thwarted on intermediate scales (15 pc r 50 pc).
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| 90. |
- Burillo, S. G., et al.
(författare)
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ALMA imaging of C2H emission in the disk of NGC 1068
- 2017
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 608, s. A56-
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Tidskriftsartikel (refereegranskat)abstract
- Aims. We study the feedback of star formation and nuclear activity on the chemistry of molecular gas in NGC 1068, a nearby (D = 14 Mpc) Seyfert 2 barred galaxy, by analyzing whether the abundances of key molecular species such as ethynyl (C2H), which is a classical tracer of photon dominated regions (PDR), change in the different environments of the disk of the galaxy. Methods. We used the Atacama Large Millimeter Array (ALMA) to map the emission of the hyperfine multiplet of C2H(N = 1-0) and its underlying continuum emission in the central r similar or equal to 35" (2.5 kpc) region of the disk of NGC 1068 with a spatial resolution 1.0 x 0.7 (similar or equal to 50-70 pc). We used maps of the dust continuum emission obtained at 349 GHz by ALMA to derive the H-2 gas column densities and combined these with the C2H map at matched spatial resolution to estimate the fractional abundance of this species. We developed a set of time-dependent chemical models, which include shocks, gas-phase PDRs, and gas-grain chemical models to determine the origin of the C2H gas. Results. A sizeable fraction of the total C2H line emission is detected from the r similar or equal to 1.3 kpc starburst (SB) ring, which is a region that concentrates the bulk of the recent massive star formation in the disk traced by the Pa alpha emission complexes imaged by the Hubble Space Telescope (HST). However, the brightest C2H emission originates from a r similar or equal to 200 pc off -centered circumnuclear disk (CND), where evidence of a molecular outflow has been previously found in other molecular tracers imaged by ALMA. We also detect significant emission that connects the CND with the outer disk in a region that probes the interface between the molecular disk and ionized gas outflow out to r similar or equal to 400 pc. We derived the fractional abundances of C2H (X(C2H)) assuming local thermodynamic equilibrium (LTE) conditions and a set of excitation temperatures (T-ex) constrained by the previous multiline CO studies of the galaxy. Our estimates range from X(C2H) similar or equal to a few 10(-8) in the SB ring up to X(C2H) similar or equal to a few 10(-7) in the outflow region. The PDR models that incorporate gas-grain chemistry are able to account for X(C2H) in the SB ring for moderately dense (n(H-2) >= 10(4) cm(-3)) and moderately UV-irradiated gas (UV-field = 10(4-5) cm(-3)). Conclusions. We find that the transient conditions required to fit the high values of X(C2H) in the outflow are likely due to UV or X-ray irradiated non-dissociative shocks associated with the highly turbulent interface between the outflow and molecular gas in NGC 1068. Although the inferred local timescales are short, the erosion of molecular clouds by the active galactic nucleus (AGN) wind and/or the jet likely resupplies the interface working surface continuously, making a nearly steady state persist in the disk of the galaxy.
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