| 21. |
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| 22. |
- Jiang, X., et al.
(författare)
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Shared heritability and functional enrichment across six solid cancers
- 2019
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 10
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Tidskriftsartikel (refereegranskat)abstract
- Quantifying the genetic correlation between cancers can provide important insights into the mechanisms driving cancer etiology. Using genome-wide association study summary statistics across six cancer types based on a total of 296,215 cases and 301,319 controls of European ancestry, here we estimate the pair-wise genetic correlations between breast, colorectal, head/neck, lung, ovary and prostate cancer, and between cancers and 38 other diseases. We observed statistically significant genetic correlations between lung and head/neck cancer (r(g) = 0.57, p = 4.6 x 10(-8)), breast and ovarian cancer (r(g) = 0.24, p = 7 x 10(-5)), breast and lung cancer (r(g) = 0.18, p = 1.5 x 10(-6)) and breast and colorectal cancer (r(g) = 0.15, p = 1.1 x 10(-4)). We also found that multiple cancers are genetically correlated with non-cancer traits including smoking, psychiatric diseases and metabolic characteristics. Functional enrichment analysis revealed a significant excess contribution of conserved and regulatory regions to cancer heritability. Our comprehensive analysis of cross-cancer heritability suggests that solid tumors arising across tissues share in part a common germline genetic basis.
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| 23. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 24. |
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| 25. |
- Aktas, A., et al.
(författare)
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Inclusive D*(+/-) meson and associated dijet production in deep-inelastic scattering at HERA
- 2007
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 51:2, s. 271-287
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Tidskriftsartikel (refereegranskat)abstract
- Inclusive D*(+/-) production is measured in deep-inelastic ep scattering at HERA with the H1 detector. In addition, the production of dijets in events with a D*(+/-) meson is investigated. The analysis covers values of photon virtuality 2 <= Q(2) <= 100 GeV2 and of inelasticity 0.05 <= y <= 0.7. Differential cross sections are measured as a function of Q(2) and x and of various D*(+/-) meson and jet observables. Within the experimental and theoretical uncertainties all measured cross sections are found to be adequately described by next-to-leading order (NLO) QCD calculations, based on the photon - gluon fusion process and DGLAP evolution, without the need for an additional resolved component of the photon beyond what is included at NLO. A reasonable description of the data is also achieved by a prediction based on the CCFM evolution of partons involving the kT- unintegrated gluon distribution of the proton.
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| 26. |
- Aktas, A., et al.
(författare)
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Tests of QCD factorisation in the diffractive production of dijets in deep-inelastic scattering and photoproduction at HERA
- 2007
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 51:3, s. 549-568
-
Tidskriftsartikel (refereegranskat)abstract
- Measurements are presented of differential dijet cross sections in diffractive photoproduction (Q(2) < 0.01 GeV2) and deep-inelastic scattering processes (DIS, 4 < Q2 < 80 GeV2). The event topology is given by ep -> eXY, in which the system X, containing at least two jets, is separated from a leading low-mass baryonic system Y by a large rapidity gap. The dijet cross sections are compared with NLO QCD predictions based on diffractive parton densities previously obtained from a QCD analysis of inclusive diffractive DIS cross sections by H1. In DIS, the dijet data are well described, supporting the validity of QCD factorisation. The diffractive DIS dijet data are more sensitive to the diffractive gluon density at high fractional parton momentum than the measurements of inclusive diffractive DIS. In photoproduction, the predicted dijet cross section has to be multiplied by a factor of approximately 0.5 for both direct and resolved photon interactions to describe the measurements. The ratio of measured dijet cross section to NLO prediction in photoproduction is a factor 0.5 +/- 0.1 smaller than the same ratio in DIS. This suppression is the first clear observation of QCD hard scattering factorisation breaking at HERA. The measurements are also compared to the two soft colour neutralisation models SCI and GAL. The SCI model describes diffractive dijet production in DIS but not in photoproduction. The GAL model fails in both kinematic regions.
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| 27. |
- Aktas, A., et al.
(författare)
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Diffractive deep-inelastic scattering with a leading proton at HERA
- 2006
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 48:3, s. 749-766
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Tidskriftsartikel (refereegranskat)abstract
- The cross section for the diffractive deep-inelastic scattering process ep -> eX(P) is measured, with the leading final state proton detected in the H1 Forward Proton Spectrometer. The data analysed cover the range x(P) < 0.1 in fractional proton longitudinal momentum loss, 0.08 < vertical bar t vertical bar < 0.5 GeV-2 in squared four-momentum transfer at the proton vertex, 2 < Q(2) < 50 GeV2 in photon virtuality and 0.004 < beta = x/x(P) < 1, where x is the Bjorken scaling variable. For x(P) less than or similar to 10(-2), the differential cross section has a dependence of approximately d sigma/dt proportional to e(6t), independently of x(P), beta and Q(2) within uncertainties. The cross section is also measured triple differentially in x(P), beta and Q(2). The x(P) dependence is interpreted in terms of an effective pomeron trajectory with intercept alpha(P) (0) = 1.114 +/- 0.018(stat.) +/- 0.012(syst.)(-0.020)(+0.040) (model) and a subleading exchange. The data are in good agreement with an H1 measurement for which the event selection is based on a large gap in the rapidity distribution of the final state hadrons, after accounting for proton dissociation contributions in the latter. Within uncertainties, the dependence of the cross section on x and Q(2) can thus be factorised from the dependences on all studied variables which characterise the proton vertex, for both the pomeron and the sub-leading exchange.
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| 28. |
- Aktas, A., et al.
(författare)
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Inclusive D-*+/- meson cross sections and D-*+/--jet correlations in photoproduction at HERA
- 2007
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 50:2, s. 251-267
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Tidskriftsartikel (refereegranskat)abstract
- Differential photoproduction cross sections are measured for events containing D-*+/- mesons. The data were taken with the H1 detector at the ep collider HERA and correspond to an integrated luminosity of 51.1 pb(-1). The kinematic region covers small photon virtualities Q(2) < 0.01 GeV2 and photon-proton centre-of-mass energies of 171 < W gamma(Cep) < 256 GeV. The details of the heavy quark production process are further investigated in events with one or two jets in addition to the D-*+/- meson. Differential cross sections for D-* + jet production are determined and the correlations between the D-*+/- meson and the jet(s) are studied. The results are compared with perturbative QCD predictions applying collinear- or k(t)-factorisation.
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| 29. |
- Aktas, A., et al.
(författare)
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Measurement and QCD analysis of the diffractive deep-inelastic scattering cross section at HERA
- 2006
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 48:3, s. 715-748
-
Forskningsöversikt (refereegranskat)abstract
- A detailed analysis is presented of the diffractive deep-inelastic scattering process ep -> eXY, where Y is a proton or a low mass proton excitation carrying a fraction 1 - x(IP) > 0.95 of the incident proton longitudinal momentum and the squared four-momentum transfer at the proton vertex satisfies |t| < 1 GeV2. Using data taken by the H1 experiment, the cross section is measured for photon virtualities in the range 3.5 <= Q(2) <= 1600 GeV2, triple differentially in x(IP), Q(2) and beta = x/x(P), where x is the Bjorken scaling variable. At low x(IP), the data are consistent with a factorisable x(IP) dependence, which can be described by the exchange of an effective pomeron trajectory with intercept alpha(IP)(0) = 1.118 +/- 0.008(exp.)(-0.010)(+0.029)(model). Diffractive parton distribution functions and their uncertainties are determined from a next-to-leading order DGLAP QCD analysis of the Q(2)and beta dependences of the cross section. The resulting gluon distribution carries an integrated fraction of around 70% of the exchanged momentum in the Q(2) range studied. Total and differential cross sections are also measured for the diffractive charged current process e(+) p -> (v) over bar eXY and are found to be well described by predictions based on the diffractive parton distributions. The ratio of the diffractive to the inclusive neutral current ep cross sections is studied. Over most of the kinematic range, this ratio shows no significant dependence on Q(2) at fixed x(P) and x or on x at fixed Q(2) and beta.
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| 30. |
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