| 31. |
- Keck, Michaela Kristina, et al.
(författare)
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Amplification of the PLAG-family genes—PLAGL1 and PLAGL2—is a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification
- 2023
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Ingår i: Acta Neuropathologica. - : Springer Science and Business Media LLC. - 0001-6322 .- 1432-0533. ; 145:1, s. 49-69
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Tidskriftsartikel (refereegranskat)abstract
- Pediatric central nervous system (CNS) tumors represent the most common cause of cancer-related death in children aged 0–14 years. They differ from their adult counterparts, showing extensive clinical and molecular heterogeneity as well as a challenging histopathological spectrum that often impairs accurate diagnosis. Here, we use DNA methylation-based CNS tumor classification in combination with copy number, RNA-seq, and ChIP-seq analysis to characterize a newly identified CNS tumor type. In addition, we report histology, patient characteristics, and survival data in this tumor type. We describe a biologically distinct pediatric CNS tumor type (n = 31 cases) that is characterized by focal high-level amplification and resultant overexpression of either PLAGL1 or PLAGL2, and an absence of recurrent genetic alterations characteristic of other pediatric CNS tumor types. Both genes act as transcription factors for a regulatory subset of imprinted genes (IGs), components of the Wnt/β-Catenin pathway, and the potential drug targets RET and CYP2W1, which are also specifically overexpressed in this tumor type. A derived PLAGL-specific gene expression signature indicates dysregulation of imprinting control and differentiation/development. These tumors occurred throughout the neuroaxis including the cerebral hemispheres, cerebellum, and brainstem, and were predominantly composed of primitive embryonal-like cells lacking robust expression of markers of glial or neuronal differentiation (e.g., GFAP, OLIG2, and synaptophysin). Tumors with PLAGL1 amplification were typically diagnosed during adolescence (median age 10.5 years), whereas those with PLAGL2 amplification were diagnosed during early childhood (median age 2 years). The 10-year overall survival was 66% for PLAGL1-amplified tumors, 25% for PLAGL2-amplified tumors, 18% for male patients, and 82% for female patients. In summary, we describe a new type of biologically distinct CNS tumor characterized by PLAGL1/2 amplification that occurs predominantly in infants and toddlers (PLAGL2) or adolescents (PLAGL1) which we consider best classified as a CNS embryonal tumor and which is associated with intermediate survival. The cell of origin and optimal treatment strategies remain to be defined.
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| 32. |
- Lacour, S., et al.
(författare)
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The limb-darkened Arcturus : imaging with the IOTA/IONIC interferometer
- 2008
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 485:2, s. 561-570
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Tidskriftsartikel (refereegranskat)abstract
- Aims. We undertook an H band interferometric examination of Arcturus, a star frequently used as a spatial and spectral calibrator. Methods. Using the IOTA 3 telescope interferometer, we performed spectro-interferometric observations (R approximate to 35) of Arcturus. Atmospheric models and prescriptions were fitted to the data to derive the brightness distribution of the photosphere. Image reconstruction was performed using two software algorithms: WISARD and MIRA. Results. An achromatic power law proved to be a good model of the brightness distribution, with a limb darkening compatible with the one derived from atmospheric model simulations using our mARCS model. A Rosseland diameter of 21.05 +/- 0.21 was derived, corresponding to an effective temperature of T-eff = 4295 +/- 26 K. No companion was detected from the closure phases, with an upper limit on the brightness ratio of 8 x 10(-4) at 1 AU. The dynamic range at such distance from the photosphere was established as 1.5 x 10(-4) (1 sigma rms). An upper limit of 1.7 x 10(-3) was also derived for the level of brightness asymmetries present in the photosphere.
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| 33. |
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| 34. |
- Merkl, Philipp, et al.
(författare)
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Ultrafast transition between exciton phases in van der Waals heterostructures
- 2019
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Ingår i: Nature Materials. - : Springer Science and Business Media LLC. - 1476-4660 .- 1476-1122. ; 18:7, s. 691-696
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- © 2019, The Author(s), under exclusive licence to Springer Nature Limited. Heterostructures of atomically thin van der Waals bonded monolayers have opened a unique platform to engineer Coulomb correlations, shaping excitonic1–3, Mott insulating4 or superconducting phases5,6. In transition metal dichalcogenide heterostructures7, electrons and holes residing in different monolayers can bind into spatially indirect excitons1,3,8–11 with a strong potential for optoelectronics11,12, valleytronics1,3,13, Bose condensation14, superfluidity14,15 and moiré-induced nanodot lattices16. Yet these ideas require a microscopic understanding of the formation, dissociation and thermalization dynamics of correlations including ultrafast phase transitions. Here we introduce a direct ultrafast access to Coulomb correlations between monolayers, where phase-locked mid-infrared pulses allow us to measure the binding energy of interlayer excitons in WSe2/WS2 hetero-bilayers by revealing a novel 1s–2p resonance, explained by a fully quantum mechanical model. Furthermore, we trace, with subcycle time resolution, the transformation of an exciton gas photogenerated in the WSe2 layer directly into interlayer excitons. Depending on the stacking angle, intra- and interlayer species coexist on picosecond scales and the 1s–2p resonance becomes renormalized. Our work provides a direct measurement of the binding energy of interlayer excitons and opens the possibility to trace and control correlations in novel artificial materials.
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| 35. |
- Schuller, C., et al.
(författare)
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Polarization-dependent optical properties of planar photonic crystals infiltrated with liquid crystals
- 2005
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Ingår i: Applied Physics Letters. - : AIP Publishing. - 0003-6951 .- 1077-3118. ; 87:12
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Tidskriftsartikel (refereegranskat)abstract
- Photonic crystals with infiltrated liquid crystals are investigated in the 1.5 mu m wavelength regime. Due to the strong temperature dependence of the refractive index of liquid crystals, especially near the clearing point, i.e., at the transition between nematic and isotropic phase, the optical properties of photonic crystals can be tuned by small temperature changes. The refractive index of liquid crystals is birefringent and, therefore, sensitive for the polarization of the incident light. By using microresonators embedded into planar photonic crystal waveguides, the polarization dependence of the optical properties with and without infiltrated liquid crystal is investigated. The experimental results quantitatively agree well with the calculated photonic band structure assuming a temperature depending reorientation of the liquid crystal director field inside the holes.
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| 36. |
- Sendker, Franziska L., et al.
(författare)
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Emergence of fractal geometries in the evolution of a metabolic enzyme
- 2024
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Ingår i: Nature. - : Springer Nature. - 0028-0836 .- 1476-4687. ; 628:8009, s. 894-900
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Tidskriftsartikel (refereegranskat)abstract
- Fractals are patterns that are self-similar across multiple length-scales1. Macroscopic fractals are common in nature2,3,4; however, so far, molecular assembly into fractals is restricted to synthetic systems5,6,7,8,9,10,11,12. Here we report the discovery of a natural protein, citrate synthase from the cyanobacterium Synechococcus elongatus, which self-assembles into Sierpiński triangles. Using cryo-electron microscopy, we reveal how the fractal assembles from a hexameric building block. Although different stimuli modulate the formation of fractal complexes and these complexes can regulate the enzymatic activity of citrate synthase in vitro, the fractal may not serve a physiological function in vivo. We use ancestral sequence reconstruction to retrace how the citrate synthase fractal evolved from non-fractal precursors, and the results suggest it may have emerged as a harmless evolutionary accident. Our findings expand the space of possible protein complexes and demonstrate that intricate and regulatable assemblies can evolve in a single substitution.
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| 37. |
- Wittborn, J., et al.
(författare)
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Magnetic domain and domain-wall imaging of submicron Co dots by probing the magnetostrictive response using atomic force microscopy
- 2000
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Ingår i: Applied Physics Letters. - : AIP Publishing. - 0003-6951 .- 1077-3118. ; 76:20, s. 2931-2933
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Tidskriftsartikel (refereegranskat)abstract
- An approach to image the domains and domain walls of small ferromagnetic entities using atomic force microscopy (AFM), with a nonmagnetic AFM probe, has been developed. Exciting the sample in an external ac magnetic field, the distribution of magnetostrictive response at the surface is detected. By this technique, the domains and domain walls of submicron Co dots have been imaged with a 1 nm lateral resolution. In elliptical Co dots with a 350-nm-long axis on a triangular lattice array with 400 nm periodicity, we find evidence for two domains with opposite magnetization orientation across a wall. The domain-wall width in these dots is found to be about 35 nm. Furthermore, we observe a ferromagnetic alignment of the domains in the neighboring dots, which suggests a magnetostatic interaction among the dots.
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| 38. |
- Ahmed, Towfiq, et al.
(författare)
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Correlation dynamics and enhanced signals for the identification of serial biomolecules and DNA bases
- 2014
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Ingår i: Nanotechnology. - : IOP Publishing. - 0957-4484 .- 1361-6528. ; 25:12, s. 125705-
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Tidskriftsartikel (refereegranskat)abstract
- Nanopore-based sequencing has demonstrated a significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multilayered graphene-based nanopore device architecture for the recognition of single biomolecules. Molecular detection and analysis can be accomplished through the detection of transverse currents as the molecule or DNA base translocates through the nanopore. To increase the overall signal-to-noise ratio and the accuracy, we implement a new 'multi-point cross-correlation' technique for identification of DNA bases or other molecules on the single molecular level. We demonstrate that the cross-correlations between each nanopore will greatly enhance the transverse current signal for each molecule. We implement first-principles transport calculations for DNA bases surveyed across a multilayered graphene nanopore system to illustrate the advantages of the proposed geometry. A time-series analysis of the cross-correlation functions illustrates the potential of this method for enhancing the signal-to-noise ratio. This work constitutes a significant step forward in facilitating fingerprinting of single biomolecules using solid state technology.
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| 39. |
- Batlle, X., et al.
(författare)
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Quantitative x-ray photoelectron spectroscopy study of Al/AlOx bilayers
- 2002
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Ingår i: Journal of Applied Physics. - : AIP Publishing. - 0021-8979 .- 1089-7550. ; 91:12, s. 10163-10168
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Tidskriftsartikel (refereegranskat)abstract
- An x-ray photoelectron spectroscopy (XPS) analysis of Nb/Al wedge bilayers, oxidized by both plasma and natural oxidation, is reported. The main goal is to show that the oxidation state-i.e., O:(oxidize)Al ratio-, structure and thickness of the surface oxide layer, as well as the thickness of the metallic Al leftover, as functions of the oxidation procedure, can be quantitatively evaluated from the XPS spectra. This is relevant to the detailed characterization of the insulating barriers in (magnetic) tunnel junctions.
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| 40. |
- Batlle, X., et al.
(författare)
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The oxidation state at tunnel junction interfaces
- 2003
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Ingår i: Journal of Magnetism and Magnetic Materials. - 0304-8853 .- 1873-4766. ; 260:02-jan, s. 78-83
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Tidskriftsartikel (refereegranskat)abstract
- The oxidation state at the interfaces of Nb/Al-AlOx/Pb junctions is discussed. Conductance-voltage curves below and above the superconducting temperature suggest tunneling conduction, while X-ray photoelectron spectroscopy shows the existence of a thin AlOx layer at the Nb/Al interface. We demonstrate that at the usual 10(-7) Torr range of base pressures in the sputtering chamber, this is due to the time elapsed between the deposition of the Nb and Al bottom layers, in both Nb/Al-AlOx/Pb tunnel junctions and Nb/Al bilayers. We also give some direct evidence of the oxidation of the top Pb electrode on the Nb electrode surface. Such oxidation probably occurs at the pinholes of the intermediate Al-AlOx layer of the tunnel junctions, as a consequence of the oxidation state at the Nb/Al interface, which helps to avoid barrier shorts and enhances the quality of the tunnel barrier. We therefore suggest that there is oxide formation in other places besides where there is an actual oxide deposited. This is relevant for the performance of magnetic tunnel junctions since in most tunneling studies it is assumed that once the oxide is deposited, that is the only place where there is an oxide. This is also a very general statement applicable to thin film systems.
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