| 21. |
- Wang, Anqi, et al.
(författare)
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Characterizing prostate cancer risk through multi-ancestry genome-wide discovery of 187 novel risk variants
- 2023
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Ingår i: Nature Genetics. - : Springer Nature. - 1061-4036 .- 1546-1718. ; 55:12, s. 2065-2074
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Tidskriftsartikel (refereegranskat)abstract
- The transferability and clinical value of genetic risk scores (GRSs) across populations remain limited due to an imbalance in genetic studies across ancestrally diverse populations. Here we conducted a multi-ancestry genome-wide association study of 156,319 prostate cancer cases and 788,443 controls of European, African, Asian and Hispanic men, reflecting a 57% increase in the number of non-European cases over previous prostate cancer genome-wide association studies. We identified 187 novel risk variants for prostate cancer, increasing the total number of risk variants to 451. An externally replicated multi-ancestry GRS was associated with risk that ranged from 1.8 (per standard deviation) in African ancestry men to 2.2 in European ancestry men. The GRS was associated with a greater risk of aggressive versus non-aggressive disease in men of African ancestry (P = 0.03). Our study presents novel prostate cancer susceptibility loci and a GRS with effective risk stratification across ancestry groups.
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| 22. |
- Wang, Guan, et al.
(författare)
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Transient analyses for China initiative Accelerator Driven System using the extended BELLA code
- 2023
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Ingår i: Annals of Nuclear Energy. - : Elsevier BV. - 0306-4549 .- 1873-2100. ; 190
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Tidskriftsartikel (refereegranskat)abstract
- China initiative Accelerator Driven System (CiADS) is a 10 MW lead-bismuth eutectic (LBE) cooled subcritical reactor loaded with UO2 fuels in the first phase, which is designed to demonstrate the engineering feasibility of the ADS concept. The transient analyses were performed to show the safety potential and dynamic characteristics of the CiADS subcritical reactor using the extended BELLA code. Typical scenarios, such as beam-trip transients, unprotected beam overpower (UBOP), unprotected and protected loss of flow (ULOF and PLOF), unprotected and protected loss of heat sink (ULOHS and PLOHS) and self-defined station blackout (SBO), were analyzed and simulated. The results indicate that, as a low-power reactor, the CiADS subcritical reactor has a large margin to avoid severe damage in the core. Short-term cladding failure caused by thermal fatigue under frequent beam trips may not happen since the variations of temperatures are relatively small. However, accelerated LBE corrosion combined with accumulated creep tends to be a risk under ULOF and ULOHS.
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| 23. |
- Wang, Kanix, et al.
(författare)
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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding
- 2021
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Ingår i: npj Systems Biology and Applications. - : Springer Science and Business Media LLC. - 2056-7189. ; 7:1
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Tidskriftsartikel (refereegranskat)abstract
- Machine reading (MR) is essential for unlocking valuable knowledge contained in millions of existing biomedical documents. Over the last two decades1,2, the most dramatic advances in MR have followed in the wake of critical corpus development3. Large, well-annotated corpora have been associated with punctuated advances in MR methodology and automated knowledge extraction systems in the same way that ImageNet4 was fundamental for developing machine vision techniques. This study contributes six components to an advanced, named entity analysis tool for biomedicine: (a) a new, Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguages of molecular biology, genetics, biochemistry, and medicine; (b) detailed guidelines for human experts annotating hundreds of named entity classes; (c) pictographs for all named entities, to simplify the burden of annotation for curators; (d) an original, annotated corpus comprising 35,865 sentences, which encapsulate 190,679 named entities and 43,438 events connecting two or more entities; (e) validated, off-the-shelf, named entity recognition (NER) automated extraction, and; (f) embedding models that demonstrate the promise of biomedical associations embedded within this corpus.
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| 24. |
- Wang, Sheng, et al.
(författare)
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De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis
- 2018
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Ingår i: Cell Reports. - : CELL PRESS. - 2211-1247. ; 24:13, s. 3441-
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Tidskriftsartikel (refereegranskat)abstract
- We previously established the contribution of de novo damaging sequence variants to Tourette disorder (TD) through whole-exome sequencing of 511 trios. Here, we sequence an additional 291 TD trios and analyze the combined set of 802 trios. We observe an overrepresentation of de novo damaging variants in simplex, but not multiplex, families; we identify a high-confidence TD risk gene, CELSR3 (cadherin EGF LAG seven-pass G-type receptor 3); we find that the genes mutated in TD patients are enriched for those related to cell polarity, suggesting a common pathway underlying pathobiology; and we confirm a statistically significant excess of de novo copy number variants in TD. Finally, we identify significant overlap of de novo sequence variants between TD and obsessive-compulsive disorder and de novo copy number variants between TD and autism spectrum disorder, consistent with shared genetic risk.
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| 25. |
- Wang, Sheng-Jun, 1981-, et al.
(författare)
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Influence of synaptic interaction on firing synchronization and spike death in excitatory neuronal networks
- 2008
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - New York : American Physical Society through the American Institute of Physics. - 1063-651X .- 1095-3787. ; 78:6, s. 061906-
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Tidskriftsartikel (refereegranskat)abstract
- We investigate the influence of efficacy of synaptic interaction on firing synchronization in excitatoryneuronal networks. We find spike death phenomena: namely, the state of neurons transits from the limit cycleto a fixed point or transient state. The phenomena occur under the perturbation of an excitatory synapticinteraction, which has a high efficacy. We show that the decrease of synaptic current results in spike deaththrough depressing the feedback of the sodium ionic current. In the networks with the spike death property thedegree of synchronization is lower and insensitive to the heterogeneity of neurons. The mechanism of theinfluence is that the transition of the neuron state disrupts the adjustment of the rhythm of the neuronsoscillation and prevents a further increase of the firing synchronization.
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| 26. |
- Wang, Xiangyang, et al.
(författare)
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Design and Experimental Verification of a Parallel Hip Exoskeleton System for Full-Gait-Cycle Rehabilitation
- 2022
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Ingår i: Journal of Mechanisms and Robotics. - : ASME International. - 1942-4302 .- 1942-4310. ; 14:5
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Tidskriftsartikel (refereegranskat)abstract
- Rehabilitation with exoskeletons after hip joint replacement is a tendency to achieve efficient recovery of people to rebuild their human motor functions. However, the kinematic mismatch between the kinematic and biological hip is a problem in most existing exoskeletons that can cause additional stress in the hip. To avoid secondary damage, the misalignment between the mechanical and biological hip joint of an exoskeleton must be compensated. This paper introduces a novel hip exoskeleton system based on parallel structure. The exoskeleton can inherently address the kinematic mismatch by introducing additional kinematic redundancy, while requiring no additional kinematic components and volumes. To achieve bidirectional full-gait-cycle walking assistance, a remote actuation system is designed for power delivery, and a control scheme is proposed to reject disturbances caused by gait dynamics during walking exercises. Human testing was carried out to evaluate the performance of the system. The results show that the exoskeleton has good human-machine kinematic compatibility and can achieve promising force tracking in the presence of gait dynamics.
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| 27. |
- Yang, Fu-Sheng, et al.
(författare)
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Chromosome-level genome assembly of a parent species of widely cultivated azaleas
- 2020
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Ingår i: Nature Communications. - : Nature Publishing Group. - 2041-1723. ; 11:1
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Tidskriftsartikel (refereegranskat)abstract
- Azaleas (Ericaceae) comprise one of the most diverse ornamental plants, renowned for their cultural and economic importance. We present a chromosome-scale genome assembly for Rhododendron simsii, the primary ancestor of azalea cultivars. Genome analyses unveil the remnants of an ancient whole-genome duplication preceding the radiation of most Ericaceae, likely contributing to the genomic architecture of flowering time. Small-scale gene duplications contribute to the expansion of gene families involved in azalea pigment biosynthesis. We reconstruct entire metabolic pathways for anthocyanins and carotenoids and their potential regulatory networks by detailed analysis of time-ordered gene co-expression networks. MYB, bHLH, and WD40 transcription factors may collectively regulate anthocyanin accumulation in R. simsii, particularly at the initial stages of flower coloration, and with WRKY transcription factors controlling progressive flower coloring at later stages. This work provides a cornerstone for understanding the underlying genetics governing flower timing and coloration and could accelerate selective breeding in azalea. Azaleas are one of the most diverse ornamental plants and have cultural and economic importance. Here, the authors report a chromosome-scale genome assembly for the primary ancestor of the azalea cultivar Rhododendro simsi and identify transcription factors that may function in flower coloration at different stages.
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| 28. |
- Yang, Xin, et al.
(författare)
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Tribo-corrosion resistance of Ti-Nb-Cr-Mo-Al refractory high-entropy alloys in molten aluminum
- 2023
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Ingår i: Corrosion Science. - 0010-938X. ; 224
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Tidskriftsartikel (refereegranskat)abstract
- Ti40Nb25Cr15Mo10Al10 and Ti40Nb20Cr20Mo10Al10 refractory high-entropy alloys (RHEAs) were designed and fabricated, aiming at investigating their mechanical properties, corrosion and tribo-corrosion behavior in molten aluminum. Compared with H13 steel, these RHEAs exhibit significantly better combinations of high-temperature mechanical properties, corrosion and tribo-corrosion resistance. Low solubility of constituent elements in molten aluminum along with slow diffusion of Al atoms in RHEAs’ matrices, are responsible for the outstanding corrosion resistance of RHEAs. Exceptional tribo-corrosion resistance of RHEAs derives from their outstanding combinations of corrosion resistance and high-temperature mechanical properties. Additionally, higher content of Cr in RHEAs would lead to worse tribo-corrosion resistance.
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| 29. |
- Zhang, Jin-Ting, et al.
(författare)
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Nuclear to cytoplasmic shift of p33ING1b protein from normal oral mucosa to oral squamous cell carcinoma in relation to clinicopathological variables
- 2008
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Ingår i: Journal of Cancer Research and Clinical Oncology. - : Springer Science and Business Media LLC. - 0171-5216 .- 1432-1335. ; 134:3, s. 421-426
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Tidskriftsartikel (refereegranskat)abstract
- Purpose: p33ING1b, as a candidate tumour suppressor gene, has been found to be expressed a proportion of oral squamous cell carcinomas (OSCCs), however, its clinicopathological significance is not studied yet. Our aim was to investigate association of p33ING1b expression with clinicopathological variables and particularly interesting new cysteine-histidine rich protein (PINCH) in OSCCs. Methods: p33ING1b expression was immumohistochemically examined in 20 normal oral mucosa specimens and 49 OSCCs. Results: Normal squamous cells showed only p33ING1b nuclear expression (no cytoplasmic expression), with a rate of 90% positive cases. While 24% of OSCCs appeared cytoplasmic expression (11 of them with weak nuclear staining) and the rest tumours (76%) were negative for p33 ING1b. Furthermore, the cases having lymph node metastasis showed a higher frequency of positive cytoplasmic expression than those without metastasis (P = 0.03). The p33ING1b cytoplasmic expression was positively related to PINCH expression (P = 0.04), the cases positive for both proteins had a high rate of the metastasis (P = 0.03). Conclusions: The transfer of p33ING1b protein from the nucleus to the cytoplasm may result in loss of normal cellular function of the protein, which might play a role in the tumourigenesis and metastasis of OSCCs. © 2007 Springer-Verlag.
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| 30. |
- Zhang, Sheng, et al.
(författare)
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Community-based message transmission with energy efficient in opportunistic networks
- 2016
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Ingår i: Web Information Systems Engineering – WISE 2016. - Cham : Springer International Publishing. - 9783319487434 ; , s. 411-423
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Konferensbidrag (refereegranskat)abstract
- An Opportunistic Networks is a wireless self-organized network, in which there is no need to build a fixed connectivity between source node and destination node, and the communication depends on the opportunity of node meeting. There are some classical message transmission algorithms, such as PRoPHET, MaxProp, and so on. In the Opportunity Networks with community characteristic, the different message transmission strategies can be sued in inter-community and intra-community. It improves the message successful delivery ratio significantly. The classical algorithms are CMTS and CMOT. We propose an energy efficient message forwarding algorithm (EEMF) for community-based Opportunistic Networks in this paper. When a message is transmitted, we consider not only the community characteristic, but also the residual energy of each node. The simulation results show that the EEMF algorithm can improve the message successful delivery ratio and reduce the network overhead obviously, in comparison with classical routing algorithms, such as PRoPHET, MaxProp, CMTS and CMOT. Meanwhile the EEMF algorithm can reduce the node's energy consumption and prolong the lifetime of network.
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