| 1901. |
- Hillmer, AM, et al.
(författare)
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Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
- 2011
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Ingår i: Genome research. - : Cold Spring Harbor Laboratory. - 1549-5469 .- 1088-9051. ; 21:5, s. 665-675
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Tidskriftsartikel (refereegranskat)abstract
- Somatic genome rearrangements are thought to play important roles in cancer development. We optimized a long-span paired-end-tag (PET) sequencing approach using 10-Kb genomic DNA inserts to study human genome structural variations (SVs). The use of a 10-Kb insert size allows the identification of breakpoints within repetitive or homology-containing regions of a few kilobases in size and results in a higher physical coverage compared with small insert libraries with the same sequencing effort. We have applied this approach to comprehensively characterize the SVs of 15 cancer and two noncancer genomes and used a filtering approach to strongly enrich for somatic SVs in the cancer genomes. Our analyses revealed that most inversions, deletions, and insertions are germ-line SVs, whereas tandem duplications, unpaired inversions, interchromosomal translocations, and complex rearrangements are over-represented among somatic rearrangements in cancer genomes. We demonstrate that the quantitative and connective nature of DNA–PET data is precise in delineating the genealogy of complex rearrangement events, we observe signatures that are compatible with breakage-fusion-bridge cycles, and we discover that large duplications are among the initial rearrangements that trigger genome instability for extensive amplification in epithelial cancers.
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| 1902. |
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| 1903. |
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| 1904. |
- Hossmann-Picu, A., et al.
(författare)
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Synergistic user ↔ context analytics
- 2016
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Ingår i: Advances in Intelligent Systems and Computing. - Cham : Springer International Publishing. - 2194-5365 .- 2194-5357. ; 399, s. 163-172
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Konferensbidrag (refereegranskat)abstract
- Various flavours of a new research field on (socio-)physical or personal analytics have emerged, with the goal of deriving semanticallyrich insights from people’s low-level physical sensing combined with their (online) social interactions. In this paper, we argue for more comprehensive data sources, including environmental and application-specific data, to better capture the interactions between users and their context, in addition to those among users. We provide some example use cases and present our ongoing work towards a synergistic analytics platform: a testbed based on mobile crowdsensing and IoT, a data model for representing the different sources of data and their connections, and a prediction engine for analyzing the data and producing insights.
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| 1905. |
- Hu, J., et al.
(författare)
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Detection of clenbuterol hydrochloride residuals in pork liver using a customized surface plasmon resonance bioanalyzer
- 2015
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 10:3
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Tidskriftsartikel (refereegranskat)abstract
- A surface plasmon resonance (SPR) immunoassay with an immobilization of self-assembled molecular identification membrane for the detection of residual Clenbuterol Hydrochloride (CLB) in pork liver was systematically investigated and experimentally validated for its high performance. SPR immunoassay with a regular competitive inhibition assay cannot be directly verified to detect CLB residuals. In this study, the binding of Au film with mercaptopropionic acid was investigated using the known form of the strong S-Au covalent bonds formed by the chemical radical of the mercaptopropionic acid and the Au film. After that, the immunoglobulin IgG of swine (SwIgG-CLB) was bonded with the mercaptopropionic acid by covalent -CO-NH- amide bonding. The modified comprehensive analysis of how the membrane structure works was introduced together with the customized SPR bioanalyzer. In order to evaluate the performance of this biomembrane structure, the concentrations of CLBcontained solutions of 0 ng•mL-1, 10 ng•mL-1, 20 ng•mL-1, 33.3 ng•mL-1, and 40 ng•mL-1 were prepared by adding CLB reagents into the solutions of CLB antibody (Clenbuterol Hydrochloride Antibody, CLB-Ab), successively and then the response unit (RU) was measured individually. Using the data collected from the linear CCD array, the fitting curve was established with the R-Square value of 0.9929. Correspondingly, the recovery rate ranged from 88.48% to 103.21% was experimented and the limit of detection of CLB in 1.26 ng•mL-1 was obtained efficiently. It was concluded that the detection method associated with biomembrane properties is expected to contribute much to the determination of residual CLB in pork liver quantitatively by using the customized SPR bioanalyzer. © 2015 Hu et al.
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| 1906. |
- Hu, W., et al.
(författare)
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Requires analysis based on software maintainability
- 2014
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Ingår i: ICRMS 2014 - Proceedings of 2014 10th International Conference on Reliability, Maintainability and Safety. - 9781479919925 ; , s. 354-357
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Konferensbidrag (refereegranskat)abstract
- Requirements analysis is the most important phase of the software life cycle process. Some studies have shown the most faults of software are from the requirements phase. Therefore, the quality of Software Requirements Specification has become the key to project success, which correctness, consistency, no ambiguity of software requirements specification is more important. This paper presents a classification method based on natural language processing techniques and grey similar correlation. The first step of this method is that keywords refined from various functional requirements through segmentation of natural language processing, thus made up of heavy weight vector based on the weight of functional requirements, such a functional requirement corresponds to a weight vector. The second step is that the related technology of grey system is used to compute grey correlation coefficient between two weight vectors, in order to construct a correlation matrix. Finally, the appropriate statistical tools are used to classify functional requirements statements. The clustering results based on this method can provide work guidance for requirement analysts, software developers, software testers, software maintenance.
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| 1907. |
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| 1908. |
- Huang, D., et al.
(författare)
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Electronic structure, defect properties, and optimization of the band gap of the earth-abundant and low-toxicity photovoltaic absorber Cu3SbS4
- 2022
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Ingår i: Physical Chemistry, Chemical Physics - PCCP. - : Royal Society of Chemistry (RSC). - 1463-9076 .- 1463-9084. ; 24:41, s. 25258-25269
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Tidskriftsartikel (refereegranskat)abstract
- Searching for an earth-abundant and environment-friendly absorber for thin-film solar cells that provides similar power conversion efficiency to CdTe and Cu(In,Ga)Se2 is of great importance for large-scale applications. Success would change the world's solar energy supply to an even more sustainable material resource. In this paper, we have studied by first-principles calculations the electronic structure and defect properties of the promising absorber Cu3SbS4. Its electronic properties, like direct band gap, high absorption coefficient, and light carrier effective masses, satisfy the requirements for an absorber except for its somewhat too small band gap energy. Sulfur and copper vacancies are easily formed defects in Cu3SbS4, where the S vacancy shrinks the band gap and degrades the material. This probably explains the experimental findings of a rather poor device performance. The suitable preparation conditions for Cu3SbS4 as an absorber are anticipated to be Cu-poor, Sb-moderate, and S-rich conditions. Herein, isovalent element alloying is demonstrated to be an effective way to increase the gap energy and thereby improve the material properties.
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| 1909. |
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| 1910. |
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