| 1. |
- Cheung, Henry Lok Shan, et al.
(författare)
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Denitrification, anammox, and DNRA in oligotrophic continental shelf sediments
- 2024
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Ingår i: Limnology and Oceanography. - 1939-5590 .- 0024-3590.
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Tidskriftsartikel (refereegranskat)abstract
- Continental shelf sediments are considered hotspots for nitrogen (N) removal. While most investigations have quantified denitrification in shelves receiving large amounts of anthropogenic nutrient supply, we lack insight into the key drivers of N removal on oligotrophic shelves. Here, we measured rates of N removal through denitrification and anammox by the revised-isotope pairing technique (r-IPT) along the Northeastern New Zealand shelf. Denitrification dominated total N2 production at depths between 30 and 128 m with average rates (± SE) ranging from 65 ± 28 to 284 ± 72 μmol N m−2 d−1. N2 production by anammox ranged from 3 ± 1 to 28 ± 11 μmol N m−2 d−1 and accounted for 2–19% of total N2 production. DNRA was negligible in these oligotrophic settings. Parallel microbial community analysis showed that both Proteobacteria and Planctomycetota were key taxa driving denitrification. Denitrification displayed a negative correlation with oxygen penetration depth, and a positive correlation with macrofauna abundance. Our denitrification rates were comparable to oligotrophic shelves from the Arctic, but were lower than those from nutrient-rich Pacific and Atlantic shelves. Based on our results and existing IPT measurements, the global shelf denitrification rate was reassessed to be 53.5 ± 8.1 Tg N yr−1, equivalent to 20 ± 2% of marine N removal. We suggest that previous estimates of global shelf N loss might have been overestimated due to sampling bias toward areas with high N loads in the Northern Hemisphere.
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| 2. |
- Capo, Eric, et al.
(författare)
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Oxygen-deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments
- 2022
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Ingår i: Limnology and Oceanography. - : Wiley. - 1939-5590 .- 0024-3590. ; 67:1, s. 135-146
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Tidskriftsartikel (refereegranskat)abstract
- Human-induced expansion of oxygen-deficient zones can have dramatic impacts on marine systems and its resident biota. One example is the formation of the potent neurotoxic methylmercury (MeHg) that is mediated by microbial methylation of inorganic divalent Hg (HgII) under oxygen-deficient conditions. A negative consequence of the expansion of oxygen-deficient zones could be an increase in MeHg production due to shifts in microbial communities in favor of microorganisms methylating Hg. There is, however, limited knowledge about Hg-methylating microbes, i.e., those carrying hgc genes critical for mediating the process, from marine sediments. Here, we aim to study the presence of hgc genes and transcripts in metagenomes and metatranscriptomes from four surface sediments with contrasting concentrations of oxygen and sulfide in the Baltic Sea. We show that potential Hg methylators differed among sediments depending on redox conditions. Sediments with an oxygenated surface featured hgc-like genes and transcripts predominantly associated with uncultured Desulfobacterota (OalgD group) and Desulfobacterales (including Desulfobacula sp.) while sediments with a hypoxic-anoxic surface included hgc-carrying Verrucomicrobia, unclassified Desulfobacterales, Desulfatiglandales, and uncharacterized microbes. Our data suggest that the expansion of oxygen-deficient zones in marine systems may lead to a compositional change of Hg-methylating microbial groups in the sediments, where Hg methylators whose metabolism and biology have not yet been characterized will be promoted and expand.
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| 3. |
- Albert, Séréna, et al.
(författare)
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Influence of settling organic matter quantity and quality on benthic nitrogen cycling
- 2021
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Ingår i: Limnology and Oceanography. - : Wiley. - 1939-5590 .- 0024-3590. ; 66:5, s. 1882-1895
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Tidskriftsartikel (refereegranskat)abstract
- Coastal sediments are major contributors to global carbon (C) mineralization and nutrient cycling and are tightly linked to processes in the pelagic environment. In this study, we aimed to investigate the regulating potential of quantity and quality of planktonic organic matter (OM) deposition on benthic metabolism, with a particular focus on nitrogen (N) cycling processes. We simulated inputs of spring (C : N 10.9) and summer (C : N 5.6) plankton communities in high and low quantities to sediment cores, and followed oxygen consumption, nutrient fluxes as well as nitrate reduction rates, that is, denitrification and dissimilatory nitrate reduction to ammonium for 10 d. Our results demonstrate the primary importance of OM quality in determining the fate of organic N once it settles to the sediment surface. Settling of N-rich summer plankton material resulted in a ∼ twofold lower denitrification efficiency (40–56%) compared to N-poor spring plankton (88–115%). This indicates that N-rich plankton deposition favors recycling of inorganic nutrients to the water column over N-loss via denitrification. OM quantity was positively related to mineralization activity, but this neither directly affected N fluxes nor denitrification activity, highlighting the complex interplay between the OM quantity and quality in regulating N cycling. In light of these new findings, we support the use of simple qualitative indicators such as C : N ratio of OM to investigate how future changes in benthic-pelagic coupling might influence N budgets at the sediment–water interface.
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| 4. |
- Hylén, Astrid, 1991, et al.
(författare)
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Enhanced benthic nitrous oxide and ammonium production after natural oxygenation of long-term anoxic sediments
- 2022
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 67:2, s. 419-433
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Tidskriftsartikel (refereegranskat)abstract
- Coastal and shelf sediments are central in the global nitrogen (N) cycle as important sites for the removal offixed N. However, this ecosystem service can be hampered by ongoing deoxygenation in many coastal areas.Natural reoxygenation could reinstate anoxic sediments as sites wherefixed N is removed efficiently. To investi-gate this further, we studied benthic N cycling in previously long-term anoxic sediments, following a largeintrusion of oxygenated water to the Baltic Sea. During three campaigns in 2016–2018, we measured in situsediment–waterfluxes of ammonium (NHþ4), nitrate (NO3), oxygen (O2), dissolved inorganic carbon, and NO3reduction processes using benthic chamber landers. Sediment microprofiles of O2, nitrous oxide (N2O), andhydrogen sulfide were measured in sediment cores. At a permanently oxic station, denitrification to N2was themain NO3reduction process. Benthic N2O production appeared to be linked to nitrification, although no netN2Ofluxes from the sediment were detected. At newly oxygenated sites, dissimilatory NO3reduction to NHþ4comprised almost half of the total NO3reduction. At these stations, the removal offixed N was inefficient dueto high effluxes of NHþ4. Sedimentary N2O production was associated with incomplete denitrification, account-ing for 41–88% of the total denitrification rate. Microprofiling revealed algae aggregates as potential hotspots ofseafloor N2O production. Our results show that transient oxygenation of euxinic systems initiates benthic NO3reduction, but may not lead to efficient sedimentary removal offixed N. Instead, recycling of N compounds ispromoted, which may accelerate the return to anoxia.
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| 5. |
- Winder, Monika, et al.
(författare)
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Increased appendicularian zooplankton alter carbon cycling under warmer more acidified ocean conditions
- 2017
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Ingår i: Limnology and Oceanography. - : John Wiley & Sons. - 0024-3590 .- 1939-5590. ; 62:4, s. 1541-1551
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Tidskriftsartikel (refereegranskat)abstract
- Anthropogenic atmospheric loading of CO2 raises concerns about combined effects of increasing ocean temperature and acidification, on biological processes. In particular, the response of appendicularian zooplankton to climate change may have significant ecosystem implications as they can alter biogeochemical cycling compared to classical copepod dominated food webs. However, the response of appendicularians to multiple climate drivers and effect on carbon cycling are still not well understood. Here, we investigated how gelatinous zooplankton (appendicularians) affect carbon cycling of marine food webs under conditions predicted by future climate scenarios. Appendicularians performed well in warmer conditions and benefited from low pH levels, which in turn altered the direction of carbon flow. Increased appendicularians removed particles from the water column that might otherwise nourish copepods by increasing carbon transport to depth from continuous discarding of filtration houses and fecal pellets. This helps to remove CO2 from the atmosphere, and may also have fisheries implications.
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| 6. |
- Dahl, Martin, et al.
(författare)
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Increased current flow enhances the risk of organic carbon loss from Zostera marina sediments: Insights from a flume experiment
- 2018
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Ingår i: Limnology and Oceanography. - : Wiley. - 1939-5590 .- 0024-3590. ; 63:6, s. 2793-2805
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Tidskriftsartikel (refereegranskat)abstract
- Hydrodynamic processes are important for carbon storage dynamics in seagrass meadows, where periods of increased hydrodynamic activity could result in erosion and the loss of buried carbon. To estimate hydrodynamic impacts on the resuspension of organic carbon (Corg) in seagrass-vegetated sediments, we exposed patches (0.35 × 0.35 cm) of Zostera marina (with different biomass, shoot densities, and sediment properties) to gradually increased unidirectional (current) flow velocities ranging from low (5 cm s−1) to high (26 cm s−1) in a hydraulic flume with a standardized water column height of 0.12 m. We found that higher flow velocities substantially increased (by more than threefold) the proportion of Corg in the suspended sediment resulting in a loss of up to 5.5% ± 1.7% (mean ± SE) Corg from the surface sediment. This was presumably due to increased surface erosion of larger, carbon-rich detritus particles. Resuspension of Corg in the seagrass plots correlated with sediment properties (i.e., bulk density, porosity, and sedimentary Corg) and seagrass plant structure (i.e., belowground biomass). However, shoot density had no influence on Corg resuspension (comparing unvegetated sediments with sparse, moderate, and dense seagrass bed types), which could be due to the relatively low shoot density in the experimental setup (with a maximum of 253 shoots m−2) reflecting natural conditions of the Swedish west coast. The projected increase in the frequency and intensity of hydrodynamic forces due to climate change could thus negatively affect the function of seagrass meadows as natural carbon sinks. © 2018 The Authors. Limnology and Oceanography published by Wiley Periodicals, Inc. on behalf of Association for the Sciences of Limnology and Oceanography
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| 7. |
- Natchimuthu, Sivakiruthika, et al.
(författare)
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Spatio-temporal variability of lake CH4 fluxes and its influence on annual whole lake emission estimates
- 2016
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 61
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Tidskriftsartikel (refereegranskat)abstract
- Lakes are major sources of methane (CH4) to the atmosphere that contribute significantly to the global budget. Recent studies have shown that diffusive fluxes, ebullition and surface water CH4 concentrations can differ significantly within lakesspatially and temporally. CH4 fluxes may be affected at longer scales in response to seasons, temperature, lake mixing events, short term weather events like pressure variations, shifting winds and diel cycles. Frequent measurements of fluxes in the same system and integrated assessments of the impacts of the spatio-temporal variability are rare. Thereby, large scale assessments frequently lack information on this variability which can potentially lead to biased estimates. In this study, we analysed the variability of CH4 fluxes and surface water CH4 concentrations across open water areas of lakes in a small catchment in southwest Sweden over two annual cycles. Significant patterns in CH4 concentrations, diffusive fluxes, ebullition and total fluxes were observed in space (between and within lakes) and in time (over diel cycles to years). Differences observed among the lakes can be associated with lake characteristics. The spatial variability within lakes was linked to depth or distance to stream inlets. Temporal variability was observed at diel to seasonal scales and was influenced by weather events. The fluxes increased exponentially with temperature in all three lakes, with stronger temperature dependence with decreasing depth. By comparing subsets of our data with estimates using all data we show that considering the spatio-temporal variability in CH4 fluxes is critical when making whole lake or annual budgets.
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| 8. |
- Adrian, Rita, et al.
(författare)
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Lakes as sentinels of climate change
- 2009
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 54:6(2), s. 2283-2297
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Tidskriftsartikel (refereegranskat)abstract
- While there is a general sense that lakes can act as sentinels of climate change, their efficacy has not been thoroughly analyzed. We identified the key response variables within a lake that act as indicators of the effects of climate change on both the lake and the catchment. These variables reflect a wide range of physical, chemical, and biological responses to climate. However, the efficacy of the different indicators is affected by regional response to climate change, characteristics of the catchment, and lake mixing regimes. Thus, particular indicators or combinations of indicators are more effective for different lake types and geographic regions. The extraction of climate signals can be further complicated by the influence of other environmental changes, such as eutrophication or acidification, and the equivalent reverse phenomena, in addition to other land-use influences. In many cases, however, confounding factors can be addressed through analytical tools such as detrending or filtering. Lakes are effective sentinels for climate change because they are sensitive to climate, respond rapidly to change, and integrate information about changes in the catchment.
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| 9. |
- Patriarca, Claudia, et al.
(författare)
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Character and environmental lability of cyanobacteria-derived dissolved organic matter
- 2021
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 66:2, s. 496-509
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Tidskriftsartikel (refereegranskat)abstract
- Autotrophic dissolved organic matter (DOM) is central to the carbon biogeochemistry of aquatic systems, and the full complexity of autotrophic DOM has not been extensively studied, particularly by high-resolution mass spectrometry (HRMS). Terrestrial DOM tends to dominate HRMS studies in freshwaters due to the propensity of such compounds to ionize by negative mode electrospray, and possibly also because ionizable DOM produced by autotrophy is decreased to low steady-state concentrations by heterotrophic bacteria. In this study, we investigated the character of DOM produced by the widespread cyanobacteria Microcystis aeruginosa using high-pressure liquid chromatography—electrospray ionization—high-resolution mass spectrometry. M. aeruginosa produced thousands of detectable compounds in axenic culture. These compounds were chromatographically resolved and the majority were assigned to aliphatic formulas with a broad polarity range. We found that the DOM produced by M. aeruginosa was highly susceptible to removal by heterotrophic freshwater bacteria, supporting the hypothesis that this autotroph-derived organic material is highly labile and accordingly only seen at low concentrations in natural settings.
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| 10. |
- Bonaglia, Stefano, et al.
(författare)
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Denitrification and DNRA at the Baltic Sea oxic-anoxic interface : Substrate spectrum and kinetics
- 2016
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 61:5, s. 1900-1915
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Tidskriftsartikel (refereegranskat)abstract
- The dependence of denitrification and dissimilatory nitrate reduction to ammonium (DNRA) on different electron donors was tested in the nitrate-containing layer immediately below the oxic-anoxic interface (OAI) at three stations in the central anoxic basins of the Baltic Sea. Additionally, pathways and rates of fixed nitrogen transformation were investigated with N-15 incubation techniques without addition of donors. Denitrification and anammox were always detected, but denitrification rates were higher than anammox rates. DNRA occurred at two sites and rates were two orders of magnitude lower than denitrification rates. Separate additions of dissolved organic carbon and sulfide stimulated rates without time lag indicating that both organotrophic and lithotrophic bacterial populations were simultaneously active and that they could carry out denitrification or DNRA. Manganese addition stimulated denitrification and DNRA at one station, but it is not clear whether this was due to a direct or indirect effect. Ammonium oxidation to nitrite was detected on one occasion. During denitrification, the production of nitrous oxide (N2O) was as important as dinitrogen (N-2) production. A high ratio of N2O to N-2 production at one site may be due to copper limitation, which inhibits the last denitrification step. These data demonstrate the coexistence of a range of oxidative and reductive nitrogen cycling processes at the Baltic OAI and suggest that the dominant electron donor supporting denitrification and DNRA is organic matter. Organotrophic denitrification is more important for nitrogen budgets than previously thought, but the large temporal variability in rates calls for long-term seasonal studies.
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