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- Reckermann, M., et al.
(författare)
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Human impacts and their interactions in the Baltic Sea region
- 2022
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Ingår i: Earth Syst. Dynam.. - : Copernicus GmbH. - 2190-4987 .- 2190-4979. ; 13:1, s. 1-80
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Forskningsöversikt (refereegranskat)abstract
- Coastal environments, in particular heavily populated semi-enclosed marginal seas and coasts like the Baltic Sea region, are strongly affected by human activities. A multitude of human impacts, including climate change, affect the different compartments of the environment, and these effects interact with each other. As part of the Baltic Earth Assessment Reports (BEAR), we present an inventory and discussion of different human-induced factors and processes affecting the environment of the Baltic Sea region, and their interrelations. Some are naturally occurring and modified by human activities (i.e. climate change, coastal processes, hypoxia, acidification, submarine groundwater discharges, marine ecosystems, non-indigenous species, land use and land cover), some are completely human-induced (i.e. agriculture, aquaculture, fisheries, river regulations, offshore wind farms, shipping, chemical contamination, dumped warfare agents, marine litter and microplastics, tourism, and coastal management), and they are all interrelated to different degrees. We present a general description and analysis of the state of knowledge on these interrelations. Our main insight is that climate change has an overarching, integrating impact on all of the other factors and can be interpreted as a background effect, which has different implications for the other factors. Impacts on the environment and the human sphere can be roughly allocated to anthropogenic drivers such as food production, energy production, transport, industry and economy. The findings from this inventory of available information and analysis of the different factors and their interactions in the Baltic Sea region can largely be transferred to other comparable marginal and coastal seas in the world.
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| 4. |
- Thysell, Elin, et al.
(författare)
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Metabolomic characterization of human prostate cancer bone metastases reveals increased levels of cholesterol
- 2010
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Ingår i: PLoS One. - : Public Library of Science. - 1932-6203. ; 5:12
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Tidskriftsartikel (refereegranskat)abstract
- Background: Metastasis to the bone is one clinically important features of prostate cancer (PCa). Current diagnostic methods cannot predict metastatic PCa at a curable stage of the disease. Identification of metabolic pathways involved in the growth of bone metastases therefore has the potential to improve PCa prognostication as well as therapy.Methodology/Principal Findings: Metabolomics was applied for the study of PCa bone metastases (n = 20) in comparison with corresponding normal bone (n = 14), and furthermore of malignant (n = 13) and benign (n = 17) prostate tissue and corresponding plasma samples obtained from patients with (n = 15) and without (n = 13) diagnosed metastases and from men with benign prostate disease (n = 30). This was done using gas chromatography-mass spectrometry for sample characterization, and chemometric bioinformatics for data analysis. Results were verified in a separate test set including metastatic and normal bone tissue from patients with other cancers (n = 7). Significant differences were found between PCa bone metastases, bone metastases of other cancers, and normal bone. Furthermore, we identified metabolites in primary tumor tissue and in plasma which were significantly associated with metastatic disease. Among the metabolites in PCa bone metastases especially cholesterol was noted. In a test set the mean cholesterol level in PCa bone metastases was 127.30 mg/g as compared to 81.06 and 35.85 mg/g in bone metastases of different origin and normal bone, respectively (P = 0.0002 and 0.001). Immunohistochemical staining of PCa bone metastases showed intense staining of the low density lipoprotein receptor and variable levels of the scavenger receptor class B type 1 and 3-hydroxy-3-methylglutaryl-coenzyme reductase in tumor epithelial cells, indicating possibilities for influx and de novo synthesis of cholesterol.Conclusions/Significance: We have identified metabolites associated with PCa metastasis and specifically identified high levels of cholesterol in PCa bone metastases. Based on our findings and the previous literature, this makes cholesterol a possible therapeutic target for advanced PCa.
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| 6. |
- Bergman, Daniel, et al.
(författare)
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Characterization of canine anti-mouse antibodies highlights that multiple strategies are needed to combat immunoassay interference
- 2019
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Immunoassays are widely used for detection and quantification of analytes in biological samples, but are vulnerable to analytical errors caused by interfering sample substances. Of particular interest are endogenous anti-animal antibodies that may bind to the immunoassay antibodies and cause erroneous test results. This phenomenon is a hazard to patient safety in both human and veterinary medicine. Here, we demonstrate that anti-mouse antibodies in dogs bind selectively to different regions of the murine IgG molecule, cross-react with IgG from different species, and consist of all major antibody classes present in canine serum (IgA, IgG and IgM). The antibody characteristics varied among individuals and their prevalence differed between two dog breeds. The selective binding to different IgG regions suggests that the antibodies might not originate from immunization through exposure to mice or other species. These findings show that canine anti-mouse antibodies are highly heterogeneous in nature and therefore require a combination of strategies to be counteracted.
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| 7. |
- Bergström, Lena, et al.
(författare)
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Provfiske efter strömming i södra Bottenhavet – översikt av äldre studier och återbesök 2022
- 2023
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Strömmingen (Clupea harengus membras) är en nyckelart i Bottenhavets ekosystem och en bas för traditionellt kustnära fiske, men det kustnära yrkesfisket har rapporterat att fångsterna av strömming i södra Bottenhavets kustområden har minskat mycket påtagligt. Analyser av data från utsjön bekräftar att förekomsten av större strömming har minskat, men det är en brist på fiskerioberoende data för kustnära vatten som kan belysa förändringar i strömmingsbestånden. Den här rapporten syftar till att sammanställa information om äldre kustprovfisken i Bottenhavets kustområden, som skulle kunna användas i detta syfte, samt bidra till att belysa hur förekomsten av strömming har förändrats över tid genom jämförelser mellan nu och då.Sammanställningen visar att det finns data som skulle kunna användas för att påvisa hur den kustnära förekomsten av strömming har förändrats över tid från provfisken i Forsmark och Finbo sedan 1970-talet. Provfiskena är utförda med varierande metodik och redskap. Dessa fisken utförs dock inte längre.Ett återbesök till en av de tidigare stationerna vid Forsmark visade att medelfångsten av strömming under vår och försommar år 2022 var påtagligt mindre än vid motsvarande årstid under 1970- och 1980-talen. Den totala fångsten strömming år 2022 var endast 8 procent av fångsten i medeltal de tidigare åren, 1975–1988. Skillnaden var ännu mer tydlig för strömming av större storlek. Av den strömming som fångades vid Forsmark år 2022 var ingen fisk större än 25 cm. Medelfångsten vid en station vid Finbo, Åland, som också återbesöktes år 2022, var av samma omfattning som de tidigare åren, och i fångsten år 2022 ingick även strömmingar av större storleksklasser. Resultaten belyser även vikten av sammanhängande tidsserier. Vid både Forsmark och Finbo fanns stor mellanårsvariation i data från de tidigare åren, vilket är viktigt att ta med i bedömningen av 2022 års data, som är baserad på upprepade provfisken vid endast en station och ett år. En upprepning av tidigare utförda provfisken under fler år och på fler stationer skulle ge en säkrare bild av beståndens biologiska status idag. Resultaten för 2022 stöder dock den minskning som rapporterats från yrkesfisket.
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| 8. |
- Bezerra Lima Verde, Isabel, et al.
(författare)
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Sperm Quality in Young Bull Semen Can Be Improved by Single Layer Centrifugation
- 2022
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Ingår i: Animals. - : MDPI AG. - 2076-2615. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- Simple Summary Genomic selection enables bulls with desirable genes to be identified early in life. Livestock producers need to use the semen from young bulls as early as possible for efficient milk and meat production with fewer greenhouse gas emissions. However, semen from young bulls is often of lower quality than needed for freezing for commercial artificial insemination. Colloid centrifugation selects spermatozoa with the desirable characteristics needed for fertilization from the rest of the ejaculate. In this study, split ejaculates from young bulls were prepared with or without colloid centrifugation. Using this technique, sperm doses of acceptable quality for artificial insemination could be produced from ejaculates that would otherwise be discarded. Thus, the semen from young bulls would be usable for artificial insemination sooner than is currently the case. Interest in using semen from young bulls is increasing due to identifying promising animals by genomic selection. However, sperm quality in these ejaculates may not reach currently accepted standards for the cattle breeding industry. The purpose of this study was to determine if centrifugation of semen from young bulls through the Bovicoll colloid could improve sperm quality sufficiently for the frozen semen to be acceptable for artificial insemination. Ejaculates from 19 young bulls were split and either processed by Single-Layer Centrifugation (SLC) or not (CON) before freezing. After thawing, sperm quality was evaluated by determination of membrane integrity, mitochondrial membrane potential, DNA integrity, production of reactive oxygen species, sperm morphology and motility. Approximately half of the CON samples reached acceptable post-thaw quality (membrane integrity >= 40%) despite being below the breeding company ' s desired sperm concentration threshold pre-freezing. In the remaining samples, sperm quality was improved by SLC such that 45% of them reached acceptable quality post-thaw. Almost 75% of the young bull sperm samples could have produced usable frozen semen doses by adjusting the breeding company ' s current processing protocols. Since lowering the generation interval has a direct effect on the genetic gain per year, SLC could aid genetic progress in cattle breeding.
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| 9. |
- Brun, Anders, 1976-, et al.
(författare)
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Similar Tensor Arrays : A Framework for Storage of Tensor Array Data
- 2009. - 1
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Ingår i: Tensors in Image Processing and Computer Vision. - London : Springer. - 9781848822986 - 9781848822993 ; , s. 407-428
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- Abstract This chapter describes a framework for storage of tensor array data, useful to describe regularly sampled tensor fields. The main component of the framework, called Similar Tensor Array Core (STAC), is the result of a collaboration between research groups within the SIMILAR network of excellence. It aims to capture the essence of regularly sampled tensor fields using a minimal set of attributes and can therefore be used as a “greatest common divisor” and interface between tensor array processing algorithms. This is potentially useful in applied fields like medical image analysis, in particular in Diffusion Tensor MRI, where misinterpretation of tensor array data is a common source of errors. By promoting a strictly geometric perspective on tensor arrays, with a close resemblance to the terminology used in differential geometry, (STAC) removes ambiguities and guides the user to define all necessary information. In contrast to existing tensor array file formats, it is minimalistic and based on an intrinsic and geometric interpretation of the array itself, without references to other coordinate systems.
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| 10. |
- Brunberg, Emma, et al.
(författare)
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Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks – Evidence of a Tail Biting Resistant Phenotype
- 2013
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Ingår i: PLOS ONE. - : Public Library of Science. - 1932-6203. ; 8:6
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Tidskriftsartikel (refereegranskat)abstract
- Abnormal tail biting behaviour is a major welfare problem for pigs receiving the behaviour, as well as an indication of decreased welfare in the pigs performing it. However, not all pigs in a pen perform or receive tail biting behaviour and it has recently been shown that these ‘neutral’ pigs not only differ in their behaviour, but also in their gene expression compared to performers and receivers of tail biting in the same pen. To investigate whether this difference was linked to the cause or a consequence of them not being involved in the outbreak of tail biting, behaviour and brain gene expression was compared with ‘control’ pigs housed in pens with no tail biting. It was shown that the pigs housed in control pens performed a wider variety of pig-directed abnormal behaviour (belly nosing 0.95±1.59, tail in mouth 0.31±0.60 and ‘other‘ abnormal 1.53±4.26; mean±S.D) compared to the neutral pigs (belly nosing 0.30±0.62, tail in mouth 0.13±0.50 and “other“ abnormal 0.42±1.06). With Affymetrix gene expression arrays, 107 transcripts were identified as differently expressed (p<0.05) between these two categories of pigs. Several of these transcripts had already been shown to be differently expressed in the neutral pigs when they were compared to performers and receivers of tail biting in the same pen in an earlier study. Hence, the different expression of these genes cannot be a consequence of the neutral pigs not being involved in tail biting behaviour, but rather linked to the cause contributing to why they were not involved in tail biting interactions. These neutral pigs seem to have a genetic and behavioural profile that somehow contributes to them being resistant to performing or receiving pig-directed abnormal behaviour, such as tail biting, even when housed in an environment that elicits that behaviour in other pigs.
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