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- 2019
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Tidskriftsartikel (refereegranskat)
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- Andersen, Felicie F., et al.
(författare)
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Assembly and structural analysis of a covalently closed nano-scale DNA cage
- 2008
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Ingår i: Nucleic Acids Research. - : Oxford University Press (OUP). - 0305-1048 .- 1362-4962. ; 36:4, s. 1113-1119
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Tidskriftsartikel (refereegranskat)abstract
- The inherent properties of DNA as a stable polymer with unique affinity for partner mols. detd. by the specific Watson-Crick base pairing makes it an ideal component in self-assembling structures. This has been exploited for decades in the design of a variety of artificial substrates for investigations of DNA-interacting enzymes. More recently, strategies for synthesis of more complex two-dimensional (2D) and 3D DNA structures have emerged. However, the building of such structures is still in progress and more experiences from different research groups and different fields of expertise are necessary before complex DNA structures can be routinely designed for the use in basal science and/or biotechnol. Here we present the design, construction and structural anal. of a covalently closed and stable 3D DNA structure with the connectivity of an octahedron, as defined by the double-stranded DNA helixes that assembles from eight oligonucleotides with a yield of .apprx.30%. As demonstrated by Small Angle X-ray Scattering and cryo-Transmission Electron Microscopy analyses the eight-stranded DNA structure has a central cavity larger than the apertures in the surrounding DNA lattice and can be described as a nano-scale DNA cage, Hence, in theory it could hold proteins or other bio-mols. to enable their investigation in certain harmful environments or even allow their organization into higher order structures.
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| 5. |
- Lundholm, Nina, et al.
(författare)
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Buried alive - Germination of up to a century-old marine protist resting stages
- 2011
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Ingår i: Phycologia. - : Informa UK Limited. - 0031-8884 .- 2330-2968. ; 50:6, s. 629-640
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Tidskriftsartikel (refereegranskat)abstract
- report on the survival and germination of up to a century-old marine protist resting stages naturally preserved insediments from Koljö Fjord on the west coast of Sweden. This work has focused on germination of dinoflagellate cysts,but diatom resting stages were also observed. We record the longest known survival of dormant dinoflagellate cells. Weindividually isolated more than 1200 cysts of the three most abundant dinoflagellate taxa: Pentapharsodinium dalei,Lingulodinium polyedrum and Scrippsiella spp. Germination success decreased with core depth, and all successfulgerminations took place within the first 2 wk of incubation. Pentapharsodinium dalei had the highest germination successrate, with a maximum of up to 80% in 28-yr-old sediment, and could successfully germinate from core sediments datedto 1920 ± 12. Scrippsiella spp. cysts with cell contents occurred down to c. 90-yr-old sediment and could germinate fromdown to ca. 40-yr-old sediments, with a maximum germination rate of 50-60% in recent sediments. Cysts of L.polyedrum germinated frequently down to 20 yr and rarely to c. 80 yr, with a maximum of 20-50% germination successin recent sediments. Cyst isolation under cooled conditions rather than at room temperature resulted in a significantlyhigher germination success in P. dalei, while no effect was observed for L. polyedrum. The time elapsed since slicing ofthe core affected survival of L. polyedrum cysts negatively, most likely due to the effect of oxygen. The long-termsurvival potential of benthic resting stages that we report here has important implications, as viable resting stagesaccumulated in bottom sediments can be transported back to the water column by, for example, bioturbation andhuman-mediated sediment dredging. Hence, the sediment may to a higher degree than previously considered play a roleas seed bank. This is important in a changing climate and might have particularly severe impacts in the case of harmful species.
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- Ågerstrand, Marlene, et al.
(författare)
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A call for action : Improve reporting of research studies to increase the scientific basis for regulatory decision-making
- 2018
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Ingår i: Journal of Applied Toxicology. - : Wiley. - 0260-437X .- 1099-1263. ; 38:5, s. 783-785
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Tidskriftsartikel (refereegranskat)abstract
- This is a call for action to scientific journals to introduce reporting requirements for toxicity and ecotoxicity studies. Such reporting requirements will support the use of peer-reviewed research studies in regulatory decision-making. Moreover, this could improve the reliability and reproducibility of published studies in general and make better use of the resources spent in research.
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| 7. |
- Abrahamsson, Victor, et al.
(författare)
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Determination of Sulfite in Beer Based on Fluorescent Derivatives and Liquid Chromatographic Separation
- 2012
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Ingår i: Journal of the American Society of Brewing Chemists. - 0361-0470 .- 1943-7854. ; 70:4, s. 296-302
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Tidskriftsartikel (refereegranskat)abstract
- A method was developed for quantification of sulfite in beer based on derivatization with the maleimide-derived probe ThioGlo I followed by separation of fluorescent adducts by reversed-phase high-performance liquid chromatography and fluorescence detection. Sulfite gave two ThioGlo 1 derivatives and it was shown by mass spectrometry that both had identical mass spectra. Matrix effects were observed when constructing sulfite standard curves in different beers and, therefore, use of a matrix-matched calibration curve is proposed. ThioGlo I was found to generate fluorescent adducts with both bound and free sulfite, providing a quantification of the total sulfite content in beer. The limit of quantification of sulfite was 0.6 mg/L and the method can be used for quantification of sulfite in highly colored beers.
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| 8. |
- Côté, Marianne, et al.
(författare)
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Towards modeling data-poor lakes at the regional scale using parameters from data-rich lakes and relationships to lake characteristics
- 2024
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Ingår i: Inland Waters. - : Taylor & Francis. - 2044-2041 .- 2044-205X.
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Tidskriftsartikel (refereegranskat)abstract
- Lakes pivotal for recreation and economically relevant activities are often remote and not well studied, which hinders the application of predictive lake models for their management. Here, we provide an approach to simulate—by means of the process-oriented model MyLake—water temperature, ice cover duration, dissolved oxygen, and light attenuation in 198 data-poor lakes based on parameters obtained for a subgroup of 12 data-rich lakes and morphometric data. Specifically, the model is first calibrated using a genetic algorithm on well-studied lakes. Simple relationships between the fitted parameters and lake-catchment morphometric properties are then derived, and the results of simulations using fitted and derived parameters are compared. The loss in goodness-of-fit, expressed as root mean square error (RMSE) incurred by using estimated rather than calibrated parameters, is 0.17 °C for water temperature and 0.82 mg L−1 for dissolved oxygen. These general relationships are then used to provide the model parameters for 198 data-poor lakes distributed throughout Sweden and to model these lakes. Overall, this proof of concept allows simulating lakes selected based on their relevance for lake management rather than based on the availability of extensive field datasets.
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