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- Verschut, Thomas Alexander, 1988-
(författare)
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Searching for food in complex environments : Integrating processes at multiple spatial scales
- 2017
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Resources are often unevenly distributed through the environment, resulting in a challenging task for insects to locate food, mates and oviposition sites. Consequently, there is an ongoing need to unravel how insects rely on behavioural and sensory traits while searching for resources in heterogeneous environments. In the first part of this thesis, I addressed this issue by studying how neighbouring resources can affect the likelihood of insects finding their preferred host resources. These effects of neighbouring resources are commonly referred to as associational effects, and are expected to result from limitations in the sensory physiology of insects. Such limitations constrain the insect’s ability to correctly evaluate resource quality at the different steps involved in insect search behaviour. Furthermore, I determined whether the physiological state of an insect, and sensory experiences made during larval stages, can affect host search behaviour in heterogeneous environments.By comparing the behaviour of Drosophila melanogaster in environments with single and multiple resources, I found that the presence of neighbouring recourses increased the selection rates for attractive resources, while it decreased the selection rates for less attractive resources. These effects are referred to as associational susceptibility and associational resistance respectively. Furthermore, by studying oviposition behaviour, I found that during these small-scale behavioural decisions, associational effects are mainly governed by gustatory mediated selection and less by olfactory mediated selection. The oviposition assay eliminated potential misinterpretations of resource quality along the different steps of search behaviour, hence the results suggested that associational effects rely on distinctive selection behaviour between resource types rather than on sensory constraints.In the second part of this thesis I determined whether natal experiences can be used by insects as sensory shortcuts to find host resources, and whether this leads to better larval performance on those selected host resources. For this purpose, I studied the interactions between the larval parasitoid Asecodes lucens and the oligophagous leaf beetle Galerucella sagittariae. The results showed that the relationship between oviposition preference and larval performance, of both insect species, depends on an interactive effect between the insects’ natal origin and the quality of the different host resources. Moreover, I found that the natal origin was a better predictor for the adult host preference, rather than for larval performance. This suggests that, aside from the actual quality of the host resources, locating any suitable host might be even more limiting for the female’s fitness.
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| 2. |
- Anderson, Lakin
(författare)
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Tensions in Transdisciplinary Research : A study of a climate research group
- 2023
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- In a time of sustainability predicaments and ‘grand challenges’, transdisciplinarity has been put forward as an approach through which researchers can engage with societal transformation for a better world. This study examines tensions that arise in the on-the-ground efforts of researchers to establish and manage a transdisciplinary research group within a Norwegian university. Tensions have been of interest in both studies of science and studies of organizations. Scholars have inquired into the ways in which tensions between interrelated, divergent demands influence the work of scientific knowledge production and organizational life. Transdisciplinary research groups, centers and institutes are proliferating, yet studies of the tensions and challenges they face at the micro-level remain nascent. Drawing on intermittent fieldwork over a two-year period, this dissertation analyses a local case in which climate and energy researchers took a transdisciplinary approach in establishing a “societally engaged” research group and research center in a social sciences department. Key questions are: which tensions do they encounter? How do they respond to them? The study makes use of concepts on tensions and paradox developed in organization and management studies to inform discussions on challenges in inter- and trans-disciplinary research in practice. The case study identifies, illustrates, and analyses several tensions salient for researchers: between the need for both consolidation and interrelation; between the need to grow and formalise the group while also maintaining its closeness and values; between ideas of researchers’ relationship to societal change as both distant and engaged; and between the need to maintain academic autonomy while providing usefulness to non-academic actors. Various responses to these tensions are identified and explored, including defending against, and actively embracing them. The findings allow for rethinking transdiscipclinary research in practice, with implications for research managers, practitioners, and policy makers.
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| 3. |
- Blid, Jan, 1970-
(författare)
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Asymmetric [2,3]-Sigmatropic Rearrangement of Allylic Ammonium Ylides
- 2005
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The thesis describes the realization of an asymmetric [2,3]-sigmatropic rearrangement of achiral allylic amines. It is divided into two parts; the first part deals with the development of a Lewis acid-mediated [2,3]-sigmatropic rearrangement and the second the asymmetric version thereof. Quaternization of an -amino amide with various Lewis acids established BBr3 and BF3 to be the most appropriate ones. Various allylic amines were subsequently rearranged into the corresponding homoallylic amines in good to excellent syn-diastereoselectivities, revealing the endo-transition state to be the preferred pathway. The structures of the intermediate Lewis acid-amine complexes were confirmed by NMR spectroscopy studies and DFT calculations. Based on this investigation a chiral diazaborolidine was chosen as Lewis acid and was shown to efficiently promote the asymmetric [2,3]-sigmatropic rearrangement furnishing homoallylic amines in good yields and excellent enantiomeric excesses. In contrast to the achiral rearrangement mediated by BBr3 and BF3, the asymmetric version gave the opposite major diastereomer, revealing a preference for the exo-transition state in the asymmetric rearrangement. To account for the observed selectivities, a kinetic and thermodynamic pathway was presented. On the basis of a deuterium exchange experiment on a rearranged Lewis acid-amine complex and an NMR spectroscopic investigation, the kinetic pathway was shown to be favored.
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| 4. |
- Dodig-Crnković, Tea
(författare)
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On the application and validation of multiplexed affinity assays
- 2020
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Proteins are essential macromolecules that carry out complex functions in human cells, tissues, and organs. They regulate a diverse set of biological processes and protect against pathogens. However, dysregulation or malformation of proteins can cause disease. By characterizing proteins in health and disease, we can gain insights into disease aetiology and identify druggable targets to treat disorders. By bringing protein discoveries from the research lab into clinical practice, protein assays have been and will continue to be important tools for enabling and improving medical decision-making. The work presented in this thesis concerns both exploratory and targeted affinity-based assays applied for the study of proteins. High-throughput and multiplexed suspension bead arrays have been the primary technology for measuring proteins with antibodies in samples such as human blood. Identification and validation of protein-protein interactions that may provide novel insights into the druggable proteome have also been carried out. Throughout the projects, methods for validating the observations have been pursued and include replication in independent sample sets, as well as the assessment of antibody selectivity via other proteomics assays or orthogonal methods such as genetic associations. In Paper I, we used multiplexed exploratory antibody arrays comprising almost 1.500 affinity binders to study proteins that circulate in plasma. Here, the focus was to determine the longitudinal variability of proteins. We analysed samples from 101 clinically healthy individuals, collected each third month for one year. The protein data provided insights into inter-individual diversity and the unique molecular fingerprint of each participant. We found that 49% of the studied proteins were stable across one year, as these had low variability in each individual. Eight modules, each containing 11-242 proteins, were found to co-vary across one year. We also found genetic variations to influence 15 of the detected protein profiles and confirmed selected indications in an independent set of 3.000 subjects. In summary, we observed the existence of individual-specific protein profiles and found that short-term and continuous changes occurred in almost every participant. In Paper II, we investigated blood-derived serum and plasma to identify age-associated proteins. We started from a large set of exploratory antibody bead arrays to screen 156 individuals aged 50-92 years. We found protein profiles of the histidine-rich glycoprotein (HRG) to be significantly associated with age. This association was further corroborated by the analysis of >4.000 individuals from eight additional and independent sets of blood samples. We further validated the HRG protein profiles by sandwich assays and protein microarrays developed in-house. Comparing genetic data and HRG profiles obtained by two independent antibodies, we observed strong but inverse associations to the genetic variants for two anti-HRG antibodies. In Paper III, we applied multiplexed assays for the detection of autoantibodies against cancer-testis antigens (CTAs) in 133 non-small cell lung cancer (NSCLC) patients. We found reactivity against 29 unique CTAs exclusively in cases, compared to 57 matched controls with benign lung diseases. The presence of six CTAs was further confirmed in an independent set of 34 NSCLC cases. Analysis of longitudinal samples from seven patients demonstrated that the presence of CTA autoantibodies was stable over time for each of the individuals. In Paper IV, we developed a novel multiplexed sandwich-immunoassay for the detection of interaction partners to G-protein coupled receptors (GPCRs). This pharmaceutically important family of membrane proteins is believed to be regulated by another group of receptor activity-modulating proteins (RAMPs) by the formation of protein complexes. We studied cell lysates expressing combinations of 23 GPCRs with three RAMPs. We confirmed most of the previously reported interaction pairs and additionally found evidence for 15 new GPCR-RAMP complexes. All interactions were validated using epitope tags that were engineered onto the proteins. Selected complexes were further validated by in situ proximity ligation assays performed in cell membranes. In summary, the work included in this thesis describes the use of multiplexed affinity-based assays for research within plasma proteomics and the interrogation of protein complexes. The work highlights the method’s potential for the identification of circulating proteins that may aid and add to the current knowledge about human health and disease.
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| 5. |
- Stålnacke, Johanna, 1967-
(författare)
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Rough beginnings : Executive function in adolescents and young adults after preterm birth and repeat antenatal corticosteroid treatment
- 2014
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- This thesis investigates long-term cognitive outcome in two cohorts of adolescents and young adults exposed to stressors during the perinatal period: one group born preterm (<37 weeks of gestation and birth weight <1,500 g); one group exposed to two or more courses of antenatal corticosteroids (ACS), to stimulate lung maturation in the face of threatening preterm birth. In fetal life the brain undergoes dramatic growth, and a disruption to the early establishment of functional neural networks may interrupt development in ways that are difficult to predict. Executive function refers to a set of cognitive processes that are important for purposeful regulation of thought, emotion, and behavior, and even a subtle depreciation may influence overall functioning. Study I investigated the stability of executive function development after preterm birth. Executive functions were differentiated into working memory and cognitive flexibility. Both components were highly stable from preschool age to late adolescence. In Study II, we identified subgroups within the group of children born preterm with respect to cognitive profiles at 5½ and 18 years, and identified longitudinal streams. Outcome after preterm birth was diverse, and insufficiently predicted by perinatal and family factors. Individuals performing at low levels at 5½ years were unlikely to improve over time, while a group of individuals performing at or above norm at 5½ years had improved their performance relative to term-born peers by age 18. Studies I and II pointed to the need for developmental monitoring of those at risk, prior to formal schooling. Study III investigated long-term cognitive outcome after repeat ACS treatment. The study did not provide support for the concern that repeat ACS exposure will have an adverse impact on cognitive function later in life. In sum, exposure to perinatal stressors resulted in great variation in outcome. However, for many, their rough beginnings had not left a lasting mark.
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