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- 2019
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Tidskriftsartikel (refereegranskat)
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| 3. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 4. |
- Aad, G., et al.
(författare)
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- 2016
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Ingår i: Physical Review D. Particles and fields. - : American Physical Society. - 0556-2821 .- 1089-4918. ; 93:1
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Tidskriftsartikel (refereegranskat)
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| 5. |
- Kristan, Matej, et al.
(författare)
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The Sixth Visual Object Tracking VOT2018 Challenge Results
- 2019
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Ingår i: Computer Vision – ECCV 2018 Workshops. - Cham : Springer Publishing Company. - 9783030110086 - 9783030110093 ; , s. 3-53
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Konferensbidrag (refereegranskat)abstract
- The Visual Object Tracking challenge VOT2018 is the sixth annual tracker benchmarking activity organized by the VOT initiative. Results of over eighty trackers are presented; many are state-of-the-art trackers published at major computer vision conferences or in journals in the recent years. The evaluation included the standard VOT and other popular methodologies for short-term tracking analysis and a “real-time” experiment simulating a situation where a tracker processes images as if provided by a continuously running sensor. A long-term tracking subchallenge has been introduced to the set of standard VOT sub-challenges. The new subchallenge focuses on long-term tracking properties, namely coping with target disappearance and reappearance. A new dataset has been compiled and a performance evaluation methodology that focuses on long-term tracking capabilities has been adopted. The VOT toolkit has been updated to support both standard short-term and the new long-term tracking subchallenges. Performance of the tested trackers typically by far exceeds standard baselines. The source code for most of the trackers is publicly available from the VOT page. The dataset, the evaluation kit and the results are publicly available at the challenge website (http://votchallenge.net).
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| 6. |
- Xu, Dongdong, et al.
(författare)
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A design concept of amphiphilic molecules for directing hierarchical porous zeolite
- 2016
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Ingår i: New Journal of Chemistry. - : Royal Society of Chemistry (RSC). - 1144-0546 .- 1369-9261. ; 40:5, s. 3982-3992
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Forskningsöversikt (refereegranskat)abstract
- Aluminosilicate zeolites with hierarchically porous systems have attracted special scientific interest due to their advantages in bulky molecule catalysis. Organic amphiphilic molecules or surfactants are frequently employed in the hydrothermal syntheses of porous zeolites for the construction of enhanced pore systems (mesopores or macropores) beyond sole micropores. This review describes a design concept of novel amphiphilic molecules for a one-step preparation of hierarchically porous zeolites containing mesopores with certain orders. Via a structural-directing mechanism study of the most common surfactant (cetyltrimethyl ammonium bromide, CTAB) in the synthesis of bulk zeolite MFI (zeolite framework code given by the International Zeolite Association), aromatic groups were grafted into the hydrophobic tail of the amphiphilic molecule. Due to the pi-pi stacking of the aromatic groups and a geometrical match between their arrangement and the zeolitic framework, single-crystalline zeolite nanosheets (SCZNs) were successfully synthesized. Furthermore, following the same idea for the design, bolaform and triply branched amphiphilic molecules with aromatic groups were also prepared and used for the formation of SCZNs with a 90 degrees rotational boundary and single-crystalline mesoporous ZSM-5 with three-dimensional pores, respectively. This design concept will provide a new insight into the molecular factors for governing the simultaneous fabrication of ordered meso-and micro-phases.
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| 7. |
- Xu, Dongdong, et al.
(författare)
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pi-pi interaction of aromatic groups in amphiphilic molecules directing for single-crystalline mesostructured zeolite nanosheets
- 2014
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 5
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Tidskriftsartikel (refereegranskat)abstract
- One of the challenges in material science has been to prepare macro-or mesoporous zeolite. Although examples of their synthesis exist, there is a need for a facile yet versatile approach to such hierarchical structures. Here we report a concept for designing a single quaternary ammonium head amphiphilic template with strong ordered self-assembling ability through pi-pi stacking in hydrophobic side, which stabilizes the mesostructure to form single-crystalline mesostructured zeolite nanosheets. The concept is demonstrated for the formation of a new type of MFI (zeolite framework code by International Zeolite Association) nanosheets joined with a 90 degrees rotational boundary, which results in a mesoporous zeolite with highly specific surface area even after calcination. Low binding energies for this self-assembling system are supported by a theoretical analysis. A geometrical matching between the arrangement of aromatic groups and the zeolitic framework is speculated for the formation of single-crystalline MFI nanosheets.
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| 8. |
- Qiu, Minghui, et al.
(författare)
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Observation of Feshbach Resonances in the F + H2 → HF + H Reaction
- 2006
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 311:5766, s. 1440-1443
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Tidskriftsartikel (refereegranskat)abstract
- Reaction resonances, or transiently stabilized transition-state structures, have proven highly challenging to capture experimentally. Here, we used the highly sensitive H atom Rydberg tagging time-of-flight method to conduct a crossed molecular beam scattering study of the F + H2 → HF + H reaction with full quantum-state resolution. Pronounced forward-scattered HF products in the v′ = 2 vibrational state were clearly observed at a collision energy of 0.52 kcal/mol; this was attributed to both the ground and the first excited Feshbach resonances trapped in the peculiar HF(v′ = 3)-H′ vibrationally adiabatic potential, with substantial enhancement by constructive interference between the two resonances.
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| 9. |
- Xiong, Yan, et al.
(författare)
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Small molecule Z363 co-regulates TAF10 and MYC via the E3 ligase TRIP12 to suppress tumour growth
- 2023
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Ingår i: CLINICAL AND TRANSLATIONAL MEDICINE. - : JOHN WILEY & SONS LTD. - 2001-1326. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundThe MYC oncoprotein, also known as the master regulator of genes, is a transcription factor that regulates numerous physiological processes, including cell cycle control, apoptosis, protein synthesis and cell adhesion, among others. MYC is overexpressed in approximately 70% of human cancers. Given its pervasive role in cancer biology, MYC down-regulation has become an attractive cancer treatment strategy. MethodsThe CRISPR/Cas9 method was used to produce KO cell models. Western blot was used to analyzed the expressions of MYC and TATA-binding proteinassociated factors 10 (TAF10) in cancer cells (MCF7, A549, HepG2 cells) Cell culture studies were performed to determine the mechanisms by which small molecules (Z363119456, Z363) affects MYC and TAF10 expressions and functions. Mouse studies were carried out to investigate the impact of Z363 regulation on tumor growth. ResultsZ363 activate Thyroid hormone Receptor-interacting Protein 12 (TRIP12), which phosphorylates MYC at Thr58, resulting in MYC ubiquitination and degradation and thereby regulating MYC target genes. Importantly, TRIP12 also induces TAF10 degradation, which reduces MYC protein levels. TRIP12, an E3 ligase, controls MYC levels both directly and indirectly by inhibiting MYC or TAF10 activity. ConclusionsIn summary,these results demonstrate the anti-cancer properties of Z363, a small molecule that is co-regulated by TAF10 and MYC.
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| 10. |
- Yue, Shichao, et al.
(författare)
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A Skin-Inspired PDMS Optical Tactile Sensor Driven by a Convolutional Neural Network
- 2024
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Ingår i: IEEE Sensors Journal. - : Institute of Electrical and Electronics Engineers (IEEE). - 1530-437X .- 1558-1748. ; 24:6, s. 8651-8660
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Tidskriftsartikel (refereegranskat)abstract
- Tactile sensors play a crucial role in enhancing the integration of automation, robotics, and biomedical equipment, particularly in perceptual functions. Optical fiber-based tactile sensors have gained significance due to their robustness and immunity to electromagnetic interference. However, existing optical fiber-based tactile sensors face limitations related to bio-imitation, scalability, and precise data processing algorithms. This study introduces a novel skin-inspired polydimethylsiloxane (PDMS)-manufactured tactile sensor utilizing a structured light source with low-cost light-emitting diodes and a multimode optical fiber, coupled with tactile information processing through a trained convolutional neural network (CNN). Specklegram images captured from the optical fiber are analyzed for force amplitude and tactile location. The CNN is trained, validated, and tested, achieving accuracies of 99.6%, 99.5%, and 99%, respectively. The tactile sensor demonstrates a spatial resolution of 2 mm and a force-sensing range up to 3 N. The confusion matrix, based on classification results, reveals only three misclassifications out of 315 tests, indicating a mean absolute error (MAE) of 0.95%. The spatial resolution and force-sensing capabilities, coupled with the machine learning approach of the proposed tactile sensor, showcase promising potential for future applications in tactile embodiment.
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