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- Zamora, Juan Carlos, et al.
(författare)
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- 2018
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Ingår i: IMA Fungus. - : INT MYCOLOGICAL ASSOC. - 2210-6340 .- 2210-6359. ; 9:1, s. 167-185
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Tidskriftsartikel (refereegranskat)abstract
- Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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| 2. |
- Dastoor, Ashu, et al.
(författare)
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Arctic mercury cycling
- 2022
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Ingår i: Nature Reviews Earth & Environment. - : Springer Nature. - 2662-138X. ; 3:4, s. 270-286
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Forskningsöversikt (refereegranskat)abstract
- Anthropogenic mercury (Hg) emissions have driven marked increases in Arctic Hg levels,which are now being impacted by regional warming, with uncertain ecological consequences. This Review presents a comprehensive assessment of the present-day total Hg mass balance in the Arctic. Over 98% of atmospheric Hg is emitted outside the region and is transported to the Arctic via long-range air and ocean transport. Around two thirds of this Hg is deposited in terrestrial ecosystems, where it predominantly accumulates in soils via vegetation uptake. Rivers and coastal erosion transfer about 80 Mg year−1 of terrestrial Hg to the Arctic Ocean, in approximate balance with modelled net terrestrial Hg deposition in the region. The revised Arctic Ocean Hg mass balance suggests net atmospheric Hg deposition to the ocean and that Hg burial in inner-shelf sediments is underestimated (up to >100%), needing seasonal observations of sediment-oceanHg exchange. Terrestrial Hg mobilization pathways from soils and the cryosphere (permafrost, ice, snow and glaciers) remain uncertain. Improved soil, snowpack and glacial Hg inventories, transfer mechanisms of riverine Hg releases under accelerated glacier and soil thaw, coupled atmosphere– terrestrial modelling and monitoring of Hg in sensitive ecosystems such as fjords can help toanticipate impacts on downstream Arctic ecosystems.
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| 3. |
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| 4. |
- Silva, William, et al.
(författare)
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Life cycle bioenergetics of the gray seal (Halichoerus grypus) in the Baltic Sea: Population response to environmental stress
- 2020
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Ingår i: Environment International. - : Elsevier. - 0160-4120 .- 1873-6750. ; 145
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Tidskriftsartikel (refereegranskat)abstract
- Wildlife population dynamics are shaped by multiple natural and anthropogenic factors, including predation, competition, stressful life history events, and external environmental stressors such as diseases and pollution. Marine mammals such as gray seals rely on extensive blubber layers for insulation and energy storage, making this tissue critical for survival and reproduction. This lipid rich blubber layer also accumulates hazardous fat soluble pollutants, such as polychlorinated biphenyls (PCBs), that can directly impact adipose function or be mobilized during periods of negative energy balance or transferred to offspring to exert further impacts on target tissues or vulnerable life stages. To predict how marine mammals will respond to ecological and anthropogenic stressors, it is necessary to use process-based modelling approaches that integrate environmental inputs, full species life history, and stressor impacts with individual dynamics of energy intake, storage, and utilization. The purpose of this study was to develop a full lifecycle dynamic energy budget and individual based model (DEB-IBM) that captured Baltic gray seal physiology and life history, and showcase potential applications of the model to predict population responses to select stressors known to threaten gray seals and other marine mammals around the world. We explore variations of three ecologically important stressors using phenomenological simulations: food limitation, endocrine disrupting chemicals that reduce fertility, and infectious disease. Using our calibrated DEB-IBM for Baltic gray seals, we found that continuous incremental food limitation can be more detrimental to population size than short random events of starvation, and further, that the effect of endocrine disruptors on population growth and structure is delayed due to bioaccumulation, and that communicable diseases significantly decrease population growth even when spillover events are relatively less frequent. One important finding is the delayed effect on population growth rate from some stressors, several years after the exposure period, resulting from a decline in somatic growth, increased age at maturation and decreased fecundity. Such delayed responses are ignored in current models of population viability and can be important in the correct assessment of population extinction risks. The model presented here provides a test bed on which effects of new hazardous substances and different scenarios of future environmental change affecting food availability and/or seal energetic demands can be investigated. Thus, the framework provides a tool for better understanding how diverse environmental stressors affect marine mammal populations and can be used to guide scientifically based management.
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| 5. |
- Sonne, Christian, et al.
(författare)
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A review of pathogens in selected Baltic Sea indicator species
- 2020
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Ingår i: Environment International. - : Elsevier BV. - 0160-4120 .- 1873-6750.
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Forskningsöversikt (refereegranskat)abstract
- Here we review the state-of-the-art of pathogens in select marine and terrestrial key species of the Baltic Sea, i.e.ringed seal (Pusa hispida), harbour seal (Phoca vitulina), grey seal (Halichoerus grypus), harbour porpoise(Phocoena phocoena), common eider (Somateria mollissima), pink-footed goose (Anser brachyrhynchus) and whitetailedeagle (Haliaeetus albicilla). This review is the first to merge and present available information and baselinedata for the FP7 BONUS BaltHealth project: Baltic Sea multilevel health impacts on key species of anthropogenichazardous substances. Understanding the spread, prevalence and effects of wildlife pathogens is important for theunderstanding of animal and ecosystem health, ecosystem function and services, as well as human exposure tozoonotic diseases. This review summarises the occurrence of parasites, viruses and bacteria over the past sixdecades, including severe outbreaks of Phocine Distemper Virus (PDV), the seroprevalence of Influenza A andthe recent increase in seal parasites. We show that Baltic high trophic key species are exposed to multiplebacterial, viral and parasitic diseases. Parasites, such as C. semerme and P. truncatum present in the colon andliver Baltic grey seals, respectively, and anisakid nematodes require particular monitoring due to their effects onanimal health. In addition, distribution of existing viral and bacterial pathogens, along with the emergence andspread of new pathogens, need to be monitored in order to assess the health status of key Baltic species. Relevantbacteria are Streptococcus spp., Brucella spp., Erysipelothrix rhusiopathiae, Mycoplasma spp. and Leptospira interrogans;relevant viruses are influenza virus, distemper virus, pox virus and herpes virus. This is of special importanceas some of the occurring pathogens are zoonotic and thus also pose a potential risk for human health.Marine mammal handlers, as well as civilians that by chance encounter marine mammals, need to be aware ofthis risk. It is therefore important to continue the monitoring of diseases affecting key Baltic species in order toassess their relationship to population dynamics and their potential threat to humans. These infectious agents arevaluable indicators of host ecology and can act as bioindicators of distribution, migration, diet and behaviour ofmarine mammals and birds, as well as of climate change and changes in food web dynamics. In addition, infectiousdiseases are linked to pollutant exposure, overexploitation, immune suppression and subsequent inflammatorydisease. Ultimately, these diseases affect the health of the entire ecosystem and, consequently,ecosystem function and services. As global warming is continuously increasing, the impact of global change oninfectious disease patterns is important to monitor in Baltic key species in the future.
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