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Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging

Petrov, Dmitry (author)
Gutman, Boris A (author)
Yu, Shih-Hua Julie (author)
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van Erp, Theo G M (author)
Turner, Jessica A (author)
Schmaal, Lianne (author)
Veltman, Dick (author)
Wang, Lei (author)
Alpert, Kathryn (author)
Isaev, Dmitry (author)
Zavaliangos-Petropulu, Artemis (author)
Ching, Christopher R K (author)
Calhoun, Vince (author)
Glahn, David (author)
Satterthwaite, Theodore D (author)
Andreasen, Ole Andreas (author)
Borgwardt, Stefan (author)
Howells, Fleur (author)
Groenewold, Nynke (author)
Voineskos, Aristotle (author)
Radua, Joaquim (author)
Karolinska Institutet
Potkin, Steven G (author)
Crespo-Facorro, Benedicto (author)
Tordesillas-Gutiérrez, Diana (author)
Shen, Li (author)
Lebedeva, Irina (author)
Spalletta, Gianfranco (author)
Donohoe, Gary (author)
Kochunov, Peter (author)
Rosa, Pedro G P (author)
James, Anthony (author)
Dannlowski, Udo (author)
Baune, Bernhard T (author)
Aleman, André (author)
Gotlib, Ian H (author)
Walter, Henrik (author)
Walter, Martin (author)
Soares, Jair C (author)
Karolinska Institutet
Ehrlich, Stefan (author)
Gur, Ruben C (author)
Doan, N Trung (author)
Agartz, Ingrid (author)
Karolinska Institutet
Westlye, Lars T (author)
Harrisberger, Fabienne (author)
Riecher-Rössler, Anita (author)
Uhlmann, Anne (author)
Stein, Dan J (author)
Dickie, Erin W (author)
Pomarol-Clotet, Edith (author)
Fuentes-Claramonte, Paola (author)
Canales-Rodríguez, Erick Jorge (author)
Salvador, Raymond (author)
Huang, Alexander J (author)
Roiz-Santiañez, Roberto (author)
Cong, Shan (author)
Tomyshev, Alexander (author)
Piras, Fabrizio (author)
Vecchio, Daniela (author)
Banaj, Nerisa (author)
Ciullo, Valentina (author)
Hong, Elliot (author)
Busatto, Geraldo (author)
Zanetti, Marcus V (author)
Serpa, Mauricio H (author)
Cervenka, Simon (author)
Centre for Psychiatry Research, Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden
Kelly, Sinead (author)
Grotegerd, Dominik (author)
Sacchet, Matthew D (author)
Veer, Ilya M (author)
Li, Meng (author)
Wu, Mon-Ju (author)
Irungu, Benson (author)
Walton, Esther (author)
Thompson, Paul M (author)
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 (creator_code:org_t)
2017-09-07
2017
English.
In: Machine learning in medical imaging. MLMI (Workshop). - Cham : Springer International Publishing. ; 10541, s. 371-378
  • Journal article (peer-reviewed)
Abstract Subject headings
Close  
  • As very large studies of complex neuroimaging phenotypes become more common, human quality assessment of MRI-derived data remains one of the last major bottlenecks. Few attempts have so far been made to address this issue with machine learning. In this work, we optimize predictive models of quality for meshes representing deep brain structure shapes. We use standard vertex-wise and global shape features computed homologously across 19 cohorts and over 7500 human-rated subjects, training kernelized Support Vector Machine and Gradient Boosted Decision Trees classifiers to detect meshes of failing quality. Our models generalize across datasets and diseases, reducing human workload by 30-70%, or equivalently hundreds of human rater hours for datasets of comparable size, with recall rates approaching inter-rater reliability.

Subject headings

MEDICIN OCH HÄLSOVETENSKAP  -- Klinisk medicin -- Radiologi och bildbehandling (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Clinical Medicine -- Radiology, Nuclear Medicine and Medical Imaging (hsv//eng)

Keyword

machine learning
quality control
shape analysis

Publication and Content Type

ref (subject category)
art (subject category)

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By the author/editor
Petrov, Dmitry
Gutman, Boris A
Yu, Shih-Hua Jul ...
van Erp, Theo G ...
Turner, Jessica ...
Schmaal, Lianne
show more...
Veltman, Dick
Wang, Lei
Alpert, Kathryn
Isaev, Dmitry
Zavaliangos-Petr ...
Ching, Christoph ...
Calhoun, Vince
Glahn, David
Satterthwaite, T ...
Andreasen, Ole A ...
Borgwardt, Stefa ...
Howells, Fleur
Groenewold, Nynk ...
Voineskos, Arist ...
Radua, Joaquim
Potkin, Steven G
Crespo-Facorro, ...
Tordesillas-Guti ...
Shen, Li
Lebedeva, Irina
Spalletta, Gianf ...
Donohoe, Gary
Kochunov, Peter
Rosa, Pedro G P
James, Anthony
Dannlowski, Udo
Baune, Bernhard ...
Aleman, André
Gotlib, Ian H
Walter, Henrik
Walter, Martin
Soares, Jair C
Ehrlich, Stefan
Gur, Ruben C
Doan, N Trung
Agartz, Ingrid
Westlye, Lars T
Harrisberger, Fa ...
Riecher-Rössler, ...
Uhlmann, Anne
Stein, Dan J
Dickie, Erin W
Pomarol-Clotet, ...
Fuentes-Claramon ...
Canales-Rodrígue ...
Salvador, Raymon ...
Huang, Alexander ...
Roiz-Santiañez, ...
Cong, Shan
Tomyshev, Alexan ...
Piras, Fabrizio
Vecchio, Daniela
Banaj, Nerisa
Ciullo, Valentin ...
Hong, Elliot
Busatto, Geraldo
Zanetti, Marcus ...
Serpa, Mauricio ...
Cervenka, Simon
Kelly, Sinead
Grotegerd, Domin ...
Sacchet, Matthew ...
Veer, Ilya M
Li, Meng
Wu, Mon-Ju
Irungu, Benson
Walton, Esther
Thompson, Paul M
show less...
About the subject
MEDICAL AND HEALTH SCIENCES
MEDICAL AND HEAL ...
and Clinical Medicin ...
and Radiology Nuclea ...
Articles in the publication
By the university
Uppsala University
Karolinska Institutet

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