| 1. |
- Caputo, Andrea, et al.
(författare)
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The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration
- 2019
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Ingår i: FEMS Microbiology Letters. - : Oxford University Press (OUP). - 0378-1097 .- 1574-6968. ; 366:2
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Tidskriftsartikel (refereegranskat)abstract
- Diatom diazotroph associations (DDAs) are a widespread marine planktonic symbiosis between several diatom genera and di-nitrogen (N2)-fixing bacteria. Combining single cell confocal microscopy observations and molecular genetic approaches on individual field collected cells, we determined the phylogenetic diversity, distribution and evolution of the DDAs. Confocal analyses coupled with 3-D imaging re-evaluated the cellular location of DDA symbionts. DDA diversity was resolved by paired gene sequencing (18S rRNA and rbcL genes, 16S rRNA and nifH genes). A survey using the newly acquired sequences against public databases found sequences with high similarity (99–100%) to either host (18S rRNA) or symbiont (16S rRNA) in atypical regions for DDAs (high latitudes, anoxic basin and copepod gut). Concatenated phylogenies were congruent for the host and cyanobacteria sequences and implied co-evolution. Time-calibrated trees dated the appearance of N2 fixing planktonic symbiosis from 100–50Mya and were consistent with the symbiont cellular location: symbioses with internal partners are more ancient. An ancestral state reconstruction traced the evolution of traits in DDAs and highlight that the adaptive radiation to the marine environment was likely facilitated by the symbiosis. Our results present the evolutionary nature of DDAs and provide new genetic and phenotypic information for these biogeochemically relevant populations.
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| 2. |
- Laeverenz Schlogelhofer, Hannah, et al.
(författare)
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Combining SIMS and mechanistic modelling to reveal nutrient kinetics in an algal-bacterial mutualism
- 2021
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 16:5
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Tidskriftsartikel (refereegranskat)abstract
- Microbial communities are of considerable significance for biogeochemical processes, for the health of both animals and plants, and for biotechnological purposes. A key feature of microbial interactions is the exchange of nutrients between cells. Isotope labelling followed by analysis with secondary ion mass spectrometry (SIMS) can identify nutrient fluxes and heterogeneity of substrate utilisation on a single cell level. Here we present a novel approach that combines SIMS experiments with mechanistic modelling to reveal otherwise inaccessible nutrient kinetics. The method is applied to study the onset of a synthetic mutualistic partnership between a vitamin B-12-dependent mutant of the alga Chlamydomonas reinhardtii and the B-12-producing, heterotrophic bacterium Mesorhizobium japonicum, which is supported by algal photosynthesis. Results suggest that an initial pool of fixed carbon delays the onset of mutualistic cross-feeding; significantly, our approach allows the first quantification of this expected delay. Our method is widely applicable to other microbial systems, and will contribute to furthering a mechanistic understanding of microbial interactions.
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| 3. |
- Dussex, Nicolas, et al.
(författare)
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Population genomics of the critically endangered kākāpō
- 2021
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Ingår i: Cell Genomics. - : Elsevier BV. - 2666-979X. ; 1:1
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Tidskriftsartikel (refereegranskat)abstract
- Summary The kākāpō is a flightless parrot endemic to New Zealand. Once common in the archipelago, only 201 individuals remain today, most of them descending from an isolated island population. We report the first genome-wide analyses of the species, including a high-quality genome assembly for kākāpō, one of the first chromosome-level reference genomes sequenced by the Vertebrate Genomes Project (VGP). We also sequenced and analyzed 35 modern genomes from the sole surviving island population and 14 genomes from the extinct mainland population. While theory suggests that such a small population is likely to have accumulated deleterious mutations through genetic drift, our analyses on the impact of the long-term small population size in kākāpō indicate that present-day island kākāpō have a reduced number of harmful mutations compared to mainland individuals. We hypothesize that this reduced mutational load is due to the island population having been subjected to a combination of genetic drift and purging of deleterious mutations, through increased inbreeding and purifying selection, since its isolation from the mainland ∼10,000 years ago. Our results provide evidence that small populations can survive even when isolated for hundreds of generations. This work provides key insights into kākāpō breeding and recovery and more generally into the application of genetic tools in conservation efforts for endangered species.
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| 4. |
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| 5. |
- Peyrot, Daniel, et al.
(författare)
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The greening of Western Australian landscapes: the Phanerozoic plant record
- 2019
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Ingår i: Journal of the Royal Society of Western Australia. - Perth : Royal Society of Western Australia. - 0035-922X. ; 102, s. 52-82
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Tidskriftsartikel (refereegranskat)abstract
- Western Australian terrestrial floras first appeared in the Middle Ordovician (c. 460 Ma) and developed Gondwanan affinities in the Permian. During the Mesozoic, these floras transitioned to acquire a distinctly austral character in response to further changes in the continent’s palaeolatitude and its increasing isolation from other parts of Gondwana. This synthesis of landscape evolution is based on palaeobotanical and palynological evidence mostly assembled during the last 60 years. The composition of the plant communities and the structure of vegetation changed markedly through the Phanerozoic. The Middle Ordovician –Middle Devonian was characterised by diminutive vegetation in low-diversity communities. An increase in plant size is inferred from the Devonian record, particularly from that of the Late Devonian when a significant part of the flora was arborescent. Changes in plant growth-forms accompanied a major expansion of vegetation cover to episodically or permanently flooded lowland settings and, from the latest Mississippian onwards, to dry hinterland environments. Wetter conditions during the Permian yielded waterlogged environments with complex swamp communities dominated by Glossopteris. In response to the Permian–Triassic extinction event, a transitional vegetation characterised by herbaceous lycopsids became dominant but was largely replaced by the Middle Triassic with seed ferns and shrubs or trees attributed to Dicroidium. Another floristic turnover at the Triassic–Jurassic boundary introduced precursors of Australia’s modern vegetation and other southern hemisphere regions. Most importantly, flowering plants gained ascendancy during the Late Cretaceous. Characteristics of the state’s modern vegetation, such as sclerophylly and xeromorphy, arose during the Late Cretaceous and Paleogene. The vegetation progressively developed its present-day structure and composition in response to the increasing aridity during the Neogene–Quaternary.
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