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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Carneiro, Miguel (author)
Rubin, Carl-Johan (author)
Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
Di Palma, Federica (author)
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Albert, Frank W. (author)
Alfoeldi, Jessica (author)
Barrio, Alvaro Martinez (author)
Uppsala universitet,Science for Life Laboratory, SciLifeLab,Institutionen för medicinsk biokemi och mikrobiologi
Pielberg, Gerli (author)
Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
Rafati, Nima (author)
Uppsala universitet,Science for Life Laboratory, SciLifeLab,Institutionen för medicinsk biokemi och mikrobiologi
Sayyab, Shumaila (author)
Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics
Turner-Maier, Jason (author)
Younis, Shady (author)
Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
Afonso, Sandra (author)
Aken, Bronwen (author)
Alves, Joel M. (author)
Barrell, Daniel (author)
Bolet, Gerard (author)
Boucher, Samuel (author)
Burbano, Hernan A. (author)
Campos, Rita (author)
Chang, Jean L. (author)
Duranthon, Veronique (author)
Fontanesi, Luca (author)
Garreau, Herve (author)
Heiman, David (author)
Johnson, Jeremy (author)
Mage, Rose G. (author)
Peng, Ze (author)
Queney, Guillaume (author)
Rogel-Gaillard, Claire (author)
Ruffier, Magali (author)
Searle, Steve (author)
Villafuerte, Rafael (author)
Xiong, Anqi (author)
Uppsala universitet,Cancer och vaskulärbiologi,Science for Life Laboratory, SciLifeLab
Young, Sarah (author)
Forsberg-Nilsson, Karin (author)
Uppsala universitet,Science for Life Laboratory, SciLifeLab,Cancer och vaskulärbiologi
Good, Jeffrey M. (author)
Lander, Eric S. (author)
Ferrand, Nuno (author)
Lindblad-Toh, Kerstin (author)
Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
Andersson, Leif (author)
Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Uppsala universitet,Science for Life Laboratory, SciLifeLab,Institutionen för medicinsk biokemi och mikrobiologi,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics,Uppsala University,Texas A&M University
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 (creator_code:org_t)
 
American Association for the Advancement of Science (AAAS), 2014
2014
English.
In: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 345:6200, s. 1074-1079
Related links:
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  • Journal article (peer-reviewed)
Abstract Subject headings
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  • The genetic changes underlying the initial steps of animal domestication are still poorly understood. We generated a high-quality reference genome for the rabbit and compared it to resequencing data from populations of wild and domestic rabbits. We identified more than 100 selective sweeps specific to domestic rabbits but only a relatively small number of fixed (or nearly fixed) single-nucleotide polymorphisms (SNPs) for derived alleles. SNPs with marked allele frequency differences between wild and domestic rabbits were enriched for conserved noncoding sites. Enrichment analyses suggest that genes affecting brain and neuronal development have often been targeted during domestication. We propose that because of a truly complex genetic background, tame behavior in rabbits and other domestic animals evolved by shifts in allele frequencies at many loci, rather than by critical changes at only a few domestication loci.

Subject headings

NATURVETENSKAP  -- Biologi -- Genetik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Genetics (hsv//eng)
NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Mikrobiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Microbiology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)

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