| 1. |
- Guo, Ying, et al.
(författare)
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Mapping and Functional Dissection of the Rumpless Trait in Piao Chicken Identifies a Causal Loss of Function Mutation in the Novel Gene Rum
- 2023
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Ingår i: Molecular biology and evolution. - : Oxford University Press. - 0737-4038 .- 1537-1719. ; 40:12
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Tidskriftsartikel (refereegranskat)abstract
- Rumpless chickens exhibit an abnormality in their tail development. The genetics and biology of this trait has been studied for decades to illustrate a broad variation in both the types of inheritance and the severity in the developmental defects of the tail. In this study, we created a backcross pedigree by intercrossing Piao (rumpless) with Xianju (normal) to investigate the genetic mechanisms and molecular basis of the rumpless trait in Piao chicken. Through genome-wide association and linkage analyses, the candidate region was fine-mapped to 798.5 kb (chromosome 2: 86.9 to 87.7 Mb). Whole-genome sequencing analyses identified a single variant, a 4.2 kb deletion, which was completely associated with the rumpless phenotype. Explorations of the expression data identified a novel causative gene, Rum, that produced a long, intronless transcript across the deletion. The expression of Rum is embryo-specific, and it regulates the expression of MSGN1, a key factor in regulating T-box transcription factors required for mesoderm formation and differentiation. These results provide genetic and molecular experimental evidence for a novel mechanism regulating tail development in chicken and report the likely causal mutation for the tail abnormity in the Piao chicken. The novel regulatory gene, Rum, will, due to its role in fundamental embryo development, be of interest for further explorations of a potential role in tail and skeletal development also in other vertebrates.
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| 2. |
- Hu, Yuning, et al.
(författare)
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Cooking methods affect the intake of per- and polyfluoroalkyl substances (PFASs) from grass carp
- 2020
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Ingår i: Ecotoxicology and Environmental Safety. - : Academia Press. - 0147-6513 .- 1090-2414. ; 203
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Tidskriftsartikel (refereegranskat)abstract
- Consumption of fish is one of the predominant sources of human exposure to per- and polyfluoroalkyl substances (PFASs). In this study, the effect of various cooking methods (boiling, steaming, grilling and frying) on the levels of PFASs in fish muscle and the intake of PFASs was explored by using grass carp collected from Tangxun Lake, Wuhan, China. Perfluorooctane sulfonate (PFOS) was the predominant PFASs in raw fish fillets, with the concentrations ranging from 59.6 to 136 ng/g ww, followed by perfluorobutane sulfonate (PFBS) (7.73-51.9 ng/g ww). The concentrations of long-chain PFASs in fish increased after cooking, while those of short-chain PFASs decreased. The amounts of PFASs in the cooked fish fillets decreased except PFOS. Short-chain PFASs, including PFBS and perfluoroheptanoic acid (PFHpA), were dominant in cooking juice. The highest amounts of PFBS in the juices were observed after boiling and frying, even higher than those in cooked fish fillets, suggesting that the release of short-chain PFASs to the cooking juices could not be neglected. Based on these results, the intake of short-chain PFASs amount through cooked fish fillets slightly decreased, but the intake of PFOS amount increased. However, consumption of cooking juice (fish soup) could increase the exposure risk of PFBS. Comprehensively considering the increase of PFOS and decrease of total PFASs, boiling may be the relatively better method to cook fish. As PFASs are ubiquitous and inevitable in aquatic food, it is thus important to choose appropriate cooking processes and dietary habits for reducing the intake of different PFASs from fish.
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| 3. |
- Hu, Yifan, et al.
(författare)
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Reconstructing long-term global satellite-based soil moisture data using deep learning method
- 2023
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Ingår i: Frontiers in Earth Science. - : Frontiers Media SA. - 2296-6463. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- Soil moisture is an essential component for the planetary balance between land surface water and energy. Obtaining long-term global soil moisture data is important for understanding the water cycle changes in the warming climate. To date several satellite soil moisture products are being developed with varying retrieval algorithms, however with considerable missing values. To resolve the data gaps, here we have constructed two global satellite soil moisture products, i.e., the CCI (Climate Change Initiative soil moisture, 1989–2021; CCIori hereafter) and the CM (Correlation Merging soil moisture, 2006–2019; CMori hereafter) products separately using a Convolutional Neural Network (CNN) with autoencoding approach, which considers soil moisture variability in both time and space. The reconstructed datasets, namely CCIrec and CMrec, are cross-evaluated with artificial missing values, and further againt in-situ observations from 12 networks including 485 stations globally, with multiple error metrics of correlation coefficients (R), bias, root mean square errors (RMSE) and unbiased root mean square error (ubRMSE) respectively. The cross-validation results show that the reconstructed missing values have high R (0.987 and 0.974, respectively) and low RMSE (0.015 and 0.032 m3/m3, respectively) with the original ones. The in-situ validation shows that the global mean R between CCIrec (CCIori) and in-situ observations is 0.590 (0.581), RMSE is 0.093 (0.093) m3/m3, ubRMSE is 0.059 (0.058) m3/m3, bias is 0.032 (0.037) m3/m3 respectively; CMrec (CMori) shows quite similar results. The added value of this study is to provide long-term gap-free satellite soil moisture products globally, which helps studies in the fields of hydrology, meteorology, ecology and climate sciences.
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| 4. |
- Kumar, RM Saravana, et al.
(författare)
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Auxin enhances grafting success in Carya cathayensis (Chinese hickory)
- 2018
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Ingår i: Planta. - : Springer. - 0032-0935 .- 1432-2048. ; 247:3, s. 761-772
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Tidskriftsartikel (refereegranskat)abstract
- Main conclusionApplication of auxin to root stock and scion increases the success rate of grafting in Chinese hickory.The nuts of the Chinese hickory (Carya cathayensis) tree are considered both delicious and healthy. The popularity and high demand result is that the hickory nuts are of very high economical value for horticulture. This is particularly true for the Zhejiang province in eastern China where this tree is widely cultivated. However, there are several difficulties surrounding the hickory cultivation, such as for example long vegetative growth, tall trees, labour-intensive nut picking, and slow variety improvements. These complications form a great bottleneck in the expansion of the hickory industry. The development of an efficient grafting procedure could surpass at least some of these problems. In this study, we demonstrate that application of the auxin indole-3-acetic acid promotes the grafting process in hickory, whereas application of the auxin transport inhibitor 1-N-naphthylphthalamic acid inhibits the grafting process. Furthermore, we have identified hickory genes in the PIN, ABCB, and AUX/LAX-families known to encode influx and efflux carriers in the polar transport of auxin. We show that increased expression of several of these genes, such as CcPIN1b and CcLAX3, is correlating with successful grafting.
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| 5. |
- Li, Xiaojuan, et al.
(författare)
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Climate and soil properties drive soil organic and inorganic carbon patterns across a latitudinal gradient in southwestern China
- 2023
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Ingår i: Journal of Soils and Sediments. - : Springer Science and Business Media LLC. - 1614-7480 .- 1439-0108. ; 23:1, s. 91-102
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Tidskriftsartikel (refereegranskat)abstract
- PurposeDrylands account for 47.2% of land area and contain 15.5% of global carbon (C). However, the variation in organic and inorganic C stocks across latitudinal gradients in arid and semiarid shrubland ecosystems remains understudied, and we lack in-depth understanding of the main drivers of C variation at this spatial scale.MethodsHere, we sampled soils from 95 sites across a latitudinal gradient to explore both the latitudinal patterns and potential drivers of soil organic carbon density (SOCD) and soil inorganic carbon density (SICD). We also assessed variation in SOCD and SICD down the soil profile, by sampling soils at four depths (0 – 10 cm, 10 – 20 cm, 20 – 30 cm, and 30 – 50 cm).ResultBoth SOCD and SICD exhibited a binomial relationship with latitude (P < 0.01). Soil properties accounted for the greatest variation in SOCD, with the most important explanatory factor being exchangeable calcium, followed by mean annual temperature, pH, plant diversity, and silt content. Soil pH and plant diversity were more important in explaining variation in SOCD in the subsoil (> 20 cm depth) than the topsoil. For SICD, soil properties explained the greatest variation at all depths. Soil pH explained the most variance in SICD, followed by exchangeable calcium and mean annual temperature in the topsoil (i.e., 0 – 10 cm and 10 – 20 cm). In the subsoil (i.e., 20 – 30 cm and 30 – 50 cm), exchangeable calcium was the most important predictor, followed by soil organic carbon, mean annual temperature, and pH.ConclusionOur study shows that soil properties are a strong predictor of latitudinal patterns of soil organic and inorganic C in arid and semiarid shrubland ecosystems. We also identified differences in potential drivers of SOCD and SICD with depth, advancing our understanding of large-scale patterns of C storage in arid and semiarid soils.
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| 6. |
- Li, Xiaojuan, et al.
(författare)
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Latitudinal patterns of light and heavy organic matter fractions in arid and semi-arid soils
- 2022
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Ingår i: Catena. - : Elsevier BV. - 0341-8162. ; 215
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Tidskriftsartikel (refereegranskat)abstract
- Semi-arid and arid ecosystems are important for the global C cycle. Despite this, it remains unclear how organic matter fractions vary across latitudinal gradients, and what drives this variation, in dry ecosystems. In this study, we sampled soils from 100 sites across a latitudinal gradient in the dry valleys of southwestern China to explore the latitudinal patterns of light fraction organic matter (LFOM) and heavy fraction organic matter (HFOM) at two soil depths (0–10 cm and 10–20 cm). Across the studied gradient, HFOM accounted for a larger fraction of soil organic matter than LFOM. LFOM increased exponentially with increasing latitude at both 0–10 cm and 10–20 cm depths. Heavy fraction organic C increased linearly with increasing latitude at both depths, while heavy fraction organic N only increased with latitude in soils from 10 to 20 cm depth. Latitudinal patterns of LFOM were mainly explained by climate, with the most important driver being mean annual temperature, followed by mean annual precipitation. Soil physicochemical factors – in particular cation exchange capacity and silt content – explained the most variation in HFOM. Total microbial biomass was also important in explaining variation in HFOM, especially in the 10–20 cm soil layer. Overall, our results shed light on the spatial distribution of organic matter fractions in arid and semi-arid regions. We also identify candidate drivers of the variation in LFOM and HFOM in arid and semi-arid regions, finding that climate primarily explains variation in LFOM while soil physiochemistry primarily explains variation in HFOM.
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| 7. |
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| 8. |
- Wu, Tonghua, et al.
(författare)
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Storage, patterns, and environmental controls of soil organic carbon stocks in the permafrost regions of the Northern Hemisphere
- 2022
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Ingår i: Science of the Total Environment. - : Elsevier BV. - 0048-9697. ; 828
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Tidskriftsartikel (refereegranskat)abstract
- Large stocks of soil organic carbon (SOC) accumulated in the Northern Hemisphere permafrost regions may be vulnerable to climatic warming, but global estimates of SOC distribution and magnitude in permafrost regions still have large uncertainties. Based on multiple high-resolution environmental variables and a compiled soil sample dataset (>3000 soil profiles), we used machine-learning methods to estimate the size and spatial distribution of SOC for the top 3 m soils in the Northern Hemisphere permafrost regions. We also identified key environmental predictors of SOC. The results showed that the SOC storage for the top 3 m soil was 1079 ± 174 Pg C across the Northern Hemisphere permafrost regions (20.8 × 106 km2), including 1057 ± 167 Pg C in the northern permafrost regions and 22 ± 7 Pg C in the Third Pole permafrost regions. The mean annual air temperature and NDVI are the main controlling factors for the spatial distribution of SOC stocks in the northern and the Third Pole permafrost regions. Our estimations were more accurate than the existing global SOC stock maps. The results improve our understanding of the regional and global permafrost carbon cycle and their feedback to the climate system.
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