| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
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- 2019
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Tidskriftsartikel (refereegranskat)
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| 3. |
- Jiang, Pengfei, et al.
(författare)
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VLBI astrometry on the white dwarf pulsar AR Scorpii
- 2023
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Ingår i: Monthly Notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 520:2, s. 2942-2951
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Tidskriftsartikel (refereegranskat)abstract
- AR Scorpii (AR Sco), the only-known radio-pulsing white dwarf binary, shows unusual pulsating emission at the radio, infrared, optical, and ultraviolet bands. To determine its astrometric parameters at the radio band independently, we conducted multi-epoch Very Long Baseline Interferometry (VLBI) phase-referencing observations with the European VLBI Network at 5 GHz and the Chinese VLBI Network plus the Warkworth 30-m telescope (New Zealand) at 8.6 GHz. By using the differential VLBI astrometry, we provide high-precision astrometric measurements on the parallax (pi = 8.52(-0.07)(+0.04) mas) and proper motion (mu(alpha) = 9.48(-0.07)(+0.04) mas yr(-1), mu(delta) = -51.32(-0.38)(+0.22) mas yr (-1)). The new VLBI results agree with the optical Gaia astrometry. Our kinematic analysis reveals that the Galactic space velocities of AR Sco are quite consistent with that of both intermediate polars and polars. Combined with the previous tightest VLBI constraint on the size, our parallax distance suggests that the radio emission of AR Sco should be located within the light cylinder of its white dwarf.
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| 4. |
- Tang, Ting-Ting, et al.
(författare)
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Impaired thymic export and apoptosis contribute to regulatory T-cell defects in patients with chronic heart failure.
- 2011
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Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203 .- 1932-6203. ; 6:9, s. e24272-
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Tidskriftsartikel (refereegranskat)abstract
- Animal studies suggest that regulatory T (T(reg)) cells play a beneficial role in ventricular remodeling and our previous data have demonstrated defects of T(reg) cells in patients with chronic heart failure (CHF). However, the mechanisms behind T(reg-)cell defects remained unknown. We here sought to elucidate the mechanism of T(reg-)cell defects in CHF patients.
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| 5. |
- Ma, Tian, et al.
(författare)
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Lipid engineering combined with systematic metabolic engineering of Saccharomyces cerevisiae for high-yield production of lycopene
- 2019
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Ingår i: Metabolic Engineering. - : Elsevier BV. - 1096-7176 .- 1096-7184. ; 52, s. 134-142
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Tidskriftsartikel (refereegranskat)abstract
- Saccharomyces cerevisiae is an efficient host for natural-compound production and preferentially employed in academic studies and bioindustries. However, S. cerevisiae exhibits limited production capacity for lipophilic natural products, especially compounds that accumulate intracellularly, such as polyketides and carotenoids, with some engineered compounds displaying cytotoxicity. In this study, we used a nature-inspired strategy to establish an effective platform to improve lipid oil–triacylglycerol (TAG) metabolism and enable increased lycopene accumulation. Through systematic traditional engineering methods, we achieved relatively high-level production at 56.2 mg lycopene/g cell dry weight (cdw). To focus on TAG metabolism in order to increase lycopene accumulation, we overexpressed key genes associated with fatty acid synthesis and TAG production, followed by modulation of TAG fatty acyl composition by overexpressing a fatty acid desaturase (OLE1) and deletion of Seipin (FLD1), which regulates lipid-droplet size. Results showed that the engineered strain produced 70.5 mg lycopene/g cdw, a 25% increase relative to the original high-yield strain, with lycopene production reaching 2.37 g/L and 73.3 mg/g cdw in fed-batch fermentation and representing the highest lycopene yield in S. cerevisiae reported to date. These findings offer an effective strategy for extended systematic metabolic engineering through lipid engineering.
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| 6. |
- Qin, Ning, 1990, et al.
(författare)
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Flux regulation through glycolysis and respiration is balanced by inositol pyrophosphates in yeast
- 2023
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Ingår i: Cell. - : Elsevier BV. - 0092-8674 .- 1097-4172. ; 186:4, s. 748-763.e15
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Tidskriftsartikel (refereegranskat)abstract
- Although many prokaryotes have glycolysis alternatives, it's considered as the only energy-generating glucose catabolic pathway in eukaryotes. Here, we managed to create a hybrid-glycolysis yeast. Subsequently, we identified an inositol pyrophosphatase encoded by OCA5 that could regulate glycolysis and respiration by adjusting 5-diphosphoinositol 1,2,3,4,6-pentakisphosphate (5-InsP7) levels. 5-InsP7 levels could regulate the expression of genes involved in glycolysis and respiration, representing a global mechanism that could sense ATP levels and regulate central carbon metabolism. The hybrid-glycolysis yeast did not produce ethanol during growth under excess glucose and could produce 2.68 g/L free fatty acids, which is the highest reported production in shake flask of Saccharomyces cerevisiae. This study demonstrated the significance of hybrid-glycolysis yeast and determined Oca5 as an inositol pyrophosphatase controlling the balance between glycolysis and respiration, which may shed light on the role of inositol pyrophosphates in regulating eukaryotic metabolism.
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| 7. |
- Qin, Ning, et al.
(författare)
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Increased CO 2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast
- 2024
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Ingår i: Nature Communications. - 2041-1723 .- 2041-1723. ; 15:1
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Tidskriftsartikel (refereegranskat)abstract
- CO2 fixation plays a key role to make biobased production cost competitive. Here, we use 3-hydroxypropionic acid (3-HP) to showcase how CO2 fixation enables approaching theoretical-yield production. Using genome-scale metabolic models to calculate the production envelope, we demonstrate that the provision of bicarbonate, formed from CO2, restricts previous attempts for high yield production of 3-HP. We thus develop multiple strategies for bicarbonate uptake, including the identification of Sul1 as a potential bicarbonate transporter, domain swapping of malonyl-CoA reductase, identification of Esbp6 as a potential 3-HP exporter, and deletion of Uga1 to prevent 3-HP degradation. The combined rational engineering increases 3-HP production from 0.14 g/L to 11.25 g/L in shake flask using 20 g/L glucose, approaching the maximum theoretical yield with concurrent biomass formation. The engineered yeast forms the basis for commercialization of bio-acrylic acid, while our CO2 fixation strategies pave the way for CO2 being used as the sole carbon source.
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| 8. |
- Tang, Wei, et al.
(författare)
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17.25% high efficiency ternary solar cells with increased open-circuit voltage using a high HOMO level small molecule guest donor in a PM6:Y6 blend
- 2021
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Ingår i: Journal of Materials Chemistry A. - : Royal Society of Chemistry (RSC). - 2050-7496 .- 2050-7488. ; 9:36, s. 20493-20501
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Tidskriftsartikel (refereegranskat)abstract
- A small molecule donor TiC12 with an asymmetric thieno[3,2-c]isochromene unit is incorporated into the PM6:Y6 system as the third component for constructing ternary organic solar cells (OSCs). It was found that TiC12 played an outstanding role in improvement of open-circuit voltage (V-oc), short-circuit current (J(sc)) and fill factor (FF) for the OSCs. The effects of TiC12 on the absorption, exciton dissociation, charge extraction, bimolecular recombination and morphology of the active layer are analyzed in detail. The synergetic improvement of J(sc), V-oc and FF parameters is realized to generate an advanced power conversion efficiency (PCE) of 17.25% in the optimized PM6 : TiC12 : Y6 (0.9 : 0.1 : 1.2) ternary device. Furthermore, the V-oc is increased in proportion to the added amount of TiC12 in the ternary devices due to reduced disorder and nonradiative energy loss, although the guest donor TiC12 exhibited a higher HOMO level than PM6. This study provides an effective and innovative approach to elevate V-oc and thus PCE for ternary OSCs by introducing a guest small molecule donor with a higher HOMO level and better miscibility with the acceptor.
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| 9. |
- Xia, Yutao, 1995, et al.
(författare)
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Aerodynamic influences of typical windbreak wall types on a high-speed train under crosswinds
- 2022
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Ingår i: Journal of Wind Engineering and Industrial Aerodynamics. - : Elsevier BV. - 0167-6105. ; 231
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Tidskriftsartikel (refereegranskat)abstract
- The effect of windbreak wall types on their windproof effects on trains has been systematically investigated by comparing the flow field around a high-speed train behind three typical windbreak walls. These three typical windbreak walls are widely used along the windy railway lines in China, which include the earth embankment–type windbreak wall (EW), the road cutting–type windbreak wall (RW), and the straight reinforced concrete–type windbreak wall (SW). We compared the time-averaged crosswind-induced flows and aerodynamic performances of high-speed trains behind these three windbreak walls with the same height using numerical simulations. The results revealed that the windbreak wall geometric shape effects on the aerodynamic load coefficients varied according to the type of aerodynamic load and carriage marshalling positions but barely varied with yaw angles. The total drag coefficients of the train in the EW and RW were approximately 50–60% of that in the SW under the two smaller yaw angles and were only 30–40% for the largest yaw angle. For the absolute value of the side force and rolling moments coefficients, the maximum values for the head and middle cars both appeared in the RW, and the corresponding minimum values were obtained in the SW. The maximum and minimum values for the tail car were obtained at the SW and EW, respectively. The maximum of the rolling moment coefficient among three carriages in the SW was approximately 45–60% of that in the EW and only 30–40% of that in the RW. The time-averaged train surface pressure coefficient and flow patterns were similar between the EW and RW, which showed apparent differences from those in the SW. The SW provided a strong blocking effect on the incoming windward airflow and avoided the direct impact on the train. Compared with the RW, the uplifting effect of the EW's windward slope on the incoming flow further reduced the crosswind effect on trains. In addition, the dominating frequency characteristics of the aerodynamic loads were significantly affected by windbreak wall types. These findings provide a systematic understanding of the time-averaged aerodynamics of trains behind these three typical windbreak walls.
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