| 1. |
- Richards, Stephen, et al.
(författare)
-
The genome of the model beetle and pest Tribolium castaneum.
- 2008
-
Ingår i: Nature. - 1476-4687. ; 452:7190, s. 949-55
-
Tidskriftsartikel (refereegranskat)abstract
- Tribolium castaneum is a representative of earth’s most numerous eukaryotic order, a powerful model organism for the study of generalized insect development, and also an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved an ability to interact with a diverse chemical environment as evidenced by large expansions in odorant and gustatory receptors, as well as p450 and other detoxification enzymes. Developmental patterns in Tribolium are more representative of other arthropods than those found in Drosophila, a fact represented in gene content and function. For one, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, and some are expressed in the growth zone crucial for axial elongation in short germ development. Systemic RNAi in T. castaneum appears to use mechanisms distinct from those found in C. elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.
|
|
| 2. |
|
|
| 3. |
- McKay, James D., et al.
(författare)
-
Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes
- 2017
-
Ingår i: Nature Genetics. - : Nature Publishing Group. - 1061-4036 .- 1546-1718. ; 49:7, s. 1126-1132
-
Tidskriftsartikel (refereegranskat)abstract
- Although several lung cancer susceptibility loci have been identified, much of the heritability for lung cancer remains unexplained. Here 14,803 cases and 12,262 controls of European descent were genotyped on the OncoArray and combined with existing data for an aggregated genomewide association study (GWAS) analysis of lung cancer in 29,266 cases and 56,450 controls. We identified 18 susceptibility loci achieving genome-wide significance, including 10 new loci. The new loci highlight the striking heterogeneity in genetic susceptibility across the histological subtypes of lung cancer, with four loci associated with lung cancer overall and six loci associated with lung adenocarcinoma. Gene expression quantitative trait locus (eQTL) analysis in 1,425 normal lung tissue samples highlights RNASET2, SECISBP2L and NRG1 as candidate genes. Other loci include genes such as a cholinergic nicotinic receptor, CHRNA2, and the telomere-related genes OFBC1 and RTEL1. Further exploration of the target genes will continue to provide new insights into the etiology of lung cancer.
|
|
| 4. |
- Hess, Timo, et al.
(författare)
-
Dissecting the genetic heterogeneity of gastric cancer
- 2023
-
Ingår i: EBioMedicine. - : Elsevier. - 2352-3964. ; 92
-
Tidskriftsartikel (refereegranskat)abstract
- Background: Gastric cancer (GC) is clinically heterogenous according to location (cardia/non-cardia) and histopathology (diffuse/intestinal). We aimed to characterize the genetic risk architecture of GC according to its subtypes. Another aim was to examine whether cardia GC and oesophageal adenocarcinoma (OAC) and its precursor lesion Barrett's oesophagus (BO), which are all located at the gastro-oesophageal junction (GOJ), share polygenic risk architecture.Methods: We did a meta-analysis of ten European genome-wide association studies (GWAS) of GC and its subtypes. All patients had a histopathologically confirmed diagnosis of gastric adenocarcinoma. For the identification of risk genes among GWAS loci we did a transcriptome-wide association study (TWAS) and expression quantitative trait locus (eQTL) study from gastric corpus and antrum mucosa. To test whether cardia GC and OAC/BO share genetic aetiology we also used a European GWAS sample with OAC/BO.Findings: Our GWAS consisting of 5816 patients and 10,999 controls highlights the genetic heterogeneity of GC according to its subtypes. We newly identified two and replicated five GC risk loci, all of them with subtype-specific association. The gastric transcriptome data consisting of 361 corpus and 342 antrum mucosa samples revealed that an upregulated expression of MUC1, ANKRD50, PTGER4, and PSCA are plausible GC-pathomechanisms at four GWAS loci. At another risk locus, we found that the blood-group 0 exerts protective effects for non-cardia and diffuse GC, while blood-group A increases risk for both GC subtypes. Furthermore, our GWAS on cardia GC and OAC/BO (10,279 patients, 16,527 controls) showed that both cancer entities share genetic aetiology at the polygenic level and identified two new risk loci on the single-marker level.Interpretation: Our findings show that the pathophysiology of GC is genetically heterogenous according to location and histopathology. Moreover, our findings point to common molecular mechanisms underlying cardia GC and OAC/BO.
|
|
| 5. |
- Zhang, Wen, et al.
(författare)
-
Removal of micropollutants and nutrients in household wastewater using organic and inorganic sorbents
- 2018
-
Ingår i: Desalination and Water Treatment. - : Desalination Publications. - 1944-3994 .- 1944-3986. ; 120, s. 88-108
-
Tidskriftsartikel (refereegranskat)abstract
- The efficiency of five organic and five inorganic sorbents in removing 19 organic micropollutants (MPs), phosphorus, nitrogen, and dissolved organic carbon (DOC) was tested in a two-week column experiment using household wastewater spiked with pharmaceuticals (n = 6), biocides/pesticides (n = 4), organophosphates (n = 3), a fragrance, a UV-stablizer, a food additive, a rubber additive, a plasticizer and a surfactant. Two types of granular activated carbon (GAC), two types of lignite, a pine bark product, and five mineral-based sorbents were tested. All the organic sorbents except pine bark achieved better removal efficiencies of DOC (on average, 70 +/- 27%) and MPs (93 +/- 11%) than the inorganic materials (DOC: 44 +/- 7% and MPs: 66 +/- 38%). However, the organic sorbents (i.e. GAC and xyloid lignite) removed less phosphorus (46 +/- 18%), while sorbents with a high calcium or iron content (i.e. Polonite (R) and lignite) generally removed phosphorus more efficiently (93 +/- 3%). Ammonium- nitrogen was well removed by sorbents with a pH between 7 and 9, with an average removal of 87%, whereas lignite (pH 4) showed the lowest removal efficiency (50%). Some MPs were well removed by all sorbents (>= 97%) including biocides (hexachlorobenzene, triclosan and terbutryn), organophosphates (tributylphosphate, tris-(1,3-dichloro-2-propyl) phosphate and triphenylphosphate) and one fragrance (galaxolide). The pesticide 2,6-dichlorobenzamide and the pharmaceutical diclofenac were poorly removed by the pine bark and inorganic sorbents (on average, 4%), while organic sorbents achieved high removal of these chemicals (87%).
|
|
