| 1. |
- Imanishi, T., et al.
(författare)
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Integrative annotation of 21,037 human genes validated by full-length cDNA clones
- 2004
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Ingår i: PLoS biology. - : Public Library of Science (PLoS). - 1544-9173 .- 1545-7885. ; 2:6, s. 856-875
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Tidskriftsartikel (refereegranskat)abstract
- The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited. Several lines of investigation have been used to elucidate the structure and function of the genes in the human genome. Even so, gene prediction remains a difficult task, as the varieties of transcripts of a gene may vary to a great extent. We thus performed an exhaustive integrative characterization of 41,118 full-length cDNAs that capture the gene transcripts as complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level. Our international collaboration has validated 21,037 human gene candidates by analysis of high-quality full-length cDNA clones through curation using unified criteria. This led to the identification of 5,155 new gene candidates. It also manifested the most reliable way to control the quality of the cDNA clones. We have developed a human gene database, called the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/). It provides the following: integrative annotation of human genes, description of gene structures, details of novel alternative splicing isoforms, non-protein-coding RNAs, functional domains, subcellular localizations, metabolic pathways, predictions of protein three-dimensional structure, mapping of known single nucleotide polymorphisms (SNPs), identification of polymorphic microsatellite repeats within human genes, and comparative results with mouse full-length cDNAs. The H-InvDB analysis has shown that up to 4% of the human genome sequence (National Center for Biotechnology Information build 34 assembly) may contain misassembled or missing regions. We found that 6.5% of the human gene candidates (1,377 loci) did not have a good protein-coding open reading frame, of which 296 loci are strong candidates for non-protein-coding RNA genes. In addition, among 72,027 uniquely mapped SNPs and insertions/deletions localized within human genes, 13,215 nonsynonymous SNPs, 315 nonsense SNPs, and 452 indels occurred in coding regions. Together with 25 polymorphic microsatellite repeats present in coding regions, they may alter protein structure, causing phenotypic effects or resulting in disease. The H-InvDB platform represents a substantial contribution to resources needed for the exploration of human biology and pathology.
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| 2. |
- Titarenko, Yu E., et al.
(författare)
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Measurement and simulation of the cross sections for nuclide production in Fe-56 and Cr-nat targets irradiated with 0.04- to 2.6-GeV protons
- 2011
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Ingår i: Physics of Atomic Nuclei. - 1063-7788 .- 1562-692X. ; 74:4, s. 523-536
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Tidskriftsartikel (refereegranskat)abstract
- The cross sections for nuclide production in thin Fe-56 and Cr-nat targets irradiated by 0.04-2.6-GeV protons are measured by direct gamma spectrometry using two gamma spectrometers with the resolutions of 1.8 and 1.7 keV for the Co-60 1332-keV gamma line. As a result, 649 yields of radioactive residual product nuclei have been obtained. The Al-27(p, x)Na-22 reaction has been used as a monitor reaction. The experimental data are compared with the MCNPX (BERTINI, ISABEL), CEM03.02, INCL4.2, INCL4.5, PHITS, and CASCADE07 calculations.
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| 3. |
- Titarenko, Yu E., et al.
(författare)
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Measurement and simulation of the cross sections for nuclide production in Nb-93 and Ni-nat targets irradiated with 0.04- to 2.6-GeV protons
- 2011
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Ingår i: Physics of Atomic Nuclei. - 1063-7788 .- 1562-692X. ; 74:4, s. 537-550
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Tidskriftsartikel (refereegranskat)abstract
- The cross sections for nuclide production in thin Nb-93 and Ni-nat targets irradiated by 0.04- to 2.6-GeV protons have been measured by direct gamma spectrometry using two gamma spectrometers with the resolutions of 1.8 and 1.7 keV in the Co-60 1332-keV gamma line. As a result, 1112 yields of radioactive residual nuclei have been obtained. The Al-27(p, x)Na-22 reaction has been used as a monitor reaction. The experimental data have been compared with the MCNPX (BERTINI, ISABEL), CEM03.02, INCL4.2, INCL4.5, PHITS, and CASCADE07 calculations.
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| 4. |
- Titarenko, Yu E., et al.
(författare)
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Measurement and simulation of the cross sections for nuclide production in W-nat and Ta-181 targets irradiated with 0.04- to 2.6-GeV protons
- 2011
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Ingår i: Physics of Atomic Nuclei. - 1063-7788 .- 1562-692X. ; 74:4, s. 551-572
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Tidskriftsartikel (refereegranskat)abstract
- The cross sections for nuclide production in thin (nat)Wand Ta-181 targets irradiated by 0.04-2.6-GeV protons have been measured by direct gamma spectrometry using two gamma spectrometers with the resolutions of 1.8 and 1.7 keV in the Co-60 1332-keV gamma line. As a result, 1895 yields of radioactive residual product nuclei have been obtained. The Al-27(p, x)Na-22 reaction has been used as a monitor reaction. The experimental data have been compared with the MCNPX (BERTINI, ISABEL), CEM03.02, INCL4.2, INCL4.5, PHITS, and CASCADE07 calculations.
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| 5. |
- Titarenko, Yu E., et al.
(författare)
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Measurement and simulation of the cross sections for the production of Gd-148 in thin W-nat and Ta-181 targets irradiated with 0.4- to 2.6-GeV protons
- 2011
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Ingår i: Physics of Atomic Nuclei. - 1063-7788 .- 1562-692X. ; 74:4, s. 573-579
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Tidskriftsartikel (refereegranskat)abstract
- The cross sections for the production of Gd-148 in W-nat and Ta-181 targets irradiated by 0.4-, 0.6-, 0.8-, 1.2-, 1.6-, and 2.6-GeV protons at the ITEP accelerator complex have been measured by direct alpha spectrometry without chemical separation. The experimental data have been compared with the data obtained at other laboratories and with the theoretical simulations of the yields on the basis of the BERTINI, ISABEL, CEM03.02, INCL4.2, INCL4.5, CASCADE07, and PHITS codes.
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| 6. |
- Titarenko, Yu. E., et al.
(författare)
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Verification of high-energy transport codes on the basis of activation data
- 2011
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Ingår i: Physical Review C. Nuclear Physics. - 0556-2813 .- 1089-490X. ; 84:6, s. 064612-
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Tidskriftsartikel (refereegranskat)abstract
- Nuclide production cross sections measured at the Institute for Theoretical and Experimental Physics (ITEP) for the targets of (nat)Cr, (56)Fe, (nat)Ni, (93)Nb, (181)Ta, (nat)W, (nat)Pb, and (209)Bi irradiated by protons with energies from 40 to 2600 MeV were used to estimate the predictive accuracy of several popular high-energy transport codes. A general agreement of the ITEP data with the data obtained by other groups, including the numerous GSI data measured by the inverse kinematics method was found. Simulations of the measured data were performed with the MCNPX (BERTINI and ISABEL options), CEM03.02, INCL4.2 + ABLA, INCL4.5 + ABLA07, PHITS, and CASCADE.07 codes. Deviation factors between the calculated and experimental cross sections have been estimated for each target and for the whole energy range covered by our measurements. Two-dimensional diagrams of deviation factor values were produced for estimating the predictive power of every code for intermediate, not measured masses of nuclei targets and bombarding energies of protons. Further improvements of all tested here codes are recommended. In addition, new measurements at ITEP of nuclide yields from the (208)Pb target irradiated by 500-MeV protons are presented. A good agreement between these new data and the GSI measurements obtained by the inverse kinematics method was found.
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| 7. |
- Dutta, Joydeep, et al.
(författare)
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Effect of Ion Bombardment on the Properties of Hydrogenated Amorphous Silicon Prepared from Undiluted and Xenon-Diluted Silane
- 1992
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Ingår i: Japanese Journal of Applied Physics. - 0021-4922 .- 1347-4065. ; 31:3B, s. L299-L302
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Tidskriftsartikel (refereegranskat)abstract
- The contribution of ion bombardment to the growth of hydrogenated amorphous silicon prepared by plasma-enhanced chemical vapour deposition from silane and xenon-diluted silane source gases was studied by applying an external d.c. voltage to the substrate electrode. The role played by the xenon ions in the growth of the materials prepared from xenon-diluted silane source gas has been considered. It is demonstrated that the xenon ions are responsible for the growth of the materials showing stable photoconductivity behaviour under light illumination.
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