| 1. |
- Birney, Ewan, et al.
(author)
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
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Journal article (peer-reviewed)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
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| 2. |
- Carniani, S., et al.
(author)
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Constraints on high-J CO emission lines in z similar to 6 quasars
- 2019
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In: Monthly notices of the Royal Astronomical Society. - : OXFORD UNIV PRESS. - 0035-8711 .- 1365-2966. ; 489:3, s. 3939-3952
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Journal article (peer-reviewed)abstract
- We present Atacama Large Millimeter/submillimeter Array (ALMA) observations of eight highly excited CO (J(up) > 8) lines and continuum emission in two z similar to 6 quasars: SDSS J231038.88+185519.7 (hereafter J2310), for which CO(8-7), CO(9-8), and CO(17-16) lines have been observed, and ULAS J131911.29+095951.4 (J1319), observed in the CO(14-13), CO(17-16), and CO(19-18) lines. The continuum emission of both quasars arises from a compact region (<0.9 kpc). By assuming a modified blackbody law, we estimate dust masses of log(M-dust/M-circle dot) = 8.75 +/- 0.07 and log(M-dust/M-circle dot) = 8.8 +/- 0.2 and dust temperatures of T-dust = 76 +/- 3 K and T-dust = 66(-10)(+15) K, respectively, for J2310 and J1319. Only CO(8-7) and CO(9-8) in J2310 are detected, while 3 sigma upper limits on luminosities are reported for the other lines of both quasars. The CO line luminosities and upper limits measured in J2310 and J1319 are consistent with those observed in local active galactic nuclei and starburst galaxies, and other z similar to 6 quasars, except for SDSS J1148+5251 (J1148), the only quasar at z = 6.4 with a previous CO(17-16) line detection. By computing the CO spectral line energy distributions normalized to the CO(6-5) line and far-infrared luminosities for J2310, J1319, and J1148, we conclude that different gas heating mechanisms (X-ray radiation and/or shocks) may explain the different CO luminosities observed in these z similar to 6 quasar. Future J(up) > 8 CO observations will be crucial to understand the processes responsible for molecular gas excitation in luminous high-z quasars.
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| 3. |
- Raffaelli, Carla, et al.
(author)
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Photonics in switching : Architectures, systems and enabling technologies
- 2008
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In: Computer Networks. - : Elsevier BV. - 1389-1286 .- 1872-7069. ; 52:10, s. 1873-1890
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Journal article (peer-reviewed)abstract
- This paper describes recent research activities and results in the area of photonic switching carried out within the Virtual Department on Switching (VDS) of the European e-Photon/ONe Network of Excellence. Contributions from outstanding European research groups in this field are collected to offer a platform for future research in optical switching. The paper contains the main topics related to network scenarios, switch architectures and experiments, with an effort to investigate synergies and challenging opportunities for collaboration and integration of research expertise in the field.
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