| 1. |
- Alvarsson, Jesper J.
(författare)
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Perspectives on wanted and unwanted sounds in outdoor environments : Studies of masking, stress recovery, and speech intelligibility
- 2013
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- An acoustic environment contains sounds from various sound sources, some generally perceived as wanted, others as unwanted. This thesis examines the effects of wanted and unwanted sounds in acoustic environments, with regard to masking, stress recovery, and speech intelligibility.In urban settings, masking of unwanted sounds by sounds from water structures has been suggested as a way to improve the acoustic environment. However, Study I showed that the unwanted (road traffic) sound was better at masking the wanted (water) sound than vice versa, thus indicating that masking of unwanted sounds with sounds from water structures may prove difficult. Also, predictions by a partial loudness model of the auditory periphery overestimated the effect of masking, indicating that centrally located informational masking processes contribute to the effect. Some environments have also been shown to impair stress recovery; however studies using only auditory stimuli is lacking. Study II showed that a wanted (nature) sound improve stress recovery compared to unwanted (road traffic, ambient) sounds. This suggests that the acoustic environment influences stress recovery and that wanted sounds may facilitate stress recovery compared to unwanted sounds. An additional effect of unwanted sounds is impeded speech communication, commonly measured with speech intelligibility models. Study III showed that speech intelligibility starts to be negatively affected when the unwanted (aircraft sound) masker have equal or higher sound pressure level as the speech sound. Three models of speech intelligibility (speech intelligibility index, partial loudness and signal–to–noise ratio) predicted this effect well, with a slight disadvantage for the signal–to–noise ratio model. Together, Study I and III suggests that the partial loudness model is useful for determining effects of wanted and unwanted sounds in outdoor acoustic environments where variations in sound pressure level are large. But, in environments with large variations in other sound characteristics, models containing predictions of central processes would likely produce better results.The thesis concludes that wanted and unwanted characteristics of sounds in acoustic environments affect masking, stress recovery, and speech intelligibility, and that auditory perception models can predict these effects.
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| 2. |
- Andéhn, Mikael, 1982-
(författare)
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Place-of-Origin Effects on Brand Equity : Explicating the evaluative pertinence of product categories and association strength
- 2013
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The country-of-origin effect - the alteration of judgment derived from an association to a place, is a much studied phenomenon with great potential implications for brand management and international marketing. However, in light of criticism towards the lack of conceptual development the extant literature, the relevance of the effect has been brought into question.Through an exploration of the psychology of the association between brands and places, the country-of-origin effect is reimagined focusing on the role of association strength as well as how the interplay between place and product categories can shape consumer attitudes.The results of a series of psychometric tests suggest that association strength and the interplay between place and product category constitute antecedent conditions that are crucial for determining if a country-of-origin effect will occur. These findings, and their implications for future research as well as for practice, suggest that a reevaluation of the country-of-origin effect with a widening of the scope to encompass the commercial relevance of place writ large is warranted.
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| 3. |
- Ardabili, Sahar, 1982-
(författare)
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Microfluidic bases sample preparation for blood stream infections
- 2014
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Microfluidics promises to re-shape the current health-care system by transferring diagnostic tools from central laboratories to close vicinity of the patient (point-of-care). One of the most important operational steps in any diagnostic platform is sample preparation, which is the main subject in this thesis. The goal of sample preparation is to isolate targets of interest from their surroundings. The work in this thesis is based on three ways to isolate bacteria: immune-based isolation, selective cell lysis, size-based separation.The first sample-preparation approach uses antibodies against lipopolysaccharides (LPS), which are surface molecules found on all gram-negative bacteria. There are two characteristics that make this surface molecule interesting. First, it is highly abundant: one bacterium has approximately a million LPS molecules on its cell-wall. Second, the molecule has a conserved region within all gram-negative bacteria, so using one affinity molecule to isolate disease-causing gram-negative bacteria is an attractive option, particularly from the point of view of sample preparation. The main challenge, however, is antigen accessibility. To address this, we have developed a treatment protocol that improves the capturing efficiency.The strategy behind selective cell lysis takes advantage of the differences between the blood-cell membrane and the bacterial cell-wall. These fundamental differences make it possible to lyse (destroy) blood-cells selectively while keeping the target of interest, here the bacteria, intact and, what is more important alive. Viability plays an important role in determining antibiotic susceptibility.Difference in size is another well-used characteristic for sample- separation. Inertial microfluidics can focus size-dependent particle at high flow-rates. Thus, particles of 10 µm diameter were positioned in precise streamlines within a curved channel. The focused particles can then be collected at defined outlets. This approach was then used to isolate white blood cells, which account for approximately 1% of the whole blood. In such a device particles of 2µm diameter (size of bacteria) would not be focused and thereby present at every outlet. To separate bacteria from blood elasto-inertial microfluidics was used. Here, e blood components are diverted to center of the channels while smaller bacteria remain in the side streams and can subsequently be separated.
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| 4. |
- Axelsson, Östen, 1971-
(författare)
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Aesthetic Appreciation Explicated
- 2011
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The present doctoral thesis outlines a new model in psychological aesthetics, named the Information-Load Model. This model asserts that aesthetic appreciation is grounded in the relationship between the amount of information of stimuli and people’s capacity to process this information. This relationship results in information load, which in turn creates emotional responses to stimuli. Aesthetic appreciation corresponds to an optimal degree of information load. Initially, the optimal degree is relatively low. As an individual learns to master information in a domain (e.g., photography), the degree of information load, which corresponds to aesthetic appreciation, increases. The present doctoral thesis is based on three empirical papers that explored what factors determine aesthetic appreciation of photographs and soundscapes. Experiment 1 of Paper I involved 34 psychology undergraduates and 564 photographs of various motifs. It resulted in a set of 189 adjectives related to the degree of aesthetic appreciation of photographs. The subsequent experiments employed attribute scales that were derived from this set of adjectives. In Experiment 2 of Paper I, 100 university students scaled 50 photographs on 141 attribute scales. Similarly, in Paper II, 100 university students scaled 50 soundscapes on 116 attribute scales. In Paper III, 10 psychology undergraduates and 5 photo professionals scaled 32 photographs on 27 attribute scales. To explore the underlying structure of the data sets, they were subjected to Multidimensional Scaling and Principal Components Analyses. Four general components, related to aesthetic appreciation, were found: Familiarity, Hedonic Tone, Expressiveness, and Uncertainty. These components result from the higher-order latent factor Information Load that underlies aesthetic appreciation.
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| 5. |
- Cornell Kärnekull, Stina, 1985-
(författare)
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Auditory and Olfactory Abilities in Blind and Sighted Individuals : More Similarities than Differences
- 2018
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Blind individuals face various challenges in everyday life because of the lack of visual input. However, since they need to rely on the non-visual senses for everyday tasks, for instance, when navigating the environment, the question has been raised as to whether perceptual and cognitive abilities in these senses may be enhanced. This question has mainly been addressed for auditory and tactile abilities, whereas there is considerably less research into the chemical senses, such as olfaction. However, to determine whether blindness has general effects, different senses and types of tasks should be studied, preferably in one and the same study. Therefore, throughout this thesis, analogous auditory and olfactory tasks that varied in cognitive complexity were studied. In Study I, absolute thresholds, discrimination, identification, episodic recognition (i.e., after a short retention interval), metacognition, and self-reported imagery ability were assessed in early blind, late blind, and sighted participants. The only objective measure on which the blind and sighted clearly differed was the auditory episodic recognition task. The fact that early blind but not late blind participants displayed better memory than the sighted suggested that the onset age of blindness may be important for whether this ability becomes enhanced following blindness. Furthermore, the early blind participants rated their auditory imagery ability higher than the sighted, whereas both early and late blind participants rated their olfactory imagery ability higher than the sighted. In Study II, the participants from Study I were followed up after more than a year and retested on auditory and olfactory episodic recognition and identification. This time, the early blind displayed no advantage over the sighted, suggesting that the influence of blindness on auditory memory may be modulated by the length of the retention interval. Moreover, in line with Study I, identification of sounds and odors was similar in the three groups. In Study III, early blind and sighted participants were examined for potential differences in autobiographical memory as evoked by sounds and odors, respectively. Blindness did not influence the reminiscence bumps (i.e., memory peaks in certain age intervals) or have any clear impact on the number of retrieved sound- or odor-evoked memories. Taken together, the present findings indicate that blindness has no general influence across tasks or sensory modalities. Rather, specific auditory abilities, such as episodic memory, may be enhanced in blind individuals, although such effects may depend on both the onset age of blindness and the length of the retention interval. In conclusion, for most perceptual and cognitive abilities examined, performance seemed unaffected by blindness.
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| 6. |
- Eklund, Rasmus, 1989-
(författare)
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Electrophysiological correlates of consciousness
- 2019
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- How does the brain enable us to experience seeing or hearing a stimulus? If a stimulus is repeatedly presented at the awareness threshold, subjects will report that they are aware of the stimulus on half of the presentations. Electroencephalography (EEG) can be used to non-invasively record neural activity as event-related potentials (ERPs). The contrastive analysis of neural activity to trials rated as aware minus neural activity to trials rated as unaware reveals the neural correlates of consciousness (NCC). Research on the NCC in vision has resulted in two ERPs: an early negative difference wave (visual awareness negativity, VAN) and a subsequent late positivity (LP). Visual awareness may be reflected by one or both of these ERPs. However, the contrastive analysis (aware minus unaware) may not isolate the NCC because it arguably compares aware processing with a combination of unaware processing and no processing. In support, previous research that tried to isolate a comparison between aware processing and unaware processing found that LP was the only NCC. However, subsequent replications suggested VAN and LP as NCC. Because of these mixed results, we followed up on these studies in Study I with a preregistered design that manipulated stimulus size. Results showed VAN and LP as NCC. The findings provide evidence for VAN as an early NCC.Another main goal of this thesis was to investigate auditory awareness. In Study II, an auditory threshold task was used, and the contrastive analysis revealed an early negative difference wave (auditory awareness negativity, AAN) and LP. These ERPs are comparable to VAN and LP in vision. Because post-perceptual processes related to responding may confound the NCC in contrastive analysis, no-response tasks can be used to isolate awareness-related activity. In vision, a previous study in which the manual response requirement was manipulated showed effects on LP but not on VAN. In Study III, we used a similar task with auditory stimuli at the awareness threshold. Results suggested that AAN and LP are unaffected by the response manipulation. However, the present no-response task may not be optimal for removing post-perceptual processing because subjects need to reflect on their experience even if they do not need to respond manually. Additional analyses that attempted source localization of the AAN suggested that it is generated in auditory cortex.From a theoretical perspective, one view of these results is that VAN and AAN reflect local recurrent processing and that this is the neural signature of awareness, whereas LP reflects global recurrent processing that enables reporting. Other views suggest that VAN and AAN merely reflect preconscious processes, whereas LP and global recurrent processing reflect consciousness. The studies described in this thesis do not support one theory over the other but provide robust evidence for early neural correlates of visual and auditory awareness.
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| 7. |
- Grundberg, Ida, 1982-
(författare)
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Genotyping and Mutation Detection In Situ : Development and application of single-molecule techniques
- 2011
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The human body is composed of trillions of cells closely working together to maintain a functional organism. Every cell is unique in molecular composition and can acquire genetic variations that might cause it to turn pathological. It is essential to develop improved tools to better understand the development of normal and disease tissue, ideally enabling single-cell expression studies in preserved context of complex tissue with single-nucleotide resolution. This thesis presents the development and application of a new in situ method for localized detection and genotyping of individual transcripts directly in cells and tissues. The described technique utilizes padlock probes and target-primed rolling circle amplification and is highly suitable for sensitive in situ analysis. First, a new strategy for directed cleavage of single stranded DNA was investigated, e.g. nucleic acid targets with extended 3´ ends, for successful initiation of rolling circle amplification. The presented cleavage strategy is simple and applicable for subsequent enzymatic reactions, e.g. ligation and polymerization. Specific cleavage of long target overhangs was demonstrated in synthetic oligonucleotides and in genomic DNA and the detection efficiency was substantially increased. For multiplex detection and genotyping of individual transcripts in single cells, a new in situ method was developed. The technique showed a satisfactorily detection efficiency and was later applied as a general mutation analysis tool for detection of KRAS point mutations in complex tumor tissue sections, e.g. formalin-fixed, paraffin-embedded tumor tissues and cytologic tumor imprints. Mutation status was assessed in patient samples by in situ padlock probe detection and results were confirmed by DNA-sequencing. Finally, the method was adapted for simultaneous detection of individual mRNA molecules and endogenous protein modifications in single cells using padlock probes and in situ PLA. This assay will be useful for gene expression analysis and exploration of new drugs with vague effector sites. To our knowledge, no other technique exists today that offers in situ transcript detection with single-nucleotide resolution in heterogeneous tissues. The method will especially be suitable for discrimination of highly similar transcripts, e.g. splice variants, SNPs and point mutations, within gene expression studies and for cancer diagnostics.
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| 8. |
- Henriksson, Sara, 1979-
(författare)
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Application of Padlock Probe Based Nucleic Acid Analysis In Situ
- 2010
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The great variation displayed by nucleic acid molecules in human cells, and the continuous discovery of their impact on life, consequently require continuous refinements of molecular analysis techniques. Padlock probes and rolling circle amplification offer single nucleotide discrimination in situ, a high signal-to-noise ratio and localized detection within cells and tissues. In this thesis, in situ detection of nucleic acids with padlock probes and rolling circle amplification was applied for detection of DNA in the single cell gel electrophoresis assay to detect nuclear and mitochondrial DNA. This assay is used to measure DNA damage and repair. The behaviour of mitochondrial DNA in the single cell gel electrophoresis assay has earlier been controversial, but it was shown herein that mitochondrial DNA diffuses away early in the assay. In contrast, Alu repeats remain associated with the nuclear matrix throughout the procedure. A new twelve gel approach was also developed with increased throughput of the single cell gel electrophoresis assay. DNA repair of three genes OGG1, XPD and HPRT and of Alu repeats after H2O2 induced damage was further monitored. All three genes and Alu repeats were repaired faster than total DNA. Finally, padlock probes and rolling circle amplification were applied for detection of the single stranded RNA virus Crimean Congo hemorrhagic fever virus. The virus was detected by first reverse transcribing RNA into cDNA.. The virus RNA together with its complementary RNA and the nucleocapsid protein were detected in cultured cells. The work presented here enables studies of gene specific damage and repair as well as viral infections in situ. Detection by ligation offers high specificity and makes it possible to discriminate even between closely related molecules. Therefore, these techniques will be useful for a wide range of applications within research and diagnostics.
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| 9. |
- Isaksson, Magnus, 1978-
(författare)
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Extracting Genomic Variations using Selector Technology
- 2010
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- This thesis describes the development and use of a new class of molecular tools called Selector probes, and its potential for investigations of genetic variation. The Selector technology provides multiplex amplification of targeted DNA sequences with a high specificity, and an enrichment factor in the same order of magnitude as PCR. A common feature in this thesis work is to focus the analysis on DNA regions of interest. For example, this technique can be implemented in analysing candidate regions found by whole genome studies that need validation (global to local analysis), and applications requiring detection of rare alleles (common to rare allele), important in for example cancer samples. An assay is presented that allows for fast and simple quantification of relative copy-number variations. The method was proven to be able to detect aneuploidy in chromosome 13, 18, 21 and X, with a resolution enough to distinguish between 4 and 5 copies. The method was successfully applied to solve a biological question regarding a copy-number variation, that explains the Ridge phenotype typical for the dog bread Rhodesian Ridgebacks. The Selector strategy was able to detect and map a tandem duplication with a size of 133 kb, which was characterized with base-pair resolution. A readout platform that facilitates simultaneous digital quantitative analysis of a large numbers of biomolecules is further introduced. The work involves arraying amplified product from successful selection and decoding each molecule by hybridization of fluorophore labeled oligonucleotides. Finally, a genome partitioning method which is applied upstream of next generation sequencing platforms is presented. It is shown that the method provides successful enrichment with 98 % coverage and 94 % specificity and high enrichment uniformity. The technique was applied for mutation analysis of 26 cancer-related genes in tumor cell-lines and tissue.
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| 10. |
- Johansson, Henrik, 1980-
(författare)
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Microfluidic and Molecular Tools for Genetic Analyses
- 2010
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Methods that enable interrogation of multiple genomic regions in parallel are very useful for efficient detection of genetic variation. Two different types of probes are described in this thesis that can be used for direct analysis or for sample preparation upstream of Next Generation Sequencing. In addition to the development of molecular probing systems it also reports on the progress of two assay formats for biological experiments. The Selector probe enrich for genomic regions of interest by probe mediated specific circularization of target fragments. Amplification based enrichment of circles can be carried out using polymerase chain reaction, rolling-circle amplification or multiple displacement amplification. Enrichment of all exons in 28 genes known to be mutated in lung and/or colon cancer is demonstrated. Selection and analysis by SOLiD Sequencing was performed on fresh frozen and formalin fixed paraffin embedded (FFPE) samples, and mutations previously detected by Sanger sequencing were detected. The extractor probe is another probe variant that can be used for multiplex enrichment of DNA. It targets genomic fragments by using both ligation and sequence specific elongation for discrimination between on and off target sequences. A microfluidic platform fabricated by compact disc injection molding that can be used for biological assays is described. Microchannel structures in thermoplastic material are coated with silicon dioxide by electron beam evaporation which facilitates closing of the structures by PDMS- glass bonding by ozone plasma. The platform’s utility for biological experiments is demonstrated by for detection of amplified single molecules (ASM), cell culturing and on-chip peristaltic pumping. The thesis also includes an exploratory study for the purpose of using a non-optical system for detection of ASM’s. Optimizations were performed of the conditions needed in order to detect an increase in hydrodynamic size of magnetic particles, using a superconducting quantum interference device (SQUID), as they form complex with ASM’s.
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