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- Dahlin, Anna, 1979-
(författare)
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The CpG island methylator phenotype in colorectal cancer : studies on risk and prognosis
- 2011
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Background Colorectal cancer (CRC) is the second most common malignancy in developed countries. The mortality is high, with nearly half of patients dying from the disease. The primary treatment of CRC is surgery, and decisions about additional treatment with chemotherapy are based mainly on tumor stage. Novel prognostic markers that identify patients at high risk of recurrence and cancer-related death are needed. The development of CRC has been described in terms of two different pathways; the microsatellite instability (MSI) and chromosomal instability (microsatellite stable, MSS) pathway. More recently, the CpG island methylator phenotype (CIMP), characterized by frequent DNA hypermethylation, has been described as an alternative pathway of tumorigenesis. The event of DNA methylation is dependent on one-carbon metabolism, in which folate and vitamin B12 have essential functions. The purpose of this thesis was to study CIMP in CRC. The specific aims were to investigate the potential role of components of one-carbon metabolism as risk factors for this subgroup of tumors, and the prognostic importance of CIMP status, taking into consideration important confounding factors, such as MSI and tumor-infiltrating T cells. Methods CRC cases and referents included in the Northern Sweden Health and Disease Study (NSHDS, 226 cases and 437 referents) and CRC cases in the Colorectal Cancer in Umeå Study (CRUMS, n=490) were studied. Prediagnostic plasma concentrations of folate and vitamin B12 were analyzed in NSHDS. In both study groups, CIMP status was determined in archival tumor tissue by real-time quantitative PCR using an eight-gene panel (CDKN2A, MLH1, CACNA1G, NEUROG1, RUNX3, SOCS1, IGF2 and CRABP1). MSI screening status and the density of tumor-infiltrating T cells were determined by immunohistochemistry. Results An inverse association was found between plasma concentrations of vitamin B12 and rectal, but not colon, cancer risk. We also found a reduced risk of CIMP-high and CIMP-low CRC in study subjects with the lowest levels of plasma folate. We found that patients with CIMP-low tumors in both NSHDS and CRUMS had a poorer prognosis compared with CIMP-negative, regardless of MSI screening status. We also found that MSS CIMP-high patients had a poorer prognosis compared with MSS CIMP-negative. The density of tumor-infiltrating T cells and CIMP status were both found to be independent predictors of CRC patient prognosis. A particularly poor prognosis was found in patients with CIMP-low tumors poorly infiltrated by T cells. In addition, the density of T cells appeared to be more important than MSI screening status for predicting CRC patient prognosis. Conclusion Rather than being one disease, CRC is a heterogeneous set of diseases with respect to clinico-pathological and molecular characteristics. We found that the association between risk and plasma concentration of vitamin B12 and folate depends on tumor site and CIMP status, respectively. Patient prognosis was found to be different depending on CIMP and MSI screening status, and the density of tumor-infiltrating T cells.
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- DAWODY, JAZAER, 1959, et al.
(författare)
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An integrated system for energy-efficient exhaust aftertreatment for heavy-duty vehicles
- 2015
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Ingår i: Renewable Energy in the Service of Mankind. - Cham : Springer International Publishing. - 9783319177779 - 9783319177762 ; , s. 133-143
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- © Springer International Publishing Switzerland 2015. This chapter presents a unique system approach applied in a joint academic- industrial research programme, E4 Mistra, to attain the goals of high energy efficiency and low emissions in an exhaust aftertreatment system for heavy-duty vehicles. The high energy efficiency is achieved by heat recuperation, onboard hydrogen production for NOx reduction, and by finding new solutions for making the aftertreatment system active at low exhaust temperatures. To reach low particulate emissions, a mechanical filter using a sintered metal powder is developed and coated with catalytic material to improve the soot oxidation efficiency. Low NOx emissions are achieved by an efficient NOx reduction catalyst. The integrated E4 Mistra system comprises four technological advances: thermoelectric (TE) materials for heat recuperation, catalytic reduction of NOx over innovative catalyst substrates using either the onboard diesel or biodiesel, H2 from a high-efficiency fuel reformer, and particulate filtration over a porous metal filter. The TE materials are used in a TE generator (TEG) which converts thermal energy into electricity. The TEG is used to recuperate heat from the exhaust-gas recirculation (EGR) circuit of heavy-duty trucks and is expected to generate ~1 kW electric power from 20 kW heat in the exhaust gas. The TEG is integrated in a plate heat exchanger (HEX) designed particularly for this application. Apart from the knowledge and experiences in TEG and heat exchange technologies, a thorough fluid dynamics and TE analysis are performed in this project to understand the governing processes and optimize the system accordingly. The components of the E4 Mistra system are explained in the chapter in addition to test results, which show the system's capacity for H2 production, NOx conversion, particulate matter filtration and soot oxidation, and finally electric power generation via heat recuperation from the exhaust gas using the developed TEG-HEX system.
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- Eklöf, Vincy, 1984-, et al.
(författare)
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The Combined Value of Faecal Haemoglobin andCalprotectin in Diagnosis of Colorectal Cancer inSymptomatic Patients Referred to Colonoscopy
- 2019
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Ingår i: Academic Journal of Gastroenterology & Hepatology (AJGH). - San Fransisco : Iris Publishers. ; 1:3, s. 1-7
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Aim: To investigate the diagnostic value of a combined analyses of faecal immunological haemoglobin (FIT) and faecal calprotectin (FC) in detection of colorectal cancer (CRC).Methods: Out-patients (n=1440) referred to the endoscopy unit were analysed for FIT and FC in stool samples collected before the colonoscopy bowel preparation. The samples were collected from one defecation by the patients at home. Patients with IBD were excluded leaving stool samples from 1133 patients for further analyses. FIT was analysed using the immunological Analyse F.O.B Test and FC was analysed using the CALPRO® Calprotectin Elisa Test. Sensitivity and specificity to detect CRC was calculated for the individual tests, as well as for combined FIT/FC tests.Results: Out of the included patients, 38 were diagnosed with CRC, 9 with high grade dysplasia (HGD), and 133 with low grade dysplasia (LGD). FIT was analysed in 673 (59.4%), FC in 1021 (90.1%) and both FIT and FC in 561 (49.5%) patients. A ROC curve analysis showed that the most accurate cut-off level for FC in detecting CRC in our study was 105.5 µg/g. The sensitivity for CRC when using FIT, FC (cut-off > 100 µg/g) and the combination of FIT and FC (at least one positive test) was 65.5%, 74.1% and 94.4%, respectively. The corresponding specificity was 84.8%, 74.9% and 68.3%, respectively.Conclusion: Combined analyses of FIT and FC improved sensitivity for detection of CRC. Further studies in larger cohorts are required to find the optimal cut-off levels for different combinations of tests.
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- Gao, Jingfang, 1966-
(författare)
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Molecular and Biological Characteristics of Stroma and Tumor Cells in Colorectal Cancer
- 2008
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Carcinogenesis is a progressive process involving multiple genetic alterations in tumor cells and complex interactions in the tumor-host microenvironment. To better understand the contribution of molecular alterations in tumor cells and stromal variables to the development of colorectal cancer (CRC) and identify prognostic factors, in this study we examined the clinicopathological and biological significance of stromal variables, including particularly interesting new cysteine-histidine rich protein (PINCH), inflammatory infiltration, angiogenesis and lymphangiogenesis, as well as hRAD50/hMRE11/hNBS1 proteins and hRAD50 mutation in tumor cell in CRC.PINCH protein expression in the stroma was increased from normal mucosa to primary tumors and further to lymph node metastases. In particular, PINCH expression was most intense at the tumor invasive margin, which was related to low inflammatory infiltration and independently related to an unfavorable prognosis. Low inflammatory infiltration at the tumor invasive margin was related to advanced tumor stage, worse differentiation and microsatellite instability (MSI). Further, it was independently related to an unfavorable prognosis. Increased blood and lymphatic vessel density was observed in the primary tumors compared with the corresponding normal mucosa. However, neither angiogenesis nor lymphangiogenesis was associated with tumor stage and patients’ survival. Moreover, PINCH was present in a proportion of endothelial cells of the tumor vasculature, and PINCH expression in tumor-associated stroma was positively related to blood vessel density.In primary tumor cells of CRC, strong expression of hRAD50, hMRE11 or hNBS1 was related to microsatellite stability (MSS). A high percentage of hMRE11 expression was associated with less local recurrence and high apoptotic activity. Further, we observed that the expression of hRAD50, hMRE11 or hNBS1 among normal mucosa, primary tumors and metastases in MSS CRC differed from that in MSI CRC. In MSS CRC, the expression intensity of hRAD50, hMRE11 and hNBS1 was consistently increased with respect to normal mucosa, but there was no difference between the primary tumors and metastases. In the primary MSS tumors, the expression of individual or combination of hRAD50/hMRE11/hNBS1 was associated with a favorable prognosis in the same series of the CRCs. Moreover, strong/high hRAD50 in MSS primary tumors was related to earlier tumor stage, better differentiation and high inflammatory infiltration, whereas strong hNBS1 expression tended to be independently related to a favorable prognosis in MSS CRC with earlier tumor stage. However, in MSI CRC, there were neither differences in the expression of hRAD50/hMRE11/hNBS1 among normal mucosa, primary tumors and metastases, nor any association of the protein expressions with clinicopathological variables. On the other hand, frameshift mutations of (A)9 at coding region of hRAD50 were only found in MSI CRC.Our study indicates that 1) PINCH is likely a regulator of angiogenesis, and PINCH expression at the tumor invasive margin is an independent prognostic indicator in CRC. 2) Inflammatory infiltration at the tumor invasive margin is also an independent prognostic indicator in CRC. The lack of association between high inflammatory infiltration and MSI may help to explain the non-association of MSI with survival in CRC patients. 3) Angiogenesis and lymphangiogenesis occur in the early stage of CRC development, but do not associate with CRC progression and patients’ prognosis. 4) hRAD50/hMRE11/hNBS1 may act dependently and independently, playing different roles in MSS and MSI CRC development. In MSS CRC, the strong expression of the three proteins, associated with a favorable prognosis, may present the cellular response against tumor progression. Expression of hNBS1 may be a prognostic indicator for MSS CRC patients in the earlier tumor stage. In MSI CRC, the frameshift mutations at the coding region of hRAD50 may contribute to tumor development.
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- Gkekas, Ioannis, 1981-
(författare)
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Mismatch repair deficiency in colorectal cancer : prognosis and prediction for basic treatment strategies
- 2021
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Colorectal cancer (CRC) remains a significant healthcare problem worldwide, being the third most common cancer and the fourth most frequent cause of cancer death. Environmental and dietary factors such as alcohol abuse, cigarette smoking, and genetic predisposition seem to constitute the main aetiologies.Two major distinct molecular genetic pathways have been recognised as models of transition from normal epithelium to adenoma and carcinoma. The first involves chromosomal instability (CIN) and the second involves microsatellite instability (MSI). The MSI pathway constitutes 2-4% of CRCs with a hereditary Mismatch Repair (MMR) defect (dMMR) and approximately 15% of sporadic MMR defects due to epigenetic silencing of the MutL homologue 1 (MLH1) promoter. Extracellular factors and spontaneous copy errors necessitate molecular systems to survey and repair human genetic information, and to protect it from chemical disruption. A complicated and entangled network of DNA damage response mechanisms, including multiple DNA repair pathways, damage tolerance processes, and cell cycle checkpoints safeguard genomic integrity. It has recently become apparent that key proteins contributing tocellular survival by taking part in DNA repair become executioners in the face of excess DNA damage. All prokaryotic and eukaryotic organisms have major DNA repair pathways. In each of these DNA repair pathways there are key proteins that have dual functions in DNA damage sensing/repair and apoptosis, taking advantage of the fact that DNA is a double helix with the same information present on both strands. Damages that affect one strand can easily be repaired by excision and replacement with newly synthesised DNA using the complementary strand as a template. MMR plays a critical role in the repair of errors that occur spontaneously during DNA replication, such as single base mismatches. dMMR increases the mutation frequency in an affected cell by approximately 1000 times, leading to MSI through the accumulation of short repetitive DNA sequences called microsatellites. Carcinogenesis in dMMR cases can present as hereditary cases (Lynch syndrome) due to germline mutation inin one of the main MMR genes – MLH1, MSH2, MSH6, and PMS2 or somatic/sporadic cases (epigenetic silencing or somatic inactivation of MLH1promoter. dMMR seems to have a favourable prognosis as these CRCs seems to be less prone to metastasising. This phenomenon is much more obvious for tumour stages II and III, while in advanced disease dMMR seems to lose its positive prognostic effect. Even if the underlying mechanism is not fully understood, some studies attribute the positive effect of dMMR tumours to their increased immunogenicity leading to a stronger more effective immune response. On the other hand, the predictive value of the dMMR mechanism isless well understood and has only gained attention in recent years. In general, dMMR seems to predict a poor response to 5-FU, the basis of gastrointestinal chemotherapy.The aims of this thesis were: 1. To review the latest publications on the role of MSI status as prognostic factor in stage II colon cancer (CC) patients (Study I); 2. To validate MMR status as a prognostic factor in patients with CC Stage II (Study II); 3. To verify MMR status as a predictive factor in relation to the administration of adjuvant chemotherapy in patients with stage II CC (Study III); 4. To investigate the potential role of MMR status as a risk factor for acute CC surgery (Study IV); and finally 5. To investigate the association between CRC with sporadic dMMR and non-colorectal malignancy (Study V).Study I, a meta-analysis reviewing recently published papers, revealed that MSI status in stage II CC patients does not seem to affect overall survival (OS)and disease-free survival (DFS). This lack of impact could be explained by selection bias and the extremely high proportion of patients receiving adjuvant chemotherapy in the studies included. This was the first meta-analysis specifically evaluating patients with colon cancer stage II. The optimal treatment algorithm for these patients remains unclear, and approximately 20% experience relapse and finally die from disseminated disease.Study II verified the prognostic role of MMR status in patients with stage II CC. Patients with a dMMR tumour have a significantly lower risk for cancer recurrence, a finding that is particularly important for CC treatment. This relationship does not correlate to a better OS since these patients are older and often die from other causes. Debate on the best postoperative strategy in stage II CC continues. What this study contributes is the idea that determination of MMR status can have prognostic value in these patients.Study III also verified the predictive role of MMR status in patients with stageII CC, only this time in relation to treatment with adjuvant chemotherapy. Patients with proficient MMR (pMMR) status receiving adjuvant chemotherapy have a significantly better OS than those not receiving adjuvant treatment. This relationship was not seen in patients with a dMMR tumour. Furthermore, patients with a pMMR tumour receiving adjuvant treatment have a significantly longer survival time after the first relapse compared to those not receiving adjuvant treatment.Study IV revealed the higher probability of dMMR tumours to present as a surgical emergency. Stage III and IV tumours were also associated with acute surgery. This association was significant regardless of the potential bias due toretrospective methodology and possible heterogeneity between the differentcohorts. Further research is required before our conclusions can be applied in clinical practice due to the multicomplex relationship and interactions between variables that influence the oncologic outcome of acute CC surgery.Study V revealed that patients with sporadic, non-hereditary dMMR CRC run a greater risk for having non-colorectal cancer prior to or after the diagnosis ofCRC. This implies that patients with a dMMR tumour should be screened for other non-colorectal cancer, more so than in the the general population.Conclusion: CRC continues to be a significant healthcare problem worldwide, and treatment algorithms for patients with different genomic backgrounds can vary significantly. This thesis supports the idea of using MMR status as a prognostic and predictive factor in everyday clinical practice, especially in stage II CC and acute cases.
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