| 1. |
- Campmier, Mark Joseph, et al.
(författare)
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Seasonally optimized calibrations improve low-cost sensor performance: long-term field evaluation of PurpleAir sensors in urban and rural India
- 2023
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Ingår i: Atmospheric Measurement Techniques. - 1867-1381 .- 1867-8548. ; 16:19, s. 4357-4374
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Tidskriftsartikel (refereegranskat)abstract
- Lower-cost air pollution sensors can fill critical air quality data gaps in India, which experiences very high fine particulate matter (PM2.5) air pollution but has sparse regulatory air monitoring. Challenges for low-cost PM2.5 sensors in India include high-aerosol mass concentrations and pronounced regional and seasonal gradients in aerosol composition. Here, we report on a detailed long-time performance evaluation of a popular sensor, the Purple Air PA-II, at multiple sites in India. We established three distinct sites in India across land use categories and population density extremes (in urban Delhi and rural Hamirpur in north India and urban Bengaluru in south India), where we collocated the PA-II model with reference beta attenuation monitors. We evaluated the performance of uncalibrated sensor data, and then developed, optimized, and evaluated calibration models using a comprehensive feature selection process with a view to reproducibility in the Indian context. We assessed the seasonal and spatial transferability of sensor calibration schemes, which is especially important in India because of the paucity of reference instrumentation. Without calibration, the PA-II was moderately correlated with the reference signal (R2Combining double low line 0.55-0.74) but was inaccurate (NRMSE ≥ 40 %). Relative to uncalibrated data, parsimonious annual calibration models improved the PurpleAir (PA) model performance at all sites (cross-validated NRMSE 20 %-30 %; R2Combining double low line 0.82-0.95), and greatly reduced seasonal and diurnal biases. Because aerosol properties and meteorology vary regionally, the form of these long-term models differed among our sites, suggesting that local calibrations are desirable when possible. Using a moving-window calibration, we found that using seasonally specific information improves performance relative to a static annual calibration model, while a short-term calibration model generally does not transfer reliably to other seasons. Overall, we find that the PA-II model can provide reliable PM2.5 data with better than ±25 % precision and accuracy when paired with a rigorous calibration scheme that accounts for seasonality and local aerosol composition.
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| 2. |
- Ding, Yuan C, et al.
(författare)
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A nonsynonymous polymorphism in IRS1 modifies risk of developing breast and ovarian cancers in BRCA1 and ovarian cancer in BRCA2 mutation carriers
- 2012
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Ingår i: Cancer Epidemiology, Biomarkers and Prevention. - : American Association for Cancer Research. - 1055-9965 .- 1538-7755. ; 21:8, s. 1362-1370
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: We previously reported significant associations between genetic variants in insulin receptor substrate 1 (IRS1) and breast cancer risk in women carrying BRCA1 mutations. The objectives of this study were to investigate whether the IRS1 variants modified ovarian cancer risk and were associated with breast cancer risk in a larger cohort of BRCA1 and BRCA2 mutation carriers.METHODS: IRS1 rs1801123, rs1330645, and rs1801278 were genotyped in samples from 36 centers in the Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA). Data were analyzed by a retrospective cohort approach modeling the associations with breast and ovarian cancer risks simultaneously. Analyses were stratified by BRCA1 and BRCA2 status and mutation class in BRCA1 carriers.RESULTS: Rs1801278 (Gly972Arg) was associated with ovarian cancer risk for both BRCA1 (HR, 1.43; 95% confidence interval (CI), 1.06-1.92; P = 0.019) and BRCA2 mutation carriers (HR, 2.21; 95% CI, 1.39-3.52, P = 0.0008). For BRCA1 mutation carriers, the breast cancer risk was higher in carriers with class II mutations than class I mutations (class II HR, 1.86; 95% CI, 1.28-2.70; class I HR, 0.86; 95%CI, 0.69-1.09; P(difference), 0.0006). Rs13306465 was associated with ovarian cancer risk in BRCA1 class II mutation carriers (HR, 2.42; P = 0.03).CONCLUSION: The IRS1 Gly972Arg single-nucleotide polymorphism, which affects insulin-like growth factor and insulin signaling, modifies ovarian cancer risk in BRCA1 and BRCA2 mutation carriers and breast cancer risk in BRCA1 class II mutation carriers.Impact: These findings may prove useful for risk prediction for breast and ovarian cancers in BRCA1 and BRCA2 mutation carriers.
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| 3. |
- Haiman, Christopher A., et al.
(författare)
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A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer
- 2011
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 43:12, s. 61-1210
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Tidskriftsartikel (refereegranskat)abstract
- Estrogen receptor (ER)-negative breast cancer shows a higher incidence in women of African ancestry compared to women of European ancestry. In search of common risk alleles for ER-negative breast cancer, we combined genome-wide association study (GWAS) data from women of African ancestry (1,004 ER-negative cases and 2,745 controls) and European ancestry (1,718 ER-negative cases and 3,670 controls), with replication testing conducted in an additional 2,292 ER-negative cases and 16,901 controls of European ancestry. We identified a common risk variant for ER-negative breast cancer at the TERT-CLPTM1L locus on chromosome 5p15 (rs10069690: per-allele odds ratio (OR) = 1.18 per allele, P = 1.0 x 10(-10)). The variant was also significantly associated with triple-negative (ER-negative, progesterone receptor (PR)-negative and human epidermal growth factor-2 (HER2)-negative) breast cancer (OR = 1.25, P = 1.1 x 10(-9)), particularly in younger women (<50 years of age) (OR = 1.48, P = 1.9 x 10(-9)). Our results identify a genetic locus associated with estrogen receptor negative breast cancer subtypes in multiple populations.
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| 4. |
- Mitra, Kalyan, et al.
(författare)
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Secondary Organic Aerosol (SOA) from Photo-Oxidation of Toluene: 1 Influence of Reactive Nitrogen, Acidity and Water Vapours on Optical Properties
- 2022
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Ingår i: Atmosphere. - : MDPI AG. - 2073-4433. ; 13:7
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Tidskriftsartikel (refereegranskat)abstract
- Many climate models treat the light-absorbing SOA component called “brown carbon” (BrC) as non-light absorbing because its formation and transformations are poorly understood. We therefore investigated the influence of reactive nitrogen (NOx, NH3)-, acidity (H2SO4)-, and water-mediated chemistry on SOA formed by the photo-oxidation of toluene, the subsequent formation and transformation of BrC, and its optical properties. We discovered that nitrogen-poor (NP) SOA is formed when the molar ratio of NOx to reacted toluene (henceforth, [NOx/ΔHC]) is 0.15 or less, whereas nitrogen-rich (NR) SOA is formed when [NOx/ΔHC] > 0.15. NR and NP SOA have markedly different characteristics. The light absorption coefficient (Babs) and mass absorption cross-section (MAC) of the SOA increased with [NOx/ΔHC] under both the NP and NR regimes. For NP SOA, the MAC increased with [NOx/ΔHC] independently of the relative humidity (RH). However, the MAC of NR SOA was RH-dependent. Under both NP and NR regimes, acidity promoted SOA browning while NH3 increased Babs and MAC at 80% RH. The highest MAC was observed at the lowest RH (20%) for acidic NR SOA, and it was postulated that the MAC of SOA depends mainly on the pH and the [H+]free/[SOA mass] ratio of the aqueous SOA phase.
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| 5. |
- Prakash, Jai, et al.
(författare)
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Characterization of Propane Fueled Flames: A Significant Source of Brown Carbon
- 2022
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Ingår i: Atmosphere. - : MDPI AG. - 2073-4433. ; 13:8
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Tidskriftsartikel (refereegranskat)abstract
- In this study, we developed a framework for interpreting the in situ morphological properties of black carbon (BC, also referred to as “soot” due to combustion relevance) mixed with primary organic aerosol. Integration of the experiment considering primary organic aerosol (POA) evaporation from the soot particles was examined using a Differential mass–mobility analyzer (DMA) and showed the untold story of the mixing of BC and POA. We also hypothesize that morphological transformation of soots and determined such as (i) the evaporation of externally and internally mixed POA led to a decline in the particle number and size of monodisperse aerosol; (ii) presence of externally mixed BC was interpreted from the occurrence of two peaks of soot upon heating; (iii) heat-induced collapse of the BC core possibly resulted from the evaporation of material from the voids and effect of heat; (iv) volume equivalent to changes in the mobility diameter represented evaporation of POA from the surface and collapse upon heating. POA constituted a high fraction (20–40% by mass) of aerosol mass from these flames and was predominantly (i.e., 92–97% by mass) internally mixed with BC. POA was found to be highly light absorptive, i.e., an Ångström absorption exponent (AAE) value of (in general) >1.5 was estimated for BC + POA at 405/781 nm wavelengths. Interestingly, a much more highly absorptive POA [mass absorption cross-section (MAC)-5 m2 g−1] at 405 nm was discovered under a specific flame setting, which was comparable to MACs of BC particles (8–9 m2 g−1).
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| 6. |
- Prakash, Jai, et al.
(författare)
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Characterization, sources, and atmospheric transformation of a few key short-lived climate pollutants (SLCPs) at a rural super-site in the Indo-Gangetic Plain (IGP) of India
- 2022
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Ingår i: Environmental Science: Atmospheres. - : Royal Society of Chemistry (RSC). - 2634-3606. ; 2, s. 517-538
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Tidskriftsartikel (refereegranskat)abstract
- The Indo-Gangetic Plain (IGP) region of India faces some of the most severe air pollution problems on Earth that threaten human health, food security, ecosystems, environmental sustainability, and the climate. The aim of this study is to identify and characterize the sources of key short-lived climate pollutants (SLCPs) - black carbon (BC), brown carbon (BrC), and ozone (O3) - as well as other pollutants [carbon monoxide (CO) and nitrogen oxides NOX = NO and NO2], and interlinked atmospheric processes of their formation and transformation at our long-term air pollution monitoring station in a remote rural IGP site, the Indo-Gangetic Plains Centre for Air Research and Education (IGP-CARE). Because of its location, measurements acquired at IGP-CARE provide otherwise new information on the key SLCPs in the IGP region at a remote and rural location. The year-long measurement data at this remote site provided new insights into the variability of SLCP concentration and interlinked atmospheric processes that affect air quality in the rural IGP region. Thirteen episodic events (E1-E13) of elevated BC and BrC concentrations were identified, which can largely be attributed to the local biomass burning activities in the neighboring rural communities. It is suggested that high concentrations of BrC were mostly primary in nature and thought to be co-emitted with BC from biomass burning. Also, secondary pollutant tropospheric O3 showed elevated concentration. O3 peaks were mostly attributed to local ozone formation. Nevertheless, on several occasions, O3 emission was also attributed to regional urban areas. This study's most important finding is that BrC concentrations were relatively high throughout the year with very pronounced diurnal variation with distinct morning and evening peaks in general and a minimum at around noon time; this is hypothesized to be associated with daytime photochemical processes. Analyses using a conditional bivariate probability function (CBPF) and potential source contribution function (PSCF) suggest that regional sources likely affected the local concentrations of SLCPs. These results partly explain the high concentrations and spatial distributions of SLCPs at the local and regional scales at the IGP-CARE site in winter and autumn. In contrast, in the summer and monsoon seasons, strong convection likely favored the dilution of pollutants.
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| 7. |
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| 8. |
- Srinivasaragavan, Gokul P., et al.
(författare)
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Characterizing the Ordinary Broad-line Type Ic SN 2023pel from the Energetic GRB 230812B
- 2024
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Ingår i: Astrophysical Journal Letters. - 2041-8205 .- 2041-8213. ; 960:2
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Tidskriftsartikel (refereegranskat)abstract
- We report observations of the optical counterpart of the long gamma-ray burst (GRB) GRB 230812B and its associated supernova (SN) SN 2023pel. The proximity (z = 0.36) and high energy (Eγ,iso ∼ 1053 erg) make it an important event to study as a probe of the connection between massive star core collapse and relativistic jet formation. With a phenomenological power-law model for the optical afterglow, we find a late-time flattening consistent with the presence of an associated SN. SN 2023pel has an absolute peak r-band magnitude of Mr = −19.46 ± 0.18 mag (about as bright as SN 1998bw) and evolves on quicker timescales. Using a radioactive heating model, we derive a nickel mass powering the SN of MNi = 0.38 ± 0.01 M⊙ and a peak bolometric luminosity of Lbol ∼ 1.3 × 1043 erg s−1. We confirm SN 2023pel's classification as a broad-line Type Ic SN with a spectrum taken 15.5 days after its peak in the r band and derive a photospheric expansion velocity of vph = 11,300 ± 1600 km s−1 at that phase. Extrapolating this velocity to the time of maximum light, we derive the ejecta mass Mej = 1.0 ± 0.6 M⊙ and kinetic energy EKE = 1.3 +3.3/-1.2 x 1051 erg. We find that GRB 230812B/SN 2023pel has SN properties that are mostly consistent with the overall GRB-SN population. The lack of correlations found in the GRB-SN population between SN brightness and Eγ,iso for their associated GRBs across a broad range of 7 orders of magnitude provides further evidence that the central engine powering the relativistic ejecta is not coupled to the SN powering mechanism in GRB-SN systems.
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| 9. |
- Stevens, Kristen N, et al.
(författare)
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19p13.1 is a triple negative-specific breast cancer susceptibility locus
- 2012
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Ingår i: Cancer Research. - 0008-5472 .- 1538-7445. ; 72, s. 1795-
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Tidskriftsartikel (refereegranskat)abstract
- The 19p13.1 breast cancer susceptibility locus is a modifier of breast cancer risk in BRCA1 mutation carriers and is also associated with risk of ovarian cancer. Here we investigated 19p13.1 variation and risk of breast cancer subtypes, defined by estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor-2 (HER2) status, using 48,869 breast cancer cases and 49,787 controls from the Breast Cancer Association Consortium (BCAC). Variants from 19p13.1 were not associated with breast cancer overall or with ER-positive breast cancer but were significantly associated with ER-negative breast cancer risk [rs8170 Odds Ratio (OR)=1.10, 95% Confidence Interval (CI) 1.05 - 1.15, p=3.49 x 10-5] and triple negative (TN) (ER, PR and HER2 negative) breast cancer [rs8170 OR=1.22, 95% CI 1.13 - 1.31, p=2.22 x 10-7]. However, rs8170 was no longer associated with ER-negative breast cancer risk when TN cases were excluded [OR=0.98, 95% CI 0.89 - 1.07, p=0.62]. In addition, a combined analysis of TN cases from BCAC and the Triple Negative Breast Cancer Consortium (TNBCC) (n=3,566) identified a genome-wide significant association between rs8170 and TN breast cancer risk [OR=1.25, 95% CI 1.18 - 1.33, p=3.31 x 10-13]. Thus, 19p13.1 is the first triple negative-specific breast cancer risk locus and the first locus specific to a histological subtype defined by ER, PR, and HER2 to be identified. These findings provide convincing evidence that genetic susceptibility to breast cancer varies by tumor subtype and that triple negative tumors and other subtypes likely arise through distinct etiologic pathways.
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| 10. |
- Stevens, Kristen N., et al.
(författare)
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Common Breast Cancer Susceptibility Loci Are Associated with Triple-Negative Breast Cancer
- 2011
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Ingår i: Cancer Research. - 1538-7445. ; 71:19, s. 6240-6249
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Tidskriftsartikel (refereegranskat)abstract
- Triple-negative breast cancers are an aggressive subtype of breast cancer with poor survival, but there remains little known about the etiologic factors that promote its initiation and development. Commonly inherited breast cancer risk factors identified through genome-wide association studies display heterogeneity of effect among breast cancer subtypes as defined by the status of estrogen and progesterone receptors. In the Triple Negative Breast Cancer Consortium (TNBCC), 22 common breast cancer susceptibility variants were investigated in 2,980 Caucasian women with triple-negative breast cancer and 4,978 healthy controls. We identified six single-nucleotide polymorphisms, including rs2046210 (ESR1), rs12662670 (ESR1), rs3803662 (TOX3), rs999737 (RAD51L1), rs8170 (19p13.1), and rs8100241 (19p13.1), significantly associated with the risk of triple-negative breast cancer. Together, our results provide convincing evidence of genetic susceptibility for triple-negative breast cancer. Cancer Res; 71(19); 6240-9. (C)2011 AACR.
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