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1.
  • Grüning, Björn, et al. (författare)
  • Bioconda: A sustainable and comprehensive software distribution for the life sciences
  • 2017
  • Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
    • We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multi-platform and language-agnostic package manager Conda. Currently, Bioconda offers a collection of over 3000 software packages, which is continuously maintained, updated, and extended by a growing global community of more than 200 contributors. Bioconda improves analysis reproducibility by allowing users to define isolated environments with defined software versions, all of which are easily installed and managed without administrative privileges.
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2.
  • Laycock Pedersen, Rebecca, et al. (författare)
  • Distinguishing transdisciplinary (and) action research in sustainability science : a comparative systematic-narrative hybrid literature review
  • Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
    • There are many socially engaged research modes in sustainability science. The main ones are action research and transdisciplinary research. There is also transdisciplinary action research, a field that seems to combine the two. This paper aims to provide a better understanding of the differences between these research modes in the context of sustainability science to help potential users to determine appropriate research mode(s) to fulfil their purposes. To do so, we asked three research questions: (i) What are the aims of these research modes? (ii) What are some methods used to fulfil the aims of these research modes? (iii) In what empirical domain are the different approaches being used today? Using a comparative systematic-narrative hybrid literature review and bibliometric studies the paper attempts to fulfil the set aim. In total, we analysed 1487 articles in-depth, of which 633 utilised the action research mode, 787 used transdisciplinary research, and 67 used transdisciplinary action research. There are a lot of similarities between the research modes, e.g. they all use traditional qualitative social science research methods, engage the same types of stakeholders, and address the same sustainability issues. But the differences relate to the aims of the research modes. Researchers employing action research seem to be more intent on achieving action in the practice domain and knowledge from that action for both practitioners and researchers (action-for-knowledge). In contrast, researchers employing transdisciplinary research rather seem to be more intent on producing new, relevant and shared knowledge for an action that is later undertaken in the practice domain (knowledge-for-action). Although this might be a premature conclusion, researchers employing transdisciplinary action research seem to be more intent on achieving action based on integrative knowledge (integrative knowledge-for-action). Finally, some advice regarding the choice of research mode for a particular purpose is presented.
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