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| 2. |
- De Beeck, Michiel Op, et al.
(författare)
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Elucidating fungal decomposition of organic matter at sub-micrometer spatial scales using optical photothermal infrared (O-PTIR) microspectroscopy
- 2024
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Ingår i: Applied and Environmental Microbiology. - 0099-2240. ; 90:2
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Tidskriftsartikel (refereegranskat)abstract
- In microbiological studies, a common goal is to link environmental factors to microbial activities. Both environmental factors and microbial activities are typically derived from bulk samples. It is becoming increasingly clear that such bulk environmental parameters poorly represent the microscale environments microorganisms experience. Using infrared (IR) microspectroscopy, the spatial distribution of chemical compound classes can be visualized, making it a useful tool for studying the interactions between microbial cells and their microenvironments. The spatial resolution of conventional IR microspectroscopy has been limited by the diffractionlimit of IR light. The recent development of optical photothermal infrared (O-PTIR) microspectroscopy has pushed the spatial resolution of IR microspectroscopy beyond this diffractionlimit, allowing the distribution of chemical compound classes to be visualized at sub-micrometer spatial scales. To examine the potential and limitations of O-PTIR microspectroscopy to probe the interactions between fungal cells and their immediate environments, we imaged the decomposition of cellulose filmsby cells of the ectomycorrhizal fungus Paxillus involutus and compared O-PTIR results using conventional IR microspectroscopy. Whereas the data collected with conventional IR microspectroscopy indicated that P. involutus has only a very limited ability to decompose cellulose films,O-PTIR data suggested that the ability of P. involutus to decompose cellulose was substantial. Moreover, the O-PTIR method enabled the identificationof a zone located outside the fungal hyphae where the cellulose was decomposed by oxidation. We conclude that O-PTIR can provide valuable new insights into the abilities and mechanisms by which microorganisms interact with their surrounding environments.
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| 3. |
- Faarinen, Mikko, et al.
(författare)
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Al-26 at the AMS facility in Lund
- 2004
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Ingår i: Nuclear Instruments & Methods in Physics Research. Section B: Beam Interactions with Materials and Atoms. - : Elsevier BV. - 0168-583X. ; 223-24, s. 130-134
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Tidskriftsartikel (refereegranskat)abstract
- To broaden the AMS programme in Lund by including Al studies, a new injector has been installed and tested at the 3 MV Pelletron accelerator. Detailed optical calculations have been performed to obtain maximum mass and energy resolution. The design of the injector, the improvement in the resolution compared to the old injector, as well as preliminary tests with a Al-26-beam, are presented. By using accelerator mass spectrometry (AMS) to measure the long-lived aluminium isotope Al-26 it has become possible to study the uptake, distribution and retention of aluminium in biological system under physiologically realistic conditions. Results from a pilot project on Al-26 in wheat plants are presented.
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| 4. |
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| 5. |
- Hellborg, Ragnar, et al.
(författare)
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A high resolution AMS-injector for the Pelletron in Lund
- 2002
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Ingår i: Pramana. - 0973-7111. ; 59:6, s. 1061-1073
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Tidskriftsartikel (refereegranskat)abstract
- A high resolution injector system has recently been installed at the Lund 3 MV tandem Pelletron accelerator. The new injector, designed mainly for Al-26 ions, will increase the experimental potential of the Lund AMS facility considerably. High quality energy- and mass-resolution is obtained by using a 90degrees spherical electrostatic analyzer followed by a 90degrees magnetic analyzer. The injector is equipped with a high intensity sputtering source with a spherical ionizer. A new analytical technique for acceptance calculations as well as PC-based computational methods have been used in the design of the ion optical system of the new injector. Compared to our old injector system which has a magnetic analyzer with a bending angle of only 15degrees, the new system has a more than ten times better resolution. The beam optics of the new system is also better designed to match the accelerator acceptance. In this way the ion transmission from the ion source to the detector, for different ions of interest in our AMS programme, has been increased.
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| 6. |
- Hellborg, Ragnar, et al.
(författare)
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Accelerator mass spectrometry
- 2003
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Ingår i: Romanian Journal of Physics. - 1221-146X. ; 48:1-4, s. 27-37
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Konferensbidrag (refereegranskat)abstract
- Accelerator mass spectrometry (AMS) is a world-wide spread technique and nearly 50 AMS laboratories exist today. The most widely spread application of AMS is for radiocarbon dating and an estimated total of nearly 100000 14C samples are measured per year. Other isotopes used are 10Be, 26Al, 36Cl, 41Ca, 129I. The number of these measured per year is estimated to be 10% of the number of 14C samples or even less
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| 7. |
- Hellborg, Ragnar, et al.
(författare)
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Accelerator mass spectrometry - an overview
- 2003
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Ingår i: Vacuum. - 0042-207X. ; 70:2-3, s. 365-372
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Tidskriftsartikel (refereegranskat)abstract
- The technique of accelerator mass spectrometry (AMS) has spread worldwide since its first demonstration 25 years ago. The equipment used today is very diverse and dedicated accelerators as well as old "nuclear physics machines" can be found in the nearly 50 AMS laboratories today. The most widely spread application of AMS is for radiocarbon dating. However, AMS with C-14 as well as with other long-lived isotopes have also found applications in many other fields in physics and beyond.
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| 8. |
- Karlsson, Torbjörn, et al.
(författare)
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Characterization of iron(III) in organic soils using extended X-ray absorption fine structure spectroscopy
- 2008
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Ingår i: Environmental Science and Technology. - : American Chemical Society (ACS). - 0013-936X .- 1520-5851. ; 42:15, s. 5449-5454
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Tidskriftsartikel (refereegranskat)abstract
- The distribution of different iron (Fe) species in soils, sediments, and surface waters has a large influence on the mobility and availability of Fe, other nutrients, and potentially toxic trace elements. However, the knowledge about the specific forms of Fe that occurs in these systems is limited, especially regarding associations of Fe with natural organic matter (NOM). In this study, extended X-ray absorption fine structure (EXAFS) spectroscopy was used to characterize Fe(III) in organic soils (pH 4.6-6.0) with varying natural Fe content. The EXAFS data were subjected to wavelet transform analysis, to facilitate the identification of the nature of backscattering atoms, and to conventional EXAFS data fitting. The collective results showed the existence of two pools of iron: mononuclear Fe(III)-NOM complexes and precipitated Fe(III) (hydr)oxides. In the soil with lowest pH (4.6) and Fe content mononuclear organic complexes were the completely dominating fraction whereas in soils with higher pH and Fe content increasing amounts of Fe (hydr)oxides were detected. These results are of environmental importance, as the different iron pools most likely have markedly different reactivities.
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| 9. |
- Nicolás, César, et al.
(författare)
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The soil organic matter decomposition mechanisms in ectomycorrhizal fungi are tuned for liberating soil organic nitrogen
- 2018
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Ingår i: ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370.
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Tidskriftsartikel (refereegranskat)abstract
- Many trees form ectomycorrhizal symbiosis with fungi. During symbiosis, the tree roots supply sugar to the fungi in exchange for nitrogen, and this process is critical for the nitrogen and carbon cycles in forest ecosystems. However, the extents to which ectomycorrhizal fungi can liberate nitrogen and modify the soil organic matter and the mechanisms by which they do so remain unclear since they have lost many enzymes for litter decomposition that were present in their free-living, saprotrophic ancestors. Using time-series spectroscopy and transcriptomics, we examined the ability of two ectomycorrhizal fungi from two independently evolved ectomycorrhizal lineages to mobilize soil organic nitrogen. Both species oxidized the organic matter and accessed the organic nitrogen. The expression of those events was controlled by the availability of glucose and inorganic nitrogen. Despite those similarities, the decomposition mechanisms, including the type of genes involved as well as the patterns of their expression, differed markedly between the two species. Our results suggest that in agreement with their diverse evolutionary origins, ectomycorrhizal fungi use different decomposition mechanisms to access organic nitrogen entrapped in soil organic matter. The timing and magnitude of the expression of the decomposition activity can be controlled by the below-ground nitrogen quality and the above-ground carbon supply.
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| 10. |
- Op De Beeck, Michiel, et al.
(författare)
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Fenton reaction facilitates organic nitrogen acquisition by an ectomycorrhizal fungus
- 2018
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Ingår i: New Phytologist. - : Wiley. - 0028-646X. ; 218:1, s. 335-343
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Tidskriftsartikel (refereegranskat)abstract
- Boreal trees rely on their ectomycorrhizal fungal symbionts to acquire growth-limiting nutrients, such as nitrogen (N), which mainly occurs as proteins complexed in soil organic matter (SOM). The mechanisms for liberating this N are unclear as ectomycorrhizal fungi have lost many genes encoding lignocellulose-degrading enzymes present in their saprotrophic ancestors. We hypothesized that hydroxyl radicals (bullOH), produced by the ectomycorrhizal fungus Paxillus involutus during growth on SOM, are involved in liberating organic N. Paxillus involutus was grown for 7 d on N-containing or N-free substrates that represent major organic compounds of SOM. bullOH production, ammonium assimilation, and proteolytic activity were measured daily. bullOH production was strongly induced when P. involutus switched from ammonium to protein as the main N source. Extracellular proteolytic activity was initiated shortly after the oxidation. Oxidized protein substrates induced higher proteolytic activity than unmodified proteins. Dynamic modeling predicted that bullOH production occurs in a burst, regulated mainly by ammonium and ferric iron concentrations. We propose that the production of bullOH and extracellular proteolytic enzymes are regulated by similar nutritional signals. Oxidation works in concert with proteolysis, improving N liberation from proteins in SOM. Organic N mining by ectomycorrhizal fungi has, until now, only been attributed to proteolysis.
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