SwePub
Tyck till om SwePub Sök här!
Sök i LIBRIS databas

  Extended search

WFRF:(Schott J. M.)
 

Search: WFRF:(Schott J. M.) > Agricultural Sciences > Enhancing rare vari...

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist

Enhancing rare variant interpretation in inherited arrhythmias through quantitative analysis of consortium disease cohorts and population controls

Walsh, Roddy (author)
Academic Medical Center of University of Amsterdam (AMC)
Lahrouchi, Najim (author)
Academic Medical Center of University of Amsterdam (AMC)
Tadros, Rafik (author)
Montreal Heart Institute
show more...
Kyndt, Florence (author)
University of Nantes
Glinge, Charlotte (author)
Copenhagen University Hospital
Postema, Pieter G. (author)
Academic Medical Center of University of Amsterdam (AMC)
Amin, Ahmad S. (author)
Academic Medical Center of University of Amsterdam (AMC)
Nannenberg, Eline A. (author)
Academic Medical Center of University of Amsterdam (AMC),University of Barcelona,Institutd' Investigacions Biomèdiques August Pi iSunyer (IDIBAPS),Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV)
Ware, James S. (author)
Imperial College London,Royal Brompton and Harefield NHS Foundation Trust
Whiffin, Nicola (author)
Imperial College London,Royal Brompton and Harefield NHS Foundation Trust
Mazzarotto, Francesco (author)
Imperial College London,Royal Brompton and Harefield NHS Foundation Trust,Careggi University Hospital,University of Florence
Skoric-Milosavljevic, Doris (author)
Academic Medical Center of University of Amsterdam (AMC)
Krijger, Christian (author)
Academic Medical Center of University of Amsterdam (AMC)
Arbelo, Elena (author)
Babuty, Dominique (author)
University Hospital of Tours
Barajas-Martinez, Hector (author)
Lankenau Institute for Medical Research
Beckmann, Britt M. (author)
German Center for Lung Research (DZL)
Bezieau, Stephane (author)
University of Nantes
Bos, J. Martijn (author)
Mayo Clinic Minnesota
Breckpot, Jeroen (author)
University Hospitals Leuven
Campuzano, Oscar (author)
University of Barcelona,University of Girona,Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV)
Castelletti, Silvia (author)
Istituto Auxologico Italiano
Celen, Candan (author)
Ege University Medical School,Yukioka Hospital
Clauss, Sebastian (author)
German Center for Lung Research (DZL),German Centre for Cardiovascular Research,World Orthopaedic Concern
Corveleyn, Anniek (author)
University Hospitals Leuven
Crotti, Lia (author)
Istituto Auxologico Italiano,University of Milano-Bicocca
Dagradi, Federica (author)
Istituto Auxologico Italiano
de Asmundis, Carlo (author)
Universitair Ziekenhuis Brussel
Denjoy, Isabelle (author)
Hopital Bichat-Claude-Bernard AP-HP
Dittmann, Sven (author)
University Hospital Münster
Ellinor, Patrick T. (author)
Massachusetts Institute of Technology,Massachusetts General Hospital
Ortuno, Cristina Gil (author)
Hospital Virgen de la Arrixaca
Giustetto, Carla (author)
Citta' della Salute e della Scienza Hospital-University of Turin
Gourraud, Jean-Baptiste (author)
University of Nantes
Hazeki, Daisuke (author)
Kagoshima City Hospital
Horie, Minoru (author)
Shiga University of Medical Science
Ishikawa, Taisuke (author)
National Cerebral and Cardiovascular Center
Itoh, Hideki (author)
Hiroshima University Hospital
Kaneko, Yoshiaki (author)
Gunma University
Kanters, Jorgen K. (author)
University of Copenhagen
Kimoto, Hiroki (author)
Nagasaki University
Kotta, Maria-Christina (author)
Istituto Auxologico Italiano
Krapels, Ingrid P. C. (author)
Kurabayashi, Masahiko (author)
Gunma University
Lazarte, Julieta (author)
University of Western Ontario
Leenhardt, Antoine (author)
Hopital Bichat-Claude-Bernard AP-HP
Loeys, Bart L. (author)
Antwerp University Hospital
Lundin, Catarina (author)
Lund University,Lunds universitet,Avdelningen för klinisk genetik,Institutionen för laboratoriemedicin,Medicinska fakulteten,Genetiska och epigenetiska studier av barnleukemi,Forskargrupper vid Lunds universitet,Division of Clinical Genetics,Department of Laboratory Medicine,Faculty of Medicine,Genetic and epigenetic studies of pediatric leukemia,Lund University Research Groups
Makiyama, Takeru (author)
Kyoto University
Mansourati, Jacques (author)
Martins, Raphael P. (author)
Mazzanti, Andrea (author)
Mörner, Stellan (author)
Umeå universitet,Avdelningen för medicin,Centre for Cardiovascular Genetics, Umeå University, Sweden, The European Reference Network for rare, low prevalence and/or complex diseases of the heart: ERN GUARD-Heart, Amsterdam, Netherlands
Napolitano, Carlo (author)
Ohkubo, Kimie (author)
Papadakis, Michael (author)
Rudic, Boris (author)
Molina, Maria Sabater (author)
Sacher, Frederic (author)
Sahin, Hatice (author)
Sarquella-Brugada, Georgia (author)
Sebastiano, Regina (author)
Sharma, Sanjay (author)
Sheppard, Mary N. (author)
Shimamoto, Keiko (author)
Shoemaker, M. Benjamin (author)
Stallmeyer, Birgit (author)
Steinfurt, Johannes (author)
Tanaka, Yuji (author)
Tester, David J. (author)
Usuda, Keisuke (author)
van der Zwaag, Paul A. (author)
Van Dooren, Sonia (author)
Van Laer, Lut (author)
Winbo, Annika (author)
Winkel, Bo G. (author)
Yamagata, Kenichiro (author)
Zumhagen, Sven (author)
Volders, Paul G. A. (author)
Lubitz, Steven A. (author)
Antzelevitch, Charles (author)
Platonov, Pyotr G. (author)
Lund University,Lunds universitet,Kardiologi,Sektion II,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Electrocardiology Research Group - CIEL,Forskargrupper vid Lunds universitet,Cardiology,Section II,Department of Clinical Sciences, Lund,Faculty of Medicine,Lund University Research Groups
Odening, Katja E. (author)
Roden, Dan M. (author)
Roberts, Jason D. (author)
Skinner, Jonathan R. (author)
Tfelt-Hansen, Jacob (author)
van den Berg, Maarten P. (author)
Olesen, Morten S. (author)
Lambiase, Pier D. (author)
Borggrefe, Martin (author)
Hayashi, Kenshi (author)
Rydberg, Annika (author)
Umeå universitet,Pediatrik,The European Reference Network for rare, low prevalence and/or complex diseases of the heart: ERN GUARD-Heart, Amsterdam, Netherlands
Nakajima, Tadashi (author)
Yoshinaga, Masao (author)
Saenen, Johan B. (author)
Kaeaeb, Stefan (author)
Brugada, Pedro (author)
Robyns, Tomas (author)
Giachino, Daniela F. (author)
Ackerman, Michael J. (author)
Brugada, Ramon (author)
Brugada, Josep (author)
Gimeno, Juan R. (author)
Hasdemir, Can (author)
Guicheney, Pascale (author)
Priori, Silvia G. (author)
Schulze-Bahr, Eric (author)
Makita, Naomasa (author)
Schwartz, Peter J. (author)
Shimizu, Wataru (author)
Aiba, Takeshi (author)
Schott, Jean-Jacques (author)
Redon, Richard (author)
Ohno, Seiko (author)
Probst, Vincent (author)
Behr, Elijah R. (author)
Barc, Julien (author)
Bezzina, Connie R. (author)
show less...
 (creator_code:org_t)
 
Nature Publishing Group, 2021
2021
English.
In: Genetics in Medicine. - : Nature Publishing Group. - 1098-3600 .- 1530-0366. ; 23:1, s. 47-58
  • Journal article (peer-reviewed)
Abstract Subject headings
Close  
  • Purpose: Stringent variant interpretation guidelines can lead to high rates of variants of uncertain significance (VUS) for genetically heterogeneous disease like long QT syndrome (LQTS) and Brugada syndrome (BrS). Quantitative and disease-specific customization of American College of Medical Genetics and Genomics/Association for Molecular Pathology (ACMG/AMP) guidelines can address this false negative rate.Methods: We compared rare variant frequencies from 1847 LQTS (KCNQ1/KCNH2/SCN5A) and 3335 BrS (SCN5A) cases from the International LQTS/BrS Genetics Consortia to population-specific gnomAD data and developed disease-specific criteria for ACMG/AMP evidence classes-rarity (PM2/BS1 rules) and case enrichment of individual (PS4) and domain-specific (PM1) variants.Results: Rare SCN5A variant prevalence differed between European (20.8%) and Japanese (8.9%) BrS patients (p = 5.7 x 10(-18)) and diagnosis with spontaneous (28.7%) versus induced (15.8%) Brugada type 1 electrocardiogram (ECG) (p = 1.3 x 10(-13)). Ion channel transmembrane regions and specific N-terminus (KCNH2) and C-terminus (KCNQ1/KCNH2) domains were characterized by high enrichment of case variants and >95% probability of pathogenicity. Applying the customized rules, 17.4% of European BrS and 74.8% of European LQTS cases had (likely) pathogenic variants, compared with estimated diagnostic yields (case excess over gnomAD) of 19.2%/82.1%, reducing VUS prevalence to close to background rare variant frequency.Conclusion: Large case-control data sets enable quantitative implementation of ACMG/AMP guidelines and increased sensitivity for inherited arrhythmia genetic testing.

Subject headings

MEDICIN OCH HÄLSOVETENSKAP  -- Medicinska och farmaceutiska grundvetenskaper -- Medicinsk genetik (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Basic Medicine -- Medical Genetics (hsv//eng)
LANTBRUKSVETENSKAPER  -- Bioteknologi med applikationer på växter och djur -- Genetik och förädling inom lantbruksvetenskap (hsv//swe)
AGRICULTURAL SCIENCES  -- Agricultural Biotechnology -- Genetics and Breeding in Agricultural Sciences (hsv//eng)

Keyword

variant interpretation
LQTS
Brugada
ACMG/AMP guidelines
ACMG/AMP guidelines
Brugada
LQTS
variant interpretation

Publication and Content Type

ref (subject category)
art (subject category)

Find in a library

To the university's database

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist

Find more in SwePub

By the author/editor
Walsh, Roddy
Lahrouchi, Najim
Tadros, Rafik
Kyndt, Florence
Glinge, Charlott ...
Postema, Pieter ...
show more...
Amin, Ahmad S.
Nannenberg, Elin ...
Ware, James S.
Whiffin, Nicola
Mazzarotto, Fran ...
Skoric-Milosavlj ...
Krijger, Christi ...
Arbelo, Elena
Babuty, Dominiqu ...
Barajas-Martinez ...
Beckmann, Britt ...
Bezieau, Stephan ...
Bos, J. Martijn
Breckpot, Jeroen
Campuzano, Oscar
Castelletti, Sil ...
Celen, Candan
Clauss, Sebastia ...
Corveleyn, Annie ...
Crotti, Lia
Dagradi, Federic ...
de Asmundis, Car ...
Denjoy, Isabelle
Dittmann, Sven
Ellinor, Patrick ...
Ortuno, Cristina ...
Giustetto, Carla
Gourraud, Jean-B ...
Hazeki, Daisuke
Horie, Minoru
Ishikawa, Taisuk ...
Itoh, Hideki
Kaneko, Yoshiaki
Kanters, Jorgen ...
Kimoto, Hiroki
Kotta, Maria-Chr ...
Krapels, Ingrid ...
Kurabayashi, Mas ...
Lazarte, Julieta
Leenhardt, Antoi ...
Loeys, Bart L.
Lundin, Catarina
Makiyama, Takeru
Mansourati, Jacq ...
Martins, Raphael ...
Mazzanti, Andrea
Mörner, Stellan
Napolitano, Carl ...
Ohkubo, Kimie
Papadakis, Micha ...
Rudic, Boris
Molina, Maria Sa ...
Sacher, Frederic
Sahin, Hatice
Sarquella-Brugad ...
Sebastiano, Regi ...
Sharma, Sanjay
Sheppard, Mary N ...
Shimamoto, Keiko
Shoemaker, M. Be ...
Stallmeyer, Birg ...
Steinfurt, Johan ...
Tanaka, Yuji
Tester, David J.
Usuda, Keisuke
van der Zwaag, P ...
Van Dooren, Soni ...
Van Laer, Lut
Winbo, Annika
Winkel, Bo G.
Yamagata, Kenich ...
Zumhagen, Sven
Volders, Paul G. ...
Lubitz, Steven A ...
Antzelevitch, Ch ...
Platonov, Pyotr ...
Odening, Katja E ...
Roden, Dan M.
Roberts, Jason D ...
Skinner, Jonatha ...
Tfelt-Hansen, Ja ...
van den Berg, Ma ...
Olesen, Morten S ...
Lambiase, Pier D ...
Borggrefe, Marti ...
Hayashi, Kenshi
Rydberg, Annika
Nakajima, Tadash ...
Yoshinaga, Masao
Saenen, Johan B.
Kaeaeb, Stefan
Brugada, Pedro
Robyns, Tomas
Giachino, Daniel ...
Ackerman, Michae ...
Brugada, Ramon
Brugada, Josep
Gimeno, Juan R.
Hasdemir, Can
Guicheney, Pasca ...
Priori, Silvia G ...
Schulze-Bahr, Er ...
Makita, Naomasa
Schwartz, Peter ...
Shimizu, Wataru
Aiba, Takeshi
Schott, Jean-Jac ...
Redon, Richard
Ohno, Seiko
Probst, Vincent
Behr, Elijah R.
Barc, Julien
Bezzina, Connie ...
show less...
About the subject
MEDICAL AND HEALTH SCIENCES
MEDICAL AND HEAL ...
and Basic Medicine
and Medical Genetics
AGRICULTURAL SCIENCES
AGRICULTURAL SCI ...
and Agricultural Bio ...
and Genetics and Bre ...
Articles in the publication
Genetics in Medi ...
By the university
Umeå University
Lund University

Search outside SwePub

Kungliga biblioteket hanterar dina personuppgifter i enlighet med EU:s dataskyddsförordning (2018), GDPR. Läs mer om hur det funkar här.
Så här hanterar KB dina uppgifter vid användning av denna tjänst.

 
pil uppåt Close

Copy and save the link in order to return to this view