| 1. |
- Zamora, Juan Carlos, et al.
(författare)
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- 2018
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Ingår i: IMA Fungus. - : INT MYCOLOGICAL ASSOC. - 2210-6340 .- 2210-6359. ; 9:1, s. 167-185
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Tidskriftsartikel (refereegranskat)abstract
- Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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| 2. |
- Dillman, Karen L., et al.
(författare)
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New records, range extensions and nomenclatural innovations for lichens and lichenicolous fungi from Alaska, USA
- 2012
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Ingår i: Herzogia. - : Herzogia. - 0018-0971. ; 25:2, s. 177-210
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Tidskriftsartikel (refereegranskat)abstract
- New records, range extensions and nomenclatural innovations for lichens and lichenicolous fungi from Alaska, U.S.A. - Herzogia 25: 177-210. Surveys of lichens and lichenicolous fungi have been taking place in the U.S. state of Alaska for more than 160 years, but until now assessing the full extent of their diversity has been hampered by the lack of a comprehensive and synonymized baseline inventory. In this paper we will begin to redress this by resolving outstanding nomenclatural issues and providing voucher data for a forthcoming catalog of Alaskan lichens, specifically: 1) synonymization,and/or resolution of status of species previously reported from Alaska, with emphasis on Alaskan types; 2) species new to the Alaska lichen biota; and 3) biogeographically significant new records from within Alaska. We report 91 species new to the flora of Alaska, including 65 lichens, three saprophytic calicioid fungi and 23 lichenicolous fungi. Of these, we report thirteen species, Biatora sphaeroidiza, Biatorella conspurcans, Chaenothecopsis arthoniae, Collemopsidium foveolatum, Dactylospora frigida, Halospora discrepans, Lecanora bryopsora, Opegrapha geographicola, Peltigera lyngei, Petractis clausa, Protoblastenia cyclospora, Thelocarpon impressellum and Usnea cylindrica as new to North America. In addition, Arthonia pruinata and Flavocetraria minuscula are new to Canada and Adelococcus alpestris new to the United States. We further place the following five names into synonymy: Lecania disceptans (Nyl.) Lynge [= Halecania alpivaga (Th.Fr.) M.Mayrhofer], Lecidea pallidella Nyl. [= Lecania subfuscula (Nyl.) S.Ekman], Lempholemma triptodes (Nyl.) Zahlbr. Leciophysma finmarkicum Th.Fr.), Polyblastia obtenta (Nyl.) Lynge [= Sporodictyon terrestre (Th.Fr.) S.Savic & Tibell], and Verrucaria pernigrata Nyl. [= Protothelenella sphinctrinoides (Nyl.) H.Mayrhofer & Poelt]. We propose restoring the long overlooked taxon Polyblastia exalbida (Nyl.) Zahlbr., currently known only from Alaska, to the North American lichen checklist. Finally, we propose the new combination Puttea caesia (Fr.) M.Svensson & T.Sprib. to replace Lecidea symmictella Nyl., which becomes a synonym.
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| 3. |
- Ekman, Stefan, et al.
(författare)
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Brianaria (Psoraceae), a new genus to accommodate the Micarea sylvicola group
- 2014
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Ingår i: The Lichenologist. - 0024-2829 .- 1096-1135. ; 46:3, s. 285-294
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Tidskriftsartikel (refereegranskat)abstract
- The new genus Brianaria S. Ekman & M. Svensson is introduced for the Micarea sylvicola group, with the new combinations Brianaria bauschiana (Korb.) S. Ekman & M. Svensson, B. lutulata (Nyl.) S. Ekman & M. Svensson, B. sylvicola (Flot. ex Korb.) S. Ekman & M. Svensson and B. tuberculata (Sommerf.) S. Ekman & M. Svensson. The new genus is characterized by a chlorococcoid, non-micareoid photobiont, small, convex apothecia without an excipulum, an ascus of the 'Psora-type', 0-1-septate ascospores, dimorphic paraphyses, and immersed pycnidia containing bacilliform conidia. Brianaria is shown to form a monophyletic group in the Psoraceae, where it is probably the sister group to Psora and Protoblastenia.
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| 4. |
- Ekman, Stefan, 1965-, et al.
(författare)
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Jakten på Bacidia almquistii
- 2012
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Ingår i: Rödbläran. ; 2012 (1), s. 4-6
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Tidskriftsartikel (populärvet., debatt m.m.)
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| 5. |
- Kantvilas, Gintaras, et al.
(författare)
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Australidea (Malmideaceae, Lecanorales), a new genus of lecideoid lichens, with notes on the genus Malcolmiella
- 2021
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Ingår i: The Lichenologist. - : Cambridge University Press. - 0024-2829 .- 1096-1135. ; 53:5, s. 395-407
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Tidskriftsartikel (refereegranskat)abstract
- The new genus Australidea Kantvilas, Wedin & M. Svensson is described to accommodate Lecidea canorufescens Kremp., a widespread lichen in temperate Australasia. It is characterized by a crustose thallus with a green photobiont, reddish brown, biatorine apothecia with an internally hyaline, cupulate proper exciple constructed of branched and anastomosing hyphae, mainly simple paraphyses, 8-spored, Porpidia-type asci and simple, hyaline, non-halonate ascospores. A phylogenetic analysis places the new genus in the family Malmideaceae. Lecidea canorufescens Kremp., L. glandulosa C. Knight, L. immarginata R. Br. ex Cromb. and L. intervertens Nyl. are lectotypified. These names, plus L. dacrydii Müll. Arg. and L. eucheila Zahlbr., are all synonyms of Australidea canorufescens (Kremp.) Kantvilas, Wedin & M. Svensson comb. nov. Several genera superficially similar to Australidea, including Malcolmiella Vĕzda, Malmidea Kalb et al. and Myochroidea Printzen et al., are compared. A comprehensive anatomical and morphological description of the genus Malcolmiella, recorded for Tasmania for the first time, is also provided. The new combination M. interversa (Nyl.) Kantvilas, Wedin & M. Svensson is introduced and the names M. cinereovirens Vĕzda and M. cinereovirens var. isidiata Vĕzda are reduced to synonyms. The systematic position of this genus remains unclear, although phylogenetic analysis suggests its affinities lie with a group of genera that includes Bryobilimbia Fryday et al., Romjularia Timdal and Clauzadea Hafellner & Bellem.
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| 6. |
- Launis, Annina, et al.
(författare)
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Sharpening species boundaries in the Micarea prasina group, with a new circumscription of the type species M. prasina
- 2019
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Ingår i: Mycologia. - : TAYL. - 0027-5514 .- 1557-2536. ; 111:4, s. 574-592
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Tidskriftsartikel (refereegranskat)abstract
- Micarea is a lichenized genus in the family Pilocarpaceae (Ascomycota). We studied the phylogeny and reassessed the current taxonomy of the M. prasina group. We focused especially on the taxonomic questions concerning the type species M. prasina and, furthermore, challenges concerning type specimens that are too old for successful DNA barcoding and molecular studies. The phylogeny was reconstructed using nuc rDNA internal transcribed spacer region (ITS1-5.8S-ITS2 = ITS), mitochrondrial rDNA small subunit (mtSSU), and replication licensing factor MCM7 gene from 31 species. Fifty-six new sequences were generated. The data were analyzed using maximum parsimony and maximum likelihood methods. The results revealed four undescribed, well-supported lineages. Three lineages represent new species described here as M. fallax, M. flavoleprosa, and M. pusilla. In addition, our results support the recognition of M. melanobola as a distinct species. Micarea fallax is characterized by a vivid to olive green thallus composed of aggregated granules and whitish or brownish apothecia sometimes with grayish tinge (Sedifolia-gray pigment).Micarea flavoleprosa has a thick, wide-spreading yellowish green, whitish green to olive green sorediate thallus and lacks the Sedifolia-gray pigmentation. The species is mostly anamorphic, developing apothecia rarely. Micarea melanobola is characterized by a pale to dark vivid green granular thallus and darkly pigmented apothecia (Sedifolia-gray). Micarea pusilla is characterized by a whitish green to olive green thinly granular or membranous thallus, numerous and very small whitish apothecia lacking the Sedifolia-gray pigment, and by the production of methoxymicareic acid. Micarea fallax, M. flavoleprosa, and M. melanobola produce micareic acid. The reliability of crystalline granules as a character for species delimitation was investigated and was highly informative for linking the old type specimen of M. prasina to fresh material.
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| 7. |
- Palice, Zdenek, et al.
(författare)
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Taxonomy of the genus Myrionora, with a second species from South America
- 2013
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Ingår i: The Lichenologist. - 0024-2829 .- 1096-1135. ; 45:2, s. 159-167
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Tidskriftsartikel (refereegranskat)abstract
- A taxonomic and biogeographic overview of the genus Myrionora is provided. Two species are recognized, M. albidula (Willey) R. C. Harris and M. pseudocyphellariae (Etayo) S. Ekman & Palice comb. nov. The genus is characterized by polysporous asci, the presence of crystals in the hymenium and proper exciple that partly consist of lobaric acid, and a photobiont with large cells (mostly in the range 12-20 mu m). Myrionora albidula is currently known from Germany, Norway, Sweden, the Russian Federation (Altayskiy Kray, Chelyabinskaya Oblast', Khabarovskiy Kray and Zabaykal'skiy Kray), and the United States (Alaska, Connecticut, Maine and Massachusetts). It inhabits bark of deciduous trees and shrubs and conifers over a wide range of latitudes. Myrionora pseudocyphellariae is known from Chile and Ecuador, where it has been encountered on lichens and decaying bark. Based on morphological characteristics, we conclude that Myrionora belongs in the Ramalinaceae.
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| 8. |
- Perez-Ortega, Sergio, et al.
(författare)
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Nimisora (Lecanoraceae, Ascomycota), a new genus for a common lecideoid epiphytic species from the central Iberian Peninsula
- 2023
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Ingår i: The Lichenologist. - : Cambridge University Press (CUP). - 0024-2829 .- 1096-1135. ; 55:5, s. 335-345
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Tidskriftsartikel (refereegranskat)abstract
- The new genus Nimisora Perez-Ort., M. Svenss. & J. C. Zamora is introduced to accommodate a puzzling lecideoid epiphyte common in the central Iberian Peninsula. Nimisora is characterized by the following combination of characters: lecideoid apothecia, excipulum composed of sparingly branched radiating hyphae with narrow lumina, thick walls and swollen terminal cells, the presence of a brown K(+ )olivaceous green pigment in the epihymenium, an ascus tip similar to the Bacidia-type, and the presence of simple ellipsoid ascospores. Molecular analyses based on nrITS, nrLSU and mtSSU sequences unequivocally place the new genus within the Lecanoraceae; however, its phylogenetic affinities with other genera of the family remain largely unresolved. Comparisons with the morphologically closest genera are provided. The single species of the genus, Nimisora iberica Perez-Ort., Turegano, M. Svenss. & J. C. Zamora sp. nov., is also described as new to science.
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| 9. |
- Rydfjord, Jonas, et al.
(författare)
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Temperature measurements with two different IR sensors in a continuous-flow microwave heated system
- 2013
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Ingår i: Beilstein Journal of Organic Chemistry. - : Beilstein Institut. - 2195-951X .- 1860-5397. ; 9, s. 2079-2087
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Tidskriftsartikel (refereegranskat)abstract
- In a continuous-flow system equipped with a nonresonant microwave applicator we have investigated how to best assess the actual temperature of microwave heated organic solvents with different characteristics. This is non-trivial as the electromagnetic field will influence most traditional methods of temperature measurement. Thus, we used a microwave transparent fiber optic probe, capable of measuring the temperature inside the reactor, and investigated two different IR sensors as non-contact alternatives to the internal probe. IR sensor 1 measures the temperature on the outside of the reactor whilst IR sensor 2 is designed to measure the temperature of the fluid through the borosilicate glass that constitutes the reactor wall. We have also, in addition to the characterization of the before mentioned IR sensors, developed statistical models to correlate the IR sensor reading to a correct value of the inner temperature (as determined by the internal fiber optic probe), thereby providing a non-contact, indirect, temperature assessment of the heated solvent. The accuracy achieved with these models lie well within the range desired for most synthetic chemistry applications.
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| 10. |
- Snäll, Tord, et al.
(författare)
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Transient trade-off between climate benefit and biodiversity loss of harvesting stumps for bioenergy
- 2017
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Ingår i: Global Change Biology Bioenergy. - : WILEY. - 1757-1693 .- 1757-1707. ; 9:12, s. 1751-1763
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Tidskriftsartikel (refereegranskat)abstract
- To replace fossil fuel and thereby mitigate climate change, harvesting of wood such as stumps for bioenergy will likely increase. Coarse deadwood is an important resource for biodiversity and stumps comprise the main part of the coarse deadwood in managed forests. We provide the first integrated analysis of the long-term climate and biodiversity impacts of a whole landscape. We simultaneously project climate and biodiversity impacts of harvesting stumps to substitute for fossil coal, assuming scenarios with different proportions of the landscape with stump harvest (10, 50, 80%) the coming 50years. A life cycle approach was used to calculate future global temperature changes and future metapopulation changes in six epixylic lichens. Metapopulation dynamics were projected using colonization and extinction models based on times series data. Harvesting stumps from 50% of the clear-cut forest land benefits climate with a net global temperature reduction >0.5.10(-9)Kha(-1) after 50years if assuming substitution of fossil coal. For all scenarios, using stump bioenergy leads to immediate (within 1year) reductions in temperature of >= 50% compared to using fossil coal, increasing to 70% reduction after 50 years. However, large-scale stump harvest inflicted substantial metapopulation declines for five of six lichens. High stump harvest levels (>= 50%) put common lichens at risk of becoming red-listed following the IUCN criteria. The net temperature reduction (cooling effect) from substituting fossil coal with stumps harvested for bioenergy increased over time, while lichen metapopulations stabilized at lower equilibria after two to three decades. This indicates that trade-offs between climate and metapopulations of commons species are transient, where climate benefits become more prevalent in the long term. As both objectives are important for meeting (inter-)national climate and biodiversity targets, integrated analyses such as this should be encouraged and urged to guide policymaking about large-scale implementation of stump harvest.
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