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1.	Kondelin, J, et al. (author) Comprehensive evaluation of coding region point mutations in microsatellite-unstable colorectal cancer 2018 In: EMBO molecular medicine. - : EMBO. - 1757-4684 .- 1757-4676. ; 10:9 Journal article (peer-reviewed)
2.	Orlando, G, et al. (author) Variation at 2q35 (PNKD and TMBIM1) influences colorectal cancer risk and identifies a pleiotropic effect with inflammatory bowel disease 2016 In: Human molecular genetics. - : Oxford University Press (OUP). - 1460-2083 .- 0964-6906. ; 25:11, s. 2349-2359 Journal article (peer-reviewed)
3.	Berta, DG, et al. (author) Deficient H2A.Z deposition is associated with genesis of uterine leiomyoma 2021 In: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 596:78717872, s. 398-403 Journal article (peer-reviewed)
4.	Cajuso, T, et al. (author) Exome sequencing reveals frequent inactivating mutations in ARID1A, ARID1B, ARID2 and ARID4A in microsatellite unstable colorectal cancer 2014 In: International journal of cancer. - : Wiley. - 1097-0215 .- 0020-7136. ; 135:3, s. 611-623 Journal article (peer-reviewed)
5.	Jarvis, D, et al. (author) Mendelian randomisation analysis strongly implicates adiposity with risk of developing colorectal cancer 2016 In: British journal of cancer. - : Springer Science and Business Media LLC. - 1532-1827 .- 0007-0920. ; 115:2, s. 266-272 Journal article (peer-reviewed)
6.	Tuupanen, S, et al. (author) Identification of 33 candidate oncogenes by screening for base-specific mutations 2014 In: British journal of cancer. - : Springer Science and Business Media LLC. - 1532-1827 .- 0007-0920. ; 111:8, s. 1657-1662 Journal article (peer-reviewed)
7.	Gylfe, AE, et al. (author) Eleven candidate susceptibility genes for common familial colorectal cancer 2013 In: PLoS genetics. - : Public Library of Science (PLoS). - 1553-7404. ; 9:10, s. e1003876- Journal article (peer-reviewed)
8.	Katainen, R, et al. (author) CTCF/cohesin-binding sites are frequently mutated in cancer 2015 In: Nature genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 47:7, s. 818- Journal article (peer-reviewed)
9.	Palin, K, et al. (author) Contribution of allelic imbalance to colorectal cancer 2018 In: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 9:1, s. 3664- Journal article (peer-reviewed)abstract Point mutations in cancer have been extensively studied but chromosomal gains and losses have been more challenging to interpret due to their unspecific nature. Here we examine high-resolution allelic imbalance (AI) landscape in 1699 colorectal cancers, 256 of which have been whole-genome sequenced (WGSed). The imbalances pinpoint 38 genes as plausible AI targets based on previous knowledge. Unbiased CRISPR-Cas9 knockout and activation screens identified in total 79 genes within AI peaks regulating cell growth. Genetic and functional data implicate loss of TP53 as a sufficient driver of AI. The WGS highlights an influence of copy number aberrations on the rate of detected somatic point mutations. Importantly, the data reveal several associations between AI target genes, suggesting a role for a network of lineage-determining transcription factors in colorectal tumorigenesis. Overall, the results unravel the contribution of AI in colorectal cancer and provide a plausible explanation why so few genes are commonly affected by point mutations in cancers.
10.	Pitkanen, E, et al. (author) Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer 2014 In: Oncotarget. - : Impact Journals, LLC. - 1949-2553. ; 5:3, s. 853-859 Journal article (peer-reviewed)

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Type of publication: journal article (10)

Type of content: peer-reviewed (10)

Author/Editor: Taipale, J (10); Cajuso, T (10)Undo refine; Aaltonen, LA (9); Kaasinen, E (8); MECKLIN, JP (8); Kondelin, J (8); show more...; Tanskanen, T (8); Palin, K (7); Katainen, R (7); Jarvinen, H (6); Hanninen, UA (6); Pitkanen, E (6); Vahteristo, P (5); Gylfe, AE (5); Bohm, J. (4); Taipale, M (4); Lepisto, A. (4); Valimaki, N (4); Karhu, A (3); Kaprio, J (2); Aavikko, M (2); Pukkala, E (2); Martin, L (2); Schumacher, F (2); Campbell, H (2); Palotie, A (2); Knekt, P (2); Casey, G (2); Conti, D (2); Gallinger, S (2); Lindor, NM (2); Eriksson, JG (2); Ripatti, S (2); Salomaa, V (2); Andersen, CL (2); Kerr, D (2); Turunen, M (2); Newcomb, PA (2); Taira, A (2); Sahu, B (2); Houlston, RS (2); Buchanan, DD (2); Kaplan, R (2); Kivioja, T (2); Ongen, H (2); Jousilahti, P. (2); Rissanen, H. (2); Palles, C (2); Dunlop, MG (2); Tomlinson, IP (2); show less...

University: Karolinska Institutet (10)

Language: English (10)

Research subject (UKÄ/SCB): Medical and Health Sciences (1)

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