| 1. |
- Bradnam, K. R., et al.
(författare)
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Assemblathon 2 : Evaluating de novo methods of genome assembly in three vertebrate species
- 2013
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Ingår i: GigaScience. - : BioMed Central (BMC). - 2047-217X. ; 2:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are available, but they differ greatly in terms of their performance (speed, scalability, hardware requirements, acceptance of newer read technologies) and in their final output (composition of assembled sequence). More importantly, it remains largely unclear how to best assess the quality of assembled genome sequences. The Assemblathon competitions are intended to assess current state-of-the-art methods in genome assembly. Results: In Assemblathon 2, we provided a variety of sequence data to be assembled for three vertebrate species (a bird, a fish, and snake). This resulted in a total of 43 submitted assemblies from 21 participating teams. We evaluated these assemblies using a combination of optical map data, Fosmid sequences, and several statistical methods. From over 100 different metrics, we chose ten key measures by which to assess the overall quality of the assemblies. Conclusions: Many current genome assemblers produced useful assemblies, containing a significant representation of their genes and overall genome structure. However, the high degree of variability between the entries suggests that there is still much room for improvement in the field of genome assembly and that approaches which work well in assembling the genome of one species may not necessarily work well for another.
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| 2. |
- Merdasa, Aboma, et al.
(författare)
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Microscopic insight into the reversibility of photodegradation in MAPbI3 thin films
- 2020
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Ingår i: Journal of Luminescence. - : Elsevier BV. - 0022-2313. ; 219
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Tidskriftsartikel (refereegranskat)abstract
- Whether optoelectronic devices based on metal-halide perovskite semiconductors will become a commercially viable technology will be determined by their intrinsic and operational stability. Recent results indicate there is some reversibility of perovskite degradation in thin films and devices, although mechanistic insight into the processes driving degradation and recovery are still scarce. We here present a comparative spectroscopic study of methylammonium lead iodide (MAPbI3) films having undergone either photo- or thermal degradation under controlled conditions. We confirm that the degradation mechanism pertaining to each type of stress is inherently different. Our results from photoluminescence microscopy measurements paint a spatially, spectrally and temporarily resolved picture showing that, unlike thermally degraded samples, photodegraded samples are in a state that intermittently recovers to luminescent MAPbI3 upon laser excitation. This indicates that rather than irreversibly decomposing, photoinduced degradation leaves MAPbI3 structurally or compositionally intact but induces defects causing non-radiative recombination losses.
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