| 1. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
- Wang, Fang, et al.
(författare)
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Emerging contaminants: A One Health perspective
- 2024
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Ingår i: Innovation. - 2666-6758. ; 5
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Forskningsöversikt (refereegranskat)abstract
- Environmental pollution is escalating due to rapid global development that often prioritizes human needs over planetary health. Despite global efforts to mitigate legacy pollutants, the continuous introduction of new substances remains a major threat to both people and the planet. In response, global initiatives are focusing on risk assessment and regulation of emerging contaminants, as demonstrated by the ongoing efforts to establish the UN's Intergovernmental Science-Policy Panel on Chemicals, Waste, and Pollution Prevention. This review identifies the sources and impacts of emerging contaminants on planetary health, emphasizing the importance of adopting a One Health approach. Strategies for monitoring and addressing these pollutants are discussed, underscoring the need for robust and socially equitable environmental policies at both regional and international levels. Urgent actions are needed to transition toward sustainable pollution management practices to safeguard our planet for future generations.
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| 3. |
- Armesto, N., et al.
(författare)
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Heavy-ion collisions at the LHC-Last call for predictions
- 2008
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Ingår i: Journal of Physics G. - : IOP Publishing. - 0954-3899 .- 1361-6471. ; 35:5, s. 054001-
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Forskningsöversikt (refereegranskat)abstract
- This writeup is a compilation of the predictions for the forthcoming Heavy Ion Program at the Large Hadron Collider, as presented at the CERN Theory Institute 'Heavy Ion Collisions at the LHC - Last Call for Predictions', held from 14th May to 10th June 2007.
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| 4. |
- Yu, Congyu, et al.
(författare)
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Artificial intelligence in paleontology
- 2024
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Ingår i: Earth-Science Reviews. - 0012-8252 .- 1872-6828. ; 252
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Forskningsöversikt (refereegranskat)abstract
- The accumulation of large datasets and increasing data availability have led to the emergence of data-driven paleontological studies, which reveal an unprecedented picture of evolutionary history. However, the fast-growing quantity and complication of data modalities make data processing laborious and inconsistent, while also lacking clear benchmarks to evaluate data collection and generation, and the performances of different methods on similar tasks. Recently, artificial intelligence (AI) has become widely practiced across scientific disciplines, but not so much to date in paleontology where traditionally manual workflows have been more usual. In this study, we review >70 paleontological AI studies since the 1980s, covering major tasks including micro- and macrofossil classification, image segmentation, and prediction. These studies feature a wide range of techniques such as Knowledge-Based Systems (KBS), neural networks, transfer learning, and many other machine learning methods to automate a variety of paleontological research workflows. Here, we discuss their methods, datasets, and performance and compare them with more conventional AI studies. We attribute the recent increase in paleontological AI studies most to the lowering of the entry bar in training and deployment of AI models rather than innovations in fossil data compilation and methods. We also present recently developed AI implementations such as diffusion model content generation and Large Language Models (LLMs) that may interface with paleontological research in the future. Even though AI has not yet been a significant part of the paleontologist's toolkit, successful implementation of AI is growing and shows promise for paradigm-transformative effects on paleontological research in the years to come.
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| 5. |
- Zecheng, Li, et al.
(författare)
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Fecal microbiota transplantation in obesity metabolism : A meta analysis and systematic review
- 2023
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Ingår i: Diabetes Research and Clinical Practice. - 0168-8227. ; 202
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Forskningsöversikt (refereegranskat)abstract
- Objective: The effect of fecal microbiota transplantation (FMT) on microbiota engraftment in patients with metabolic syndrome remains unclear. This systematic review employed a meta-analysis of RCTs for assessment on the role of FMT in treating obesity and metabolic syndrome, and its impact on clinically relevant parameters. Method: Major databases and grey literatures were searched identifying RCTs comparing FMT of lean donors with placebo in obese/metabolic syndrome patients. Studies using any form of placebo were included. Variations in the parameters before and after treatment were calculated followed by meta-analyses. Result: Ten studies met the inclusion criteria and a total of 334 patients were included for further analysis. Clinically significant parameters associated with obesity and metabolic syndrome were explored and FMT was identified significantly and negatively associated with most indices of abdominal adiposity including caloric intake, fasting glucose, HOMA-IR, systolic blood pressure, diastolic blood pressure, total cholesterol, HDL, LDL, triglycerides and CRP, Obesity parameters including fasting glucose and acetic acid were increased following FMT. Conclusion: FMT is more advantageous for obese patients with elevated blood pressure, disordered glucose and insulin metabolism, and elevated blood lipids. The study of metabolic factors in obese patients will be our starting point in the future.
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| 6. |
- Al Kharusi, S., et al.
(författare)
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SNEWS 2.0 : a next-generation supernova early warning system for multi-messenger astronomy
- 2021
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Ingår i: New Journal of Physics. - : IOP Publishing. - 1367-2630. ; 23:3
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Forskningsöversikt (refereegranskat)abstract
- The next core-collapse supernova in the Milky Way or its satellites will represent a once-in-a-generation opportunity to obtain detailed information about the explosion of a star and provide significant scientific insight for a variety of fields because of the extreme conditions found within. Supernovae in our galaxy are not only rare on a human timescale but also happen at unscheduled times, so it is crucial to be ready and use all available instruments to capture all possible information from the event. The first indication of a potential stellar explosion will be the arrival of a bright burst of neutrinos. Its observation by multiple detectors worldwide can provide an early warning for the subsequent electromagnetic fireworks, as well as signal to other detectors with significant backgrounds so they can store their recent data. The supernova early warning system (SNEWS) has been operating as a simple coincidence between neutrino experiments in automated mode since 2005. In the current era of multi-messenger astronomy there are new opportunities for SNEWS to optimize sensitivity to science from the next galactic supernova beyond the simple early alert. This document is the product of a workshop in June 2019 towards design of SNEWS 2.0, an upgraded SNEWS with enhanced capabilities exploiting the unique advantages of prompt neutrino detection to maximize the science gained from such a valuable event.
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| 7. |
- He, Minhui, et al.
(författare)
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Recent advances in dendroclimatology in China
- 2019
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Ingår i: Earth-Science Reviews. - : Elsevier BV. - 0012-8252 .- 1872-6828. ; 194, s. 521-535
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Forskningsöversikt (refereegranskat)abstract
- Considerable progress has been made in dendroclimatological research in China during the period 2000-2017, including a significant increase in the spatial coverage of tree-ring chronologies developed for paleoclimatic research. New tree-ring sampling sites have been established across the Tibetan Plateau, as well as the north-eastern and sub-tropical eastern parts of China. Most of the studies use coniferous trees, although different plant functional types (e.g., broadleaf species and shrubs) have also been increasingly investigated. Tree-ring chronologies longer than 600 years, however, are mostly found on the Tibetan Plateau, with the longest one extending back to 2637 BCE (before Common Era). Most tree-ring records in the eastern parts of China are < 400 years long. Tree-ring width is the most commonly studied parameter, although stable isotope ratios and wood density data have also been obtained for specific sites. Stable oxygen isotope data frequently shares a common hydroclimate signal, whereas the climate or environmental signals remain inconsistent for the few available stable carbon isotope records. In general, tree-ring width-based temperature reconstructions originate from higher elevation sites (i.e., treeline) compared to hydroclimate reconstructions. Precipitation or drought reconstructions are mainly obtained from regions with an annual precipitation of < 800 mm. Most of the tree-ring reconstructions are based on individual site or local-scale chronologies, although a limited number of regional-scale and field reconstructions have been produced. The most prominent identified characteristics of the recent advances in dendroclimatological research for China have manifested in aspects such as an expanded network of sampling sites, improved climate reconstruction methodology, and improved uncertainty estimations in the latter. Furthermore, the traditional statistical-based tree growth climate relationships have been supplemented by monitoring and modeling approaches. Based on the progress from 2000 to 2017, and on the research potential of the country in this field, we expect additional widening of the dendroclimatological investigations in China during the coming years.
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| 8. |
- Wang, Faming, et al.
(författare)
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Coastal blue carbon in China as a nature-based solution toward carbon neutrality
- 2023
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Ingår i: INNOVATION. - 2666-6758. ; 4:5
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Forskningsöversikt (refereegranskat)abstract
- To achieve the Paris Agreement, China pledged to become "Carbon Neutral" by the 2060s. In addition to massive decarbonization, this would require significant changes in ecosystems toward negative CO2 emissions. The ability of coastal blue carbon ecosystems (BCEs), including mangrove, salt marsh, and seagrass meadows, to sequester large amounts of CO2 makes their conservation and restoration an important "nature-based solution (NbS)" for climate adaptation and mitigation. In this review, we examine how BCEs in China can contribute to climate mitigation. On the national scale, the BCEs in China store up to 118 Tg C across a total area of 1,440,377 ha, including over 75% as unvegetated tidal flats. The annual sedimental C burial of these BCEs reaches up to 2.06 Tg C year(-1) , of which most occurs in salt marshes and tidal flats. The lateral C flux of mangroves and salt marshes contributes to 1.17 Tg C year(-1) along the Chinese coastline. Conservation and restoration of BCEs benefit climate change mitigation and provide other ecological services with a value of $32,000 ha(-1) year(-1). The potential practices and technologies that can be implemented in China to improve BCE C sequestration, including their constraints and feasibility, are also outlined. Future directions are suggested to improve blue carbon estimates on aerial extent, carbon stocks, sequestration, and mitigation potential. Restoring and preserving BCEs would be a cost-effective step to achieve Carbon Neutral by 2060 in China despite various barriers that should be removed.
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| 9. |
- Ye, Yin, et al.
(författare)
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Removal and recovery of aqueous U(VI) by heterogeneous photocatalysis: Progress and challenges
- 2022
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Ingår i: Chemical Engineering Journal. - : Elsevier BV. - 1385-8947. ; 450
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Forskningsöversikt (refereegranskat)abstract
- With the rapidly expanding implementations of nuclear power technology, the contamination of the aquatic environment by uranium is a rising environmental problem. Photocatalytic reduction of hexavalent uranium (U(VI)) is a plausible solution to the aqueous uranium contamination, which has generated increasing research interest in the recent decade. Therefore, a systematic assessment highlighting the important direction for future studies is in need. We herein present a critical review to address the following two aspects: (1) the progress and current understandings of photocatalytic U(VI) removal technology, including various applied catalysts, current understanding of the kinetics and mechanisms, the effects of key operation parameters, and the effects of co-existing water constituents; (2) key knowledge gaps that need future research efforts in this field.
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