| 1. |
- Zhang, X., et al.
(författare)
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Greater mineral and aggregate protection for organic carbon in the soil amended by weathered coal than by biochar : Based on a 3-year field experiment
- 2023
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Ingår i: Geoderma. - : Elsevier B.V.. - 0016-7061 .- 1872-6259. ; 438
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Tidskriftsartikel (refereegranskat)abstract
- Soil carbon pool stability plays an important role in reaching carbon neutrality and mitigating global warming. Applying soil amendments is a practical strategy in agricultural production to improve soil environment. Weathered coal (WC) is an organic amendment that can be used to improve soil quality. However, the effects of WC application on soil organic carbon pool stability, and its differences from the effects of biochar (BC, a common amendment) application remains unclear. In this study, BC was selected as a comparison to further evaluate the potential of WC based on a 3-year field experiment, in which WC and BC were individually applied into a loamy clay soil at 0%, 1%, and 3% (w/w) rates. Soil organic carbon and its fractions (including particulate organic carbon and mineral-bound organic carbon), soil aggregate fractions and its stability, and the organic carbon content in aggregates were examined. The results showed that both WC and BC significantly increased soil total organic carbon, particulate and mineral-bound organic carbon (P < 0.05). The mineral-bound organic carbon content in WC treatment was significantly higher than that in BC treatment (by 32% under the 3% rate) (P < 0.05), whereas, there were no significant differences in soil total organic carbon content. Both WC and BC increased the soil organic carbon content in all aggregate fractions. While only the WC improved the soil aggregate stability, and which was 15% (under 1% rate) and 28% (under 3% rate) higher in WC treatments than in BC treatments (P < 0.05). The proportion of mineral-bound organic carbon to soil total organic carbon content and the soil aggregate stability were obviously related the soil C/N, and the WC treatments had a higher proportion of mineral-bound organic carbon and soil aggregate stability than BC treatments under the same soil C/N. The results indicated that the application of WC may be more effective than BC in increasing mineral and aggregate protection for soil organic carbon and thus improving soil carbon pool stability. Additionally, the purchase cost of WC was clearly lower than that of BC. Combined with the low cost and the benefits in soil structure and carbon pool stability, the application of WC appeared to have advantages over BC. Our findings provide robust evidence that WC is more effective than BC in improving soil carbon pool stability.
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| 2. |
- Wang, K., et al.
(författare)
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Amended soils with weathered coal exhibited greater resistance to aggregate breakdown than those with biochar : From the viewpoint of soil internal forces
- 2024
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Ingår i: Soil & Tillage Research. - : Elsevier B.V.. - 0167-1987 .- 1879-3444. ; 244
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Tidskriftsartikel (refereegranskat)abstract
- Soil erosion is the first threat to soil functions. Reducing the soil aggregate breakdown strength is a key step to improve the soil's ability to resist rainfall splash erosion. Soil internal forces have been found to be the initial and important forces driving aggregate turnover. The application of exogenous organic materials can effectively improve soil aggregate stability and the resistance to rainfall erosion of agricultural soils. However, from the perspective of soil internal forces, information about the reduction effects of the exogenous organic materials application on soil aggregate breakdown is scarce, especially in comparing the effects of different materials. In this study, weathered coal and biochar were individually applied to loamy clay soil at rates of 0 %, 1 %, 2 %, and 3 % (w/w). Soil internal forces, aggregate breakdown strength, and splash erosion rate of different amended soils were then examined after four years. The results showed that compared with unamended soils (0 %), both weathered coal and biochar applications clearly increased the van der Waals attractive pressure and thus decreased the positive net pressure between soil particles. Additionally, these materials reduced soil aggregate breakdown strength and splash erosion rate. The application effects of the two materials were increased with their application rates. Under a lower electrolyte concentration in soil solution (0.0001 mol L−1), the aggregate breakdown strength in the soils amended with weathered coal was lower than that with biochar by 9.6 %, 23.2 %, and 17.7 % (when the diameter of broken aggregate was < 10 μm) and by 10.3 %, 20.8 %, and 17.5 % (when the diameter of broken aggregate was < 20 μm) at the 1 %, 2 %, and 3 % application rates, respectively (P < 0.05). Additionally, soils amended with weathered coal exhibited lower splash erosion rates compared to those amended with biochar, particularly at the higher application rate of 3 %. From the viewpoint of soil internal forces, weathered coal appears to be a suitable exogenous organic material for improving soil aggregate stability and anti-erosion ability during rainfall events. Our findings provide valuable insights into utilizing exogenous materials to improve soil resistance to rainfall splash erosion, assisting agricultural soil management in areas frequently affected by rainfall erosion.
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| 3. |
- Mascher, Martin, et al.
(författare)
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A chromosome conformation capture ordered sequence of the barley genome
- 2017
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 544:7651, s. 427-433
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Tidskriftsartikel (refereegranskat)abstract
- Cereal grasses of the Triticeae tribe have been the major food source in temperate regions since the dawn of agriculture. Their large genomes are characterized by a high content of repetitive elements and large pericentromeric regions that are virtually devoid of meiotic recombination. Here we present a high-quality reference genome assembly for barley (Hordeum vulgare L.). We use chromosome conformation capture mapping to derive the linear order of sequences across the pericentromeric space and to investigate the spatial organization of chromatin in the nucleus at megabase resolution. The composition of genes and repetitive elements differs between distal and proximal regions. Gene family analyses reveal lineage-specific duplications of genes involved in the transport of nutrients to developing seeds and the mobilization of carbohydrates in grains. We demonstrate the importance of the barley reference sequence for breeding by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion.
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| 4. |
- Zeng, Z. K., et al.
(författare)
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A new Buttiauxella phytase continuously hydrolyzes phytate and improves amino acid digestibility and mineral balance in growing pigs fed phosphorous-deficient diet
- 2016
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Ingår i: Journal of Animal Science. - : Oxford University Press (OUP). - 0021-8812 .- 1525-3163. ; 94:2, s. 629-638
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Tidskriftsartikel (refereegranskat)abstract
- Ten ileal T-cannulated pigs (19.26 ± 1.06 kg) were used to evaluate the effects of a novel Buttiauxella phytase on apparent ileal digestibility (AID) of AA and apparent total tract digestibility (ATTD) and hindgut disappearance of DM, GE, CP, crude fiber, NDF, and ADF as well as minerals balance. Pigs were fed in a duplicated 5 × 4 incomplete Latin square design (5 diets with 4 periods). Each period consisted of a 5-d adjustment period followed by a 3-d total collection of feces and urine and then a 2-d collection of ileal digesta. The 5 diets included a P-deficient basal diet (0.43% Ca and 0.38% total P) that was supplemented with 0 (negative control [NC]), 500, 1,000, or 20,000 phytase units (FTU)/kg phytase and a positive control (PC) diet that was P adequate (0.64% Ca and 0.52% total P). The addition of phytase to the NC diet improved (P < 0.05) AID of phytate from 11.1 to 62.8, 70.6, and 90.5% at the inclusion rates of 500, 1,000, and 20,000 FTU/kg, respectively. In general, phytase supplementation at a dose of 20,000 FTU/kg further increased (P < 0.05) AID of Ca, total P, and phytate and reduced (P < 0.05) the ileal phytate concentration compared with diets with 500 or 1,000 FTU/kg phytase. Pigs fed the diet with 20,000 FTU/kg phytase but not diets with 500 and 1,000 FTU/kg phytase showed improved (P < 0.05) ATTD of CP and AID of DM, GE, CP, Leu, Lys, Thr, Val, Asp, and Ser compared with pigs fed the PC or NC diet. However, hindgut disappearance of crude fiber and NDF (P < 0.05) were reduced in pigs fed the diet with 20,000 FTU/kg phytase compared with pigs fed the PC or NC diet. Pigs fed diets with 500 or 1,000 FTU/ kg phytase had greater ATTD and retention of Ca and P than pigs fed the NC diet but less compared with pigs fed the diet with 20,000 FTU/kg phytase. Supplementation of 20,000 FTU/kg phytase to the NC diet improved (P < 0.05) digestibility of Na, Mn, and Zn as well as retention (%) of Zn. Increasing phytase supplementation doses from 0 to 1,000 FTU/kg linearly improved (P < 0.05) retention of Mg; meanwhile, digestibility of Mg and Mn and AID of Thr showed a linear increase trend (P = 0.084). In conclusion, supplementation of the novel Buttiauxella phytase at doses up to 20,000 FTU/kg hydrolyzed most of the phytate (90%) and consequently further improved mineral and protein utilization.
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| 5. |
- Zhong, Ziqian, 1995, et al.
(författare)
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Disentangling the effects of vapor pressure deficit on northern terrestrial vegetation productivity
- 2023
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Ingår i: Science Advances. - 2375-2548. ; 9:32
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Tidskriftsartikel (refereegranskat)abstract
- The impact of atmospheric vapor pressure deficit (VPD) on plant photosynthesis has long been acknowledged, but large interactions with air temperature (T) and soil moisture (SM) still hinder a complete understanding of the influence of VPD on vegetation production across various climate zones. Here, we found a diverging response of productivity to VPD in the Northern Hemisphere by excluding interactive effects of VPD with T and SM. The interactions between VPD and T/SM not only offset the potential positive impact of warming on vegetation productivity but also amplifies the negative effect of soil drying. Notably, for high-latitude ecosystems, there occurs a pronounced shift in vegetation productivity's response to VPD during the growing season when VPD surpasses a threshold of 3.5 to 4.0 hectopascals. These results yield previously unknown insights into the role of VPD in terrestrial ecosystems and enhance our comprehension of the terrestrial carbon cycle's response to global warming.
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| 6. |
- Androsiuk, P., et al.
(författare)
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Genetic status of Norway spruce (Picea abies) breeding populations for northern Sweden
- 2013
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Ingår i: Silvae Genetica. - : J.D. Sauerlaender's Verlag. - 0037-5349. ; 62:3, s. 127-136
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Tidskriftsartikel (refereegranskat)abstract
- Efficient use of any breeding resources requires a good understanding of the genetic value of the founder breeding materials for predicting the gain and diversity in future generations. This study evaluates the distribution of genetic variation and level of relatedness among and within nine breeding populations of Norway spruce for Northern Sweden using nuclear microsatellite markers. A sample set of 456 individuals selected from 140 stands were genotyped with, 15 SSR loci. Over all loci each individual was identified with unique multilocus genotype. High genetic diversity (average H-e=0.820) and low population differentiation (F-ST = 0.0087) characterized this material. Although low in F-ST, the two northernmost populations were clustered as a distinct group diverged from the central populations. The population differentiation pattern corresponds well with the post glacial migration history of Norway spruce and the current gene flow and human activity in the region. The average inbreeding coefficient was 0.084 after removal loci with high frequency of null alleles. The estimated relatedness of the trees gathered in the breeding populations was very low (average kinship coefficient 0.0077) and not structured. The high genetic variation and low and not structured relatedness between individuals found in the breeding populations confirm that the Norway spruce breeding stock for northern Sweden represent valuable genetic resources for both long-term breeding and conservation programs.
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| 7. |
- Groenen, M. A., et al.
(författare)
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Analyses of pig genomes provide insight into porcine demography and evolution
- 2012
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 491:7424, s. 393-398
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Tidskriftsartikel (refereegranskat)abstract
- For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes of domestic pigs. Here we present the assembly and analysis of the genome sequence of a female domestic Duroc pig (Sus scrofa) and a comparison with the genomes of wild and domestic pigs from Europe and Asia. Wild pigs emerged in South East Asia and subsequently spread across Eurasia. Our results reveal a deep phylogenetic split between European and Asian wild boars approximately 1 million years ago, and a selective sweep analysis indicates selection on genes involved in RNA processing and regulation. Genes associated with immune response and olfaction exhibit fast evolution. Pigs have the largest repertoire of functional olfactory receptor genes, reflecting the importance of smell in this scavenging animal. The pig genome sequence provides an important resource for further improvements of this important livestock species, and our identification of many putative disease-causing variants extends the potential of the pig as a biomedical model.
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| 8. |
- Kang, W., et al.
(författare)
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Chemical and sensory impacts of Accentuated Cut Edges (ACE) grape must polyphenol extraction technique on shiraz wines
- 2020
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Ingår i: Foods. - : MDPI AG. - 2304-8158. ; 9:8
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Tidskriftsartikel (refereegranskat)abstract
- Accentuated Cut Edges (ACE) is a recently developed grape must extraction technique, which mechanically breaks grape skins into small fragments but maintains seed integrity. This study was the first to elucidate the effect of ACE on Shiraz wine's basic chemical composition, colour, phenolic compounds, polysaccharides and sensory profiles. A further aim was to investigate any potential influence provided by ACE on the pre-fermentation water addition to must. ACE did not visually affect Shiraz wine colour, but significantly enhanced the concentration of tannin and total phenolics. Wine polysaccharide concentration was mainly increased in response to the maceration time rather than the ACE technique. ACE appeared to increase the earthy/dusty flavour, possibly due to the different precursors released by the greater skin breakage. The pre-fermentation addition of the water diluted the wine aromas, flavours and astringency profiles. However, combining the ACE technique with water addition enhanced the wine textural quality by increasing the intensities of the crucial astringent wine quality sub-qualities, adhesive and graininess. Furthermore, insights into the chemical factors influencing the astringency sensations were provided in this study. This research indicates that wine producers may use ACE with pre-fermentation water dilution to reduce the wine alcohol level but maintain important textural components. © 2020 by the authors.
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| 9. |
- Li, Xiaona, et al.
(författare)
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Biochar increases soil microbial biomass but has variable effects on microbial diversity : A meta-analysis
- 2020
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Ingår i: Science of the Total Environment. - : Elsevier BV. - 0048-9697. ; 749
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Tidskriftsartikel (refereegranskat)abstract
- Biochar has been extensively studied as a soil amendment for carbon sequestration and for improving soil quality; however, a systematic understanding of the responses of soil microbial biomass and diversity to biochar addition is lacking. Here, a meta-analysis of 999 paired data points from 194 studies shows that biochar increases microbial biomass but has variable effects on microbial diversity. Generally, the effects of biochar on microbial biomass are dependent on biochar properties, while that on microbial diversity is dependent on soil properties. The application of biochar, particularly that produced under low temperature and from nutrient-rich feedstocks, could better increase soil microbial biomass (based on phospholipid fatty acid analysis (MBCPLFA)) and diversity. The increases of total microbial biomass with biochar addition are greater in the field than in laboratory studies, in sandy than in clay soils, and when measured by fumigation-extraction (MBCFE) than by MBCPLFA. The bacterial biomass only significantly increases in laboratory studies and fungal biomass only in soils with pH ≤ 7.5 and soil organic carbon ≤30 g kg−1. The increases in total microbial diversity with biochar addition were greater in acidic and sandy soils with low soil organic carbon content and in laboratory incubation studies. In addition, long-term and low-rate addition of biochar always increases microbial diversity. To better guide the use of biochar as a soil amendment, we suggest that establishing long-term and field studies, using a standard method for measuring microbial communities, on different soil types should be our emphasis in future research.
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| 10. |
- Tan, Biyue, 1986-
(författare)
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Genomic selection and genome-wide association studies to dissect quantitative traits in forest trees
- 2018
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The convergence of quantitative genetics of complex traits with genomic technologies is quickly becoming an innovative approach to explore fundamental genetic questions and also have practical consequences for implementations in tree breeding. In this thesis, I used genomic selection and genome-wide association studies (GWAS) to dissect the genetic basis of quantitative traits, i.e. growth, phenology and wood property traits. I also assessed the importance of dominance and epistatic effects in hybrid Eucalyptus. Both dominance and epistasis are important in hybrids, as they are the likely contributing to the genetic basis of heterosis. To successfully implement genomic selection models, several important factors have to be considered. I found that for a good model establishment, both the size and composition of the training population, as well as the number of SNPs to be important considered. Based on the optimal models, additive, dominance and epistasis genetic effects of growth and wood traits have been estimated to evaluate genetic parameters and how these influence the prediction accuracy, which can be used in selecting elite breeding individuals or clones. I also addressed the advantage of genotyping-based analyses by showing that we could accurately correct pedigree information errors. More importantly, genotyping-based analyses capture both Mendelian segregation variation within full-sib families and cryptic genetic links through unknown common ancestors, which are not available from traditional pedigree data. GWAS were used to analyse growth and phenology related traits. Using a single-trait GWAS method, we identified a region strongly associated with the timing of bud set in Populus tremula, a trait with high heritability. For the growth related traits, we found that a multi-traits GWAS approach was more powerful than single-trait analyses as it identified more associated SNPs in hybrid Eucalyptus. Moreover, many more novel associated SNPs were identified from considering over-dominance effects in the GWAS analyses. After annotating the associated SNPs I show that these functional candidate genes were related to growth and responding to abiotic and biotic stress. In summary, the results of genomic selection and GWAS provided a deeper understanding of the genetic backgrounds of quantitative traits in forest trees.
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