| 1. |
- Chasman, Daniel I., et al.
(författare)
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Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function
- 2012
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Ingår i: Human Molecular Genetics. - 0964-6906. ; 21:24, s. 5329-5343
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Tidskriftsartikel (refereegranskat)abstract
- In conducting genome-wide association studies (GWAS), analytical approaches leveraging biological information may further understanding of the pathophysiology of clinical traits. To discover novel associations with estimated glomerular filtration rate (eGFR), a measure of kidney function, we developed a strategy for integrating prior biological knowledge into the existing GWAS data for eGFR from the CKDGen Consortium. Our strategy focuses on single nucleotide polymorphism (SNPs) in genes that are connected by functional evidence, determined by literature mining and gene ontology (GO) hierarchies, to genes near previously validated eGFR associations. It then requires association thresholds consistent with multiple testing, and finally evaluates novel candidates by independent replication. Among the samples of European ancestry, we identified a genome-wide significant SNP in FBXL20 (P 5.6 10(9)) in meta-analysis of all available data, and additional SNPs at the INHBC, LRP2, PLEKHA1, SLC3A2 and SLC7A6 genes meeting multiple-testing corrected significance for replication and overall P-values of 4.5 10(4)2.2 10(7). Neither the novel PLEKHA1 nor FBXL20 associations, both further supported by association with eGFR among African Americans and with transcript abundance, would have been implicated by eGFR candidate gene approaches. LRP2, encoding the megalin receptor, was identified through connection with the previously known eGFR gene DAB2 and extends understanding of the megalin system in kidney function. These findings highlight integration of existing genome-wide association data with independent biological knowledge to uncover novel candidate eGFR associations, including candidates lacking known connections to kidney-specific pathways. The strategy may also be applicable to other clinical phenotypes, although more testing will be needed to assess its potential for discovery in general.
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| 2. |
- Liu, Jin-ming, et al.
(författare)
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Mid-term effects of lung volume reduction surgery on pulmonary function in patients with chronic obstructive pulmonary disease
- 2007
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Ingår i: Chinese Medical Journal. - Chinese Medical Association. - 0366-6999. ; 120:8, s. 658-662
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Tidskriftsartikel (refereegranskat)abstract
- Background Now lung volume reduction surgery (LVRS) has become one of the most effective methods for the management of some cases of severe chronic obstructive pulmonary disease (COPD). We evaluated the mid-term effects of LVRS on pulmonary function in patients with severe COPD. Methods Ten male patients with severe COPD aged 38-70 years underwent LVRS and their pulmonary function was assessed before, 3 months and 3 years after surgery. The spirometric and gas exchange parameters included residual volume, total lung capacity, inspiratory capacity, forced vital capacity, forced expiratory volume in one second, diffusion capacity for CO, and arterial blood gas. A 6-minute walk distance (6MWD) test was performed. Results As to preoperative assessment, most spirometric parameters and 6MWD were significantly improved after 3 months and slightly 3 years after LVRS. Gas exchange parameters were significantly improved 3 months after surgery, but returned to the preoperative levels after 3 years. Conclusions LVRS may significantly improve pulmonary function in patients with severe COPD indicating for LVRS. Mid-term pulmonary function 3 years after surgery can be decreased to the level at 3 months after surgery. Three years after LVRS, lung volume and pulmonary ventilation function can be significantly improved, but the improvement in gas exchange function was not significant.
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| 3. |
- Liu, Ming, et al.
(författare)
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A High-End Reconfigurable Computation Platform for Nuclear and Particle Physics Experiments
- 2011
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Ingår i: Computing in science & engineering (Print). - 1521-9615. ; 13:2, s. 52-63
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Tidskriftsartikel (refereegranskat)abstract
- A high-performance computation platform based on field-programmable gate arrays targets nuclear and particle physics experiment applications. The system can be constructed or scaled into a supercomputer-equivalent size for detector data processing by inserting compute nodes into advanced telecommunications computing architecture (ATCA) crates. Among the case study results are that one ATCA crate can provide a computation capability equivalent to hundreds of commodity PCs for Hades online particle track reconstruction and Cherenkov ring recognition.
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| 4. |
- Liu, Ming, et al.
(författare)
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ATCA-based Computation Platform for Data Acquisition and Triggering in Particle Physics Experiments
- 2008
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Ingår i: 2008 INTERNATIONAL CONFERENCE ON FIELD PROGRAMMABLE AND LOGIC APPLICATIONS, VOLS 1 AND 2. ; s. 287-292
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Konferensbidrag (refereegranskat)abstract
- An ATCA-based computation platform for data acquisition and trigger applications in nuclear and particle physics experiments has been developed. Each Compute Node (CN) which appears as a Field Replaceable Unit (FRU) in an ATCA shelf, features 5 Xilinx Virtex-4 FX60 FPGAs and up to 10 GBytes DDR2 memory. Connectivity is provided with 8 optical links and 5 Gigabit Ethernet ports, which are mounted on each board to receive data from detectors and forward results to outer shelves or PC farms with attached mass storage. Fast point-to-point on-board interconnections between FPGAs as well as the full-mesh shelf backplane provide flexibility and high bandwidth to partition algorithms and correlate results among them. The system represents a highly reconfigurable and scalable solution for multiple applications.
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| 5. |
- Liu, Ming, et al.
(författare)
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Trigger algorithm development on FPGA-based Compute Nodes
- 2009
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Ingår i: 2009 16th IEEE-NPSS Real Time Conference. - New York : IEEE. - 978-1-4244-5796-0 ; s. 478-484
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Konferensbidrag (refereegranskat)abstract
- Based on the ATCA computation architecture and Compute Nodes (CN), investigation and implementation work has been being executed for HADES and PANDA trigger algorithms. We present our designs for HADES track reconstruction processing, Cherenkov ring recognition, Time-Of-Flight processing, electromagnetic shower recognition.. and the PANDA straw tube tracking algorithm. They will appear as co-processors in the uniform system design to undertake the detector-specific computing. The algorithm principles will be explained and hardware designs are described in the paper. The current progress reveals the feasibility to implement these algorithms on FPGAs. Also experimental results demonstrate the performance speedup when compared to alternative software solutions, as well as the potential capability of high-speed parallel/pipelined processing in Data Acquisition and Trigger systems.
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| 6. |
- Pattaro, Cristian, et al.
(författare)
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Genome-Wide Association and Functional Follow-Up Reveals New Loci for Kidney Function
- 2012
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Ingår i: PLoS Genetics. - 1553-7390. ; 8:3, s. e1002584
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Tidskriftsartikel (refereegranskat)abstract
- Chronic kidney disease (CKD) is an important public health problem with a genetic component. We performed genomewide association studies in up to 130,600 European ancestry participants overall, and stratified for key CKD risk factors. We uncovered 6 new loci in association with estimated glomerular filtration rate (eGFR), the primary clinical measure of CKD, in or near MPPED2, DDX1, SLC47A1, CDK12, CASP9, and INO80. Morpholino knockdown of mpped2 and casp9 in zebrafish embryos revealed podocyte and tubular abnormalities with altered dextran clearance, suggesting a role for these genes in renal function. By providing new insights into genes that regulate renal function, these results could further our understanding of the pathogenesis of CKD.
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| 7. |
- Wang, Qiang, et al.
(författare)
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Hardware/Software Co-design of an ATCA-based Computation Platform for Data Acquisition and Triggering
- 2009
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Ingår i: 16th IEEE NPSS Real Time Conference. - 978-1-4244-5796-0 ; s. 485-489
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Konferensbidrag (refereegranskat)abstract
- An ATCA-based computation platform for data acquisition and trigger(TDAQ) applications has been developed for multiple future projects such its PANDA. HADES, and BESIII. Each Compute Node (CN) appears as one (if the fourteen Field Replaceable Units (FRU) in an ATCA shelf, which in total features a high performance of 1890 Clips inter-FPGA on-board channels, 1456 Gbps inter-board backplane connections, 728 Gbps full-duplex optical links, 70 Gbps Ethernet. 140 GBytes DDR2 SDRAM. and all computing resources of 70 Xilinx Virtex-4 FX60 FPGAs. Corresponding to (the system architecture, a hardware/software co-design approach is proposed to ease and accelerate the development for different experiments. In the uniform system design. application-specific computation is to be implemented as customized hardware co-processors, while the embedded PowerPC processor takes charge of flexible slow controls and transmission protocol processing.
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| 8. |
- Ehret, Georg B., et al.
(författare)
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Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk
- 2011
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Ingår i: Nature. - Nature Publishing Group. - 0028-0836. ; 478:7367, s. 103-109
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Tidskriftsartikel (refereegranskat)abstract
- Blood pressure is a heritable trait(1) influenced by several biological pathways and responsive to environmental stimuli. Over one billion people worldwide have hypertension (>= 140 mm Hg systolic blood pressure or >= 90 mm Hg diastolic blood pressure)(2). Even small increments in blood pressure are associated with an increased risk of cardiovascular events(3). This genome-wide association study of systolic and diastolic blood pressure, which used a multi-stage design in 200,000 individuals of European descent, identified sixteen novel loci: six of these loci contain genes previously known or suspected to regulate blood pressure (GUCY1A3-GUCY1B3, NPR3-C5orf23, ADM, FURIN-FES, GOSR2, GNAS-EDN3); the other ten provide new clues to blood pressure physiology. A genetic risk score based on 29 genome-wide significant variants was associated with hypertension, left ventricular wall thickness, stroke and coronary artery disease, but not kidney disease or kidney function. We also observed associations with blood pressure in East Asian, South Asian and African ancestry individuals. Our findings provide new insights into the genetics and biology of blood pressure, and suggest potential novel therapeutic pathways for cardiovascular disease prevention.
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| 9. |
- Liu, Jin-Ming, et al.
(författare)
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Alveolar albumin leakage during large tidal volume ventilation and surfactant dysfunction
- 2001
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Ingår i: Clinical physiology (Oxford, England). - Blackwell Science Ltd. - 0144-5979. ; 21:4, s. 421-427
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Tidskriftsartikel (refereegranskat)abstract
- Detergent given as an aerosol and large tidal volume ventilation (LTVV) have been observed, by us, to promote lung injury by an additive effect on alveolocapillary barrier function. The surfactant system may be further damaged if protein leakage occurs into the alveoli. The aim was to study the effect of detergent and LTVV on the alveolar leakage of albumin and also the effect of detergent on surface activity of lung washings and lung tissue extracts. Technetium-99m-labelled human serum albumin was given intravenously. The alveolar leakage of albumin was measured after perturbing the surfactant system with the detergent dioctyl sodium sulfosuccinate either singly or in combination with LTVV. Four groups of rabbits were studied after 3 h of experimental ventilation. Surface tension measurements of tissue extracts, lung mechanics and gas exchange did not show any differences between groups. Wet lung weight and albumin leakage were significantly increased in the two groups subjected to LTVV compared with groups given normal tidal volume ventilation. Low doses of detergent did not affect surface activity of lung tissue extracts or alveolar leakage of albumin. LTVV increased alveolar leakage of albumin and produced oedema. No additive effect was seen when detergent and LTVV were combined.
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| 10. |
- Wu, Jing-Fang, et al.
(författare)
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Extracranial and intracranial complications of otitis media : 22-year clinical experience and analysis
- 2012
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Ingår i: Acta Oto-Laryngologica. - 0001-6489. ; 132:3, s. 261-265
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Tidskriftsartikel (refereegranskat)abstract
- Conclusion: The morbidity of the complications has had a decreased tendency in recent decades, but the category of the complications was rather diverse. There are still many serious complications that require our attention. Surgery is still the most important treatment option.Objective: To investigate otogenic extracranial and intracranial complications in patients with acute and chronic otitis media.Methods: A retrospective study investigated 285 patients with extracranial and intracranial complications among the 2346 inpatients with acute or chronic otitis media with or without cholesteatoma admitted to the Department of Otolaryngology, AnHui Medical University Hospital between 1987 and 2008.Results: In the 285 patients with cranial complications, 253 had a single complication, 29 had two complications, and 3 had more than two complications. Intracranial complications included meningitis (16 cases), brain abscess (42 cases), sigmoid sinus involvement (29 cases), extradural abscess (8 cases), subdural abscess (1 case), and hydrocephalus (2 cases). Extracranial complications included labyrinthitis (90 cases), mastoid abscess (79 cases), facial paralysis (47 cases), Bezold abscess (5 cases), and apicitis pyramidalis (1 case). In all, 267 patients were cured or improved without recurrence. Five patients died from complications, of whom four died of cerebral hernia and one died of multiple abscesses.
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