| 1. |
- Dylus, D.V., et al.
(author)
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Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks
- 2016
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In: EvoDevo. - : Springer Science and Business Media LLC. - 2041-9139. ; 7:1
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Journal article (peer-reviewed)abstract
- © 2016 Dylus et al. Background: The evolutionary mechanisms involved in shaping complex gene regulatory networks (GRN) that encode for morphologically similar structures in distantly related animals remain elusive. In this context, echinoderm larval skeletons found in brittle stars and sea urchins provide an ideal system. Here, we characterize for the first time the development of the larval skeleton in the ophiuroid Amphiura filiformis and compare it systematically with its counterpart in sea urchin. Results: We show that ophiuroids and euechinoids, that split at least 480 Million years ago (Mya), have remarkable similarities in tempo and mode of skeletal development. Despite morphological and ontological similarities, our high-resolution study of the dynamics of genetic regulatory states in A. filiformis highlights numerous differences in the architecture of their underlying GRNs. Importantly, the A.filiformis pplx, the closest gene to the sea urchin double negative gate (DNG) repressor pmar1, fails to drive the skeletogenic program in sea urchin, showing important evolutionary differences in protein function. hesC, the second repressor of the DNG, is co-expressed with most of the genes that are repressed in sea urchin, indicating the absence of direct repression of tbr, ets1/2, and delta in A. filiformis. Furthermore, the absence of expression in later stages of brittle star skeleton development of key regulatory genes, such as foxb and dri, shows significantly different regulatory states. Conclusion: Our data fill up an important gap in the picture of larval mesoderm in echinoderms and allows us to explore the evolutionary implications relative to the recently established phylogeny of echinoderm classes. In light of recent studies on other echinoderms, our data highlight a high evolutionary plasticity of the same nodes throughout evolution of echinoderm skeletogenesis. Finally, gene duplication, protein function diversification, and cis-regulatory element evolution all contributed to shape the regulatory program for larval skeletogenesis in different branches of echinoderms.
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| 2. |
- Georgian, Samuel E., et al.
(author)
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Biogeographic variability in the physiological response of the cold-water coral Lophelia pertusa to ocean acidification
- 2016
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In: Marine Ecology. - : Wiley. - 0173-9565 .- 1439-0485. ; 37:6
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Journal article (peer-reviewed)abstract
- While ocean acidification is a global issue, the severity of ecosystem effects is likely to vary considerably at regional scales. The lack of understanding of how biogeographically separated populations will respond to acidification hampers our ability to predict the future of vital ecosystems. Cold-water corals are important drivers of biodiversity in ocean basins across the world and are considered one of the most vulnerable ecosystems to ocean acidification. We tested the short-term physiological response of the cold-water coral Lophelia pertusa to three pH treatments (pH = 7.9, 7.75 and 7.6) for Gulf of Mexico (USA) and Tisler Reef (Norway) populations, and found that reductions in seawater pH elicited contrasting responses. Gulf of Mexico corals exhibited reductions in net calcification, respiration and prey capture rates with decreasing pH. In contrast, Tisler Reef corals showed only slight reductions in net calcification rates under decreased pH conditions while significantly elevating respiration and capture rates. These differences are likely the result of environmental differences (depth, pH, food supply) between the two regions, invoking the potential for local adaptation or acclimatization to alter their response to global change. However, it is also possible that variations in the methodology used in the experiments contributed to the observed differences. Regardless, these results provide insights into the resilience of L. pertusa to ocean acidification as well as the potential influence of regional differences on the viability of species in future oceans.
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| 3. |
- Perry, D, et al.
(author)
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Global environmental changes negatively impact temperate seagrass ecosystems
- 2019
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In: Ecosphere. - : Wiley. - 2150-8925. ; 10:12, s. 1-18
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Journal article (peer-reviewed)abstract
- The oceans are increasingly affected by multiple aspects of global change, with substantial impacts on ecosystem functioning and food-web dynamics. While the effects of single factors have been extensively studied, it has become increasingly evident that there is a need to unravel the complexities related to a multiple stressor environment. In a mesocosm experimental study, we exposed a simplified, multi-trophic seagrass ecosystem (composed of seagrass, two shrimp species, and two intermediate predatory fish species) to three global change factors consisting of simulated storm events (Storms), heat shocks (Heat), and ocean acidification (OA), and the combination of all three factors (All). The most striking result indicated that when all factors were combined, there was a negative influence at all trophic levels, while the treatments with individual factors revealed species-specific response patterns. It appeared, however, that single factors may drive the multi-stressor response. All single factors (i.e., Storms, Heat, and OA) had either negative, neutral, or positive effects on fish and shrimp, whereas no effect was recorded for any single stressor on seagrass plants. The findings demonstrate that when several global change factors appear simultaneously, they can have deleterious impacts on seagrass ecosystems, and that the nature of factors and food-web composition may determine the sensitivity level of the system. In a global change scenario, this may have serious and applicable implications for the future of temperate seagrass ecosystems.
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| 4. |
- Ramachandra, Rashmi, et al.
(author)
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A Potential Role for Chondroitin Sulfate/Dermatan Sulfate in Arm Regeneration in Amphiura filiformis.
- 2017
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In: Glycobiology. - : Oxford University Press (OUP). - 0959-6658 .- 1460-2423. ; 27:5, s. 438-449
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Journal article (peer-reviewed)abstract
- Glycosaminoglycans (GAGs), such as chondroitin sulfate (CS) and dermatan sulfate (DS) from various vertebrate and invertebrate sources are known to be involved in diverse cellular mechanisms during repair and regenerative processes. Recently, we have identified CS/DS as the major GAG in the brittlestar Amphiura filiformis, with high proportions of di- and tri-O-sulfated disaccharide units. As this echinoderm is known for its exceptional regeneration capacity, we aimed to explore the role of these GAG chains during A. filiformis arm regeneration. Analysis of CS/DS chains during the regeneration process revealed an increase in the proportion of the tri-O-sulfated disaccharides. Conversely, treatment of A. filiformis with sodium chlorate, a potent inhibitor of sulfation reactions in GAG biosynthesis, resulted in a significant reduction in arm growth rates with total inhibition at concentrations higher than 5 mM. Differentiation was less impacted by sodium chlorate exposure or even slightly increased at 1-2 mM. Based on the structural changes observed during arm regeneration we identified chondroitin synthase, chondroitin-4-O-sulfotransferase 2 and dermatan-4-O-sulfotransferase as candidate genes and sought to correlate their expression with the expression of the A. filiformis orthologue of bone morphogenetic factors, AfBMP2/4. Quantitative amplification by real-time PCR indicated increased expression of chondroitin synthase and chondroitin-4-O-sulfotransferase 2, with a corresponding increase in AfBMP2/4 during regeneration relative to nonregenerating controls. Our findings suggest that proper sulfation of GAGs is important for A. filiformis arm regeneration and that these molecules may participate in mechanisms controlling cell proliferation.
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| 5. |
- Arnberg, M., et al.
(author)
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Effects of oil and global environmental drivers on two keystone marine invertebrates
- 2018
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In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 8:1
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Journal article (peer-reviewed)abstract
- Ocean warming (OW) and acidification (OA) are key features of global change and are predicted to have negative consequences for marine species and ecosystems. At a smaller scale increasing oil and gas activities at northern high latitudes could lead to greater risk of petroleum pollution, potentially exacerbating the effects of such global stressors. However, knowledge of combined effects is limited. This study employed a scenario-based, collapsed design to investigate the impact of one local acute stressor (North Sea crude oil) and two chronic global drivers (pH for OA and temperature for OW), alone or in combination on aspects of the biology of larval stages of two key invertebrates: the northern shrimp (Pandalus borealis) and the green sea urchin (Strongylocentrotus droebachiensis). Both local and global drivers had negative effects on survival, development and growth of the larval stages. These effects were species- and stage-dependent. No statistical interactions were observed between local and global drivers and the combined effects of the two drivers were approximately equal to the sum of their separate effects. This study highlights the importance of adjusting regulation associated with oil spill prevention to maximize the resilience of marine organisms to predicted future global conditions. © 2018, The Author(s).
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| 6. |
- Bach, Lennart T, et al.
(author)
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Influence of Ocean Acidification on a Natural Winter-to-Summer Plankton Succession: First Insights from a Long-Term Mesocosm Study Draw Attention to Periods of Low Nutrient Concentrations
- 2016
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In: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 11:8
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Journal article (peer-reviewed)abstract
- Every year, the oceans absorb about 30% of anthropogenic carbon dioxide (CO2) leading to a re-equilibration of the marine carbonate system and decreasing seawater pH. Today, there is increasing awareness that these changes-summarized by the term ocean acidification (OA)-could differentially affect the competitive ability of marine organisms, thereby provoking a restructuring of marine ecosystems and biogeochemical element cycles. In winter 2013, we deployed ten pelagic mesocosms in the Gullmar Fjord at the Swedish west coast in order to study the effect of OA on plankton ecology and biogeochemistry under close to natural conditions. Five of the ten mesocosms were left unperturbed and served as controls (similar to 380 mu atm pCO(2)), whereas the others were enriched with CO2-saturated water to simulate realistic end-of-the-century carbonate chemistry conditions (mu 760 mu atm pCO(2)). We ran the experiment for 113 days which allowed us to study the influence of high CO2 on an entire winter-to-summer plankton succession and to investigate the potential of some plankton organisms for evolutionary adaptation to OA in their natural environment. This paper is the first in a PLOS collection and provides a detailed overview on the experimental design, important events, and the key complexities of such a "long-term mesocosm" approach. Furthermore, we analyzed whether simulated end-of-the-century carbonate chemistry conditions could lead to a significant restructuring of the plankton community in the course of the succession. At the level of detail analyzed in this overview paper we found that CO2-induced differences in plankton community composition were non-detectable during most of the succession except for a period where a phytoplankton bloom was fueled by remineralized nutrients. These results indicate: (1) Long-term studies with pelagic ecosystems are necessary to uncover OA-sensitive stages of succession. (2) Plankton communities fueled by regenerated nutrients may be more responsive to changing carbonate chemistry than those having access to high inorganic nutrient concentrations and may deserve particular attention in future studies.
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| 7. |
- Basse, W. C., et al.
(author)
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A sea urchin Na+K+2Cl- cotransporter is involved in the maintenance of calcification-relevant cytoplasmic cords in Strongylocentrotus droebachiensis larvae
- 2015
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In: Comparative Biochemistry and Physiology A. - : Elsevier BV. - 1095-6433. ; 187, s. 184-192
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Journal article (peer-reviewed)abstract
- The cellular mechanisms of calcification in sea urchin larvae are still not well understood. Primary mesenchyme cells within the larval body cavity form a syncytium to secrete CaCO3 spicules from intracellular amorphous CaCO3 (ACC) stores. We studied the role of Na+K+2Cl- cotransporter (NKCC) in intracellular ACC accumulation and larval spicule formation of Strongylocentrotus droebachiensis. First, we incubated growing larvae with three different loop diuretics (azosemide, bumetanide, and furosemide) and established concentration-response curves. All loop diuretics were able to inhibit calcification already at concentrations that specifically inhibit NKCC. Calcification was most effectively inhibited by azosemide (IC50=6.5μM), while larval mortality and swimming ability were not negatively impacted by the treatment. The inhibition by bumetanide (IC50=26.4μM) and furosemide (IC50=315.4μM) resembled the pharmacological fingerprint of the mammalian NKCC1 isoform. We further examined the effect of azosemide on the maintenance of cytoplasmic cords and on the occurrence of calcification vesicles using fluorescent dyes (calcein, FM1-43). Fifty micromolars of azosemide inhibited the maintenance of cytoplasmic cords and resulted in increased calcein fluorescence within calcification vesicles. The expression of NKCC in S. droebachiensis was verified by PCR and Western blot with a specific NKCC antibody. In summary, the pharmacological profile of loop diuretics and their specific effects on calcification in sea urchin larvae suggest that they act by inhibition of NKCC via repression of cytoplasmic cord formation and maintenance.
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| 8. |
- Bednarsek, Nina, et al.
(author)
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Polar Ocean Acidification : LOSS OF RESOURCES FROM THE “OTHER” CO2 PROBLEM
- 2015
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In: Thresholds and Closing December. RISKS OF IRREVERSIBLE CRYOSPHERE CLIMATE CHANGE. The International Cryosphere Climate Initiative. ; , s. 19-22
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Book chapter (other academic/artistic)abstract
- Although technically not “cryosphere” (which is frozen water), the Arctic Ocean, and Southern Ocean around Antarctica make up some of the world’s richest fisheries, with diverse marine ecosystems. These cold waters are however highly vulnerable to ocean acidification from increased carbon dioxide (CO2) in the atmosphere. We already are crossing important ocean acidification thresholds in these regions, with early impacts possibly observed on some polar ocean species. There is substantial risk that ocean acidification will damage ecosystems and weaken the food chain in these important resource waters, even should countries meet the stated 2 degree goal, which entails atmospheric CO2 levels peaking at 450ppm. However, CO2 concentrations associated with current INDCs in the 2.7–3.5 degree range are far higher still, anticipated to peak potentially above 600ppm. At such high levels, and because of the very long time scales required for acidity to decrease, there is high risk for irreversible impacts on biodiversity in the Arctic and Southern oceans, with consequences for polar and near-polar fisheries and human activities.
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| 9. |
- Behbehani, M., et al.
(author)
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Response of corals Acropora pharaonis and Porites lutea to changes in pH and temperature in the Gulf
- 2019
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In: Sustainability (Switzerland). - : MDPI AG. - 2071-1050. ; 11:11
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Journal article (peer-reviewed)abstract
- Coral reefs are harboring a large part of the marine biodiversity and are important ecosystems for the equilibrium of the oceans. As a consequence of anthropogenic CO2 emission, a drop in pH and an increase in seawater temperature is observed in the Gulf coastal waters that potentially threaten coral assemblages. An experimental study was conducted on two species of corals to assess the effect of ocean warming and ocean acidification on the net calcification rate. Two pH conditions 8.2 and 7.5 and three temperatures, 22.5, 27.5 and 32.5 °C, were considered. Net calcification rates were measured using 45Ca radiotracer. Both temperature and pH had a significant effect on net calcification rates following a similar pattern for both species. The highest calcification rate was observed at low temperature and high pH. Increased temperature and decreased pH led to a decrease in net calcification rates. An interactive effect was observed as the effect of pH decreased with increasing temperature. However, the two species of coral were able to calcify in all the tested combination of temperature and pH suggesting that they are adapted to short term changes in temperature and pH. Ability to calcify even at a high temperature of 32.5 °C that is identical to the summertime Gulf seawater temperature under both the ambient and low pH condition with no mortalities, raises a question: are these corals adapted to high seawater temperatures and low pH? More in-depth assessments will be required to confirm if this is an adaptation to higher temperatures in Persian Gulf corals. © 2019 by the authors.
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| 10. |
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