| 1. |
- Edfors, Fredrik, et al.
(författare)
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Gene-specific correlation of RNA and protein levels in human cells and tissues
- 2016
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Ingår i: Molecular Systems Biology. - : EMBO. - 1744-4292 .- 1744-4292. ; 12:10
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Tidskriftsartikel (refereegranskat)abstract
- An important issue for molecular biology is to establish whether transcript levels of a given gene can be used as proxies for the corresponding protein levels. Here, we have developed a targeted proteomics approach for a set of human non-secreted proteins based on parallel reaction monitoring to measure, at steady-state conditions, absolute protein copy numbers across human tissues and cell lines and compared these levels with the corresponding mRNA levels using transcriptomics. The study shows that the transcript and protein levels do not correlate well unless a gene-specific RNA-to-protein (RTP) conversion factor independent of the tissue type is introduced, thus significantly enhancing the predictability of protein copy numbers from RNA levels. The results show that the RTP ratio varies significantly with a few hundred copies per mRNA molecule for some genes to several hundred thousands of protein copies per mRNA molecule for others. In conclusion, our data suggest that transcriptome analysis can be used as a tool to predict the protein copy numbers per cell, thus forming an attractive link between the field of genomics and proteomics.
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| 2. |
- Lundberg, Björn, 1982, et al.
(författare)
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DOC modeling combining kinetics and mass transfer using inert washcoat layers
- 2016
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Ingår i: Applied Catalysis B: Environmental. - : Elsevier BV. - 0926-3373 .- 1873-3883. ; 191, s. 116-129
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Tidskriftsartikel (refereegranskat)abstract
- The aim of this study was to develop a kinetic and transport model for diesel oxidation catalysts (DOC) with a satisfactory compromise between accuracy and computational demands for robust simulation of transient full-scale operation. Specifically the model accounts for surface concentrations of key species needed to capture transient features for typical lean exhaust conditions. In addition, the model accounts for transport limitations and distinguish them from reaction kinetics as well as apparent NO oxidation inhibition effects due to reactions. To achieve this, lab scale experiments were performed with DOCs with different platinum loadings and three different washcoat configurations of which two had an inert top layer. Both kinetic parameters for a detailed kinetic model and effective diffusivities were optimized for the experimental data using a single channel catalyst model. The experiments showed a clear effect of increased transport resistance for propene and CO and also that NO2 plays an important role as an oxidizing agent for preferentially CO at low temperature (
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| 3. |
- Lundberg, Björn, 1982, et al.
(författare)
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Model-based experimental screening for DOC parameter estimation
- 2015
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Ingår i: Computers and Chemical Engineering. - : Elsevier BV. - 0098-1354. ; 74, s. 144-157
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Tidskriftsartikel (refereegranskat)abstract
- In the current study a parameter estimation method based on data screening by sensitivity analysis is presented. The method applied Multivariate Data Analysis (MVDA) on a large transient data set to select different subsets on which parameters estimation was performed. The subset was continuously updated as the parameter values developed using Principal Component Analysis (PCA) and D-optimal onion design. The measurement data was taken from a Diesel Oxidation Catalyst (DOC) connected to a full scale engine rig and both kinetic and mass transport parameters were estimated. The methodology was compared to a conventional parameter estimation method and it was concluded that the proposed method achieved a 32% lower residual sum of squares but also that it displayed less tendencies to converge to a local minima. The computational time was however significantly longer for the evaluated method.
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| 4. |
- Abdallah, J., et al.
(författare)
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The Laser calibration of the ATLAS Tile Calorimeter during the LHC run 1
- 2016
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Ingår i: Journal of Instrumentation. - 1748-0221. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- This article describes the Laser calibration system of the ATLAS hadronic Tile Calorimeter that has been used during the run 1 of the LHC. First, the stability of the system associated readout electronics is studied. It is found to be stable with variations smaller than 0.6 %. Then, the method developed to compute the calibration constants, to correct for the variations of the gain of the calorimeter photomultipliers, is described. These constants were determined with a statistical uncertainty of 0.3 % and a systematic uncertainty of 0.2 % for the central part of the calorimeter and 0.5 % for the end-caps. Finally, the detection and correction of timing mis-configuration of the Tile Calorimeter using the Laser system are also presented.
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| 5. |
- Araghi, Marzieh, et al.
(författare)
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Smokeless tobacco (snus) use and colorectal cancer incidence and survival : Results from nine pooled cohorts
- 2017
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Ingår i: Scandinavian Journal of Public Health. - : SAGE Publications. - 1403-4948 .- 1651-1905. ; 45:8, s. 741-748
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Tidskriftsartikel (refereegranskat)abstract
- AIMS: Although smoking is considered to be an established risk factor for colorectal cancer, the current evidence on the association between smokeless tobacco and colorectal cancer is scant and inconclusive. We used pooled individual data from the Swedish Collaboration on Health Effects of Snus Use to assess this association.METHODS: A total of 417,872 male participants from nine cohort studies across Sweden were followed up for incidence of colorectal cancer and death. Outcomes were ascertained through linkage to health registers. We used shared frailty models with random effects at the study level to estimate hazard ratios (HRs) and 95% confidence intervals (CIs).RESULTS: During 7,135,504 person-years of observation, 4170 men developed colorectal cancer. There was no clear association between snus use and colorectal cancer overall. Exclusive current snus users, however, had an increased risk of rectal cancer (HR 1.40: 95% CI 1.09, 1.79). There were no statistically significant associations between snus use and either all-cause or colorectal cancer-specific mortality after colorectal cancer diagnosis.CONCLUSIONS: Our findings, from a large sample, do not support any strong relationships between snus use and colorectal cancer risk and survival among men. However, the observed increased risk of rectal cancer is noteworthy, and in merit of further attention.
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| 6. |
- Arvidsson, Anna K, 1971-, et al.
(författare)
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Friktions- och texturutveckling på nya beläggningar
- 2019
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- En ny vägyta bör vara och upplevas som säker av trafikanterna oavsett vilket väglag som råder. Det är därför viktigt att vägbanan har en tillfredställande nivå på friktion redan när vägen öppnas. Det finns begränsade dokumenterade kunskaper hur vägen förändras den första tiden efter en beläggningsåtgärd.Syftet med detta projekt är att fastställa hur friktionen förändras under den första tiden efter att vägbeläggningen är lagd och trafikpåsläpp sker. Ambitionen är att kunna avgöra om nylagda vägavsnitt har nedsatt friktion och ge rekommendationer för när en friktionsmätning ska utföras och hur skyltning ska ske i anslutning till beläggningsarbeten. Upplägget har varit att följa olika objekt med täta friktions- och texturmätningar från strax innan trafikpåsläpp tills nivåerna har stabiliserats.Initialt är friktionen hög för att sen avta med mängden trafik. Efter 1–3 veckor nåddes det lägsta värdet och därefter ökade eller stabiliserades friktionen. Gemensamt för alla undersökta sträckor var att det sker stora förändringar i texturnivåerna från att det första fordonet trafikerar vägen och därefter är den starkaste tendensen en sjunkande texturnivå tills en stabil nivå uppnås efter 1–3 veckor.
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| 7. |
- Attié, David, et al.
(författare)
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A time projection chamber with GEM-based readout
- 2017
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Ingår i: Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. - : Elsevier BV. - 0168-9002. ; 856, s. 109-118
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Tidskriftsartikel (refereegranskat)abstract
- For the International Large Detector concept at the planned International Linear Collider, the use of time projection chambers (TPC) with micro-pattern gas detector readout as the main tracking detector is investigated. In this paper, results from a prototype TPC, placed in a 1. T solenoidal field and read out with three independent Gas Electron Multiplier (GEM) based readout modules, are reported. The TPC was exposed to a 6. GeV electron beam at the DESY II synchrotron. The efficiency for reconstructing hits, the measurement of the drift velocity, the space point resolution and the control of field inhomogeneities are presented.
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| 8. |
- Auvray, Xavier, 1986, et al.
(författare)
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Aging of Cu/SSZ-13 for NH3 SCR in mixed lean condition
- 2018
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- Two catalytic methods have been developed to remove the NOx emissions from diesel vehicles and comply with the emission regulations: the NOx storage and reduction process (NSR) and the reduction of NOx with NH3 (SCR). Advanced systems combining these two methods for an optimum efficiency are now studied. SCR catalysts are subjected alternating lean and rich conditions as well as to high temperatures in rich conditions during deSOx of the LNT material. The purpose of the present work is therefore to determine the response of a Cu/SSZ-13 to several aging treatments at 800°C involving rich and/or lean exposure. Deactivation was observed after all types of aging. However strong differences in deactivation degree exists between aging procedures. Lean aging, for 8h at 800°C, was the most moderate aging tested although it brought about significant activity loss below 250°C. Alternating between long lean periods and short rich periods caused slightly stronger deactivation, which was most significant at 200°C. However, the switching frequency between lean and rich had negligible influence on subsequent activity. As shown in Figure 1, SCR activity after 8h exposure in H2 was outstandingly low. It increased monotonically with temperature to reach a maximum of 58% NO conversion. Further investigation pertaining to the rich treatment was performed. The aging time was reduced to 2h and, for direct comparison, a 32h cycling aging was performed, implying a total rich time of 2h. Both samples were severely impacted over the whole temperature range. It revealed that 2h in rich conditions led to stronger deactivation than 8h in lean and lean/rich conditions, emphasizing the deterioration power of H2. Aging caused by rich conditions was so dominant that additional 30h in lean has negligible influence on SCR below 300°C. However, the long additional exposure to lean conditions lowered significantly the SCR activity between 400 and 500°C.
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| 9. |
- Auvray, Xavier, 1986, et al.
(författare)
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Deactivation of Cu/SSZ-13 NH3-SCR catalyst by exposure to CO, H2, and C3H6
- 2019
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Ingår i: Catalysts. - : MDPI AG. - 2073-4344. ; 9:11
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Tidskriftsartikel (refereegranskat)abstract
- Lean nitric oxide (NOx)-trap (LNT) and selective catalytic reduction (SCR) are efficient systems for the abatement of NOx. The combination of LNT and SCR catalysts improves overall NOx removal, but there is a risk that the SCR catalyst will be exposed to high temperatures and rich exhaust during the LNTs sulfur regeneration. Therefore, the effect of exposure to various rich conditions and temperatures on the subsequent SCR activity of a Cu-exchanged chabazite catalyst was studied. CO, H2, C3H6, and the combination of CO + H2 were used to simulate rich conditions. Aging was performed at 800 °C, 700 °C, and, in the case of CO, 600 °C, in a plug-flow reactor. Investigation of the nature of Cu sites was performed with NH3-temperature-programed desorption (TPD) and diffuse reflectance infrared Fourier transform spectroscopy (DRIFT) of probe molecules (NH3 and NO). The combination of CO and H2 was especially detrimental to SCR activity and to NH3 oxidation. Rich aging with low reductant concentrations resulted in a significantly larger deactivation compared to lean conditions. Aging in CO at 800 °C caused SCR deactivation but promoted high-temperature NH3 oxidation. Rich conditions greatly enhanced the loss of Brønsted and Lewis acid sites at 800 °C, indicating dealumination and Cu migration. However, at 700 °C, mainly Brønsted sites disappeared during aging. DRIFT spectroscopy analysis revealed that CO aging modified the Cu2+/CuOH+ ratio in favor of the monovalent CuOH+ species, as opposed to lean aging. To summarize, we propose that the reason for the increased deactivation observed for mild rich conditions is the transformation of the Cu species from Z2Cu to ZCuOH, possibly in combination with the formation of Cu clusters. © 2019, MDPI AG. All rights reserved.
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| 10. |
- Auvray, Xavier, 1986, et al.
(författare)
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Lean and rich aging of a Cu/SSZ-13 catalyst for combined lean NO x trap (LNT) and selective catalytic reduction (SCR) concept
- 2019
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Ingår i: Catalysis Science and Technology. - : Royal Society of Chemistry (RSC). - 2044-4753 .- 2044-4761. ; 9:9, s. 2152-2162
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Tidskriftsartikel (refereegranskat)abstract
- © 2019 The Royal Society of Chemistry. In the combined lean NO x trap (LNT) and selective catalytic reduction (SCR) concept, the SCR catalyst can be exposed to rich conditions during deSO x of the LNT. Aging of Cu/SSZ-13 SCR catalysts, deposited on a cordierite monolith, was therefore studied in rich, lean and cycling lean/rich operations at 800 °C (lean condition: 500 ppm NO, 8% O 2 , 10% H 2 O and 10% CO 2 ; rich condition: 500 ppm NO, 1% H 2 , 10% H 2 O and 10% CO 2 ). The structure of the catalyst was investigated by X-ray diffraction (XRD), surface area measurements and scanning transmission electron microscopy (STEM). In general, aging decreased the SCR activity and NH 3 oxidation. However, rich conditions showed a very rapid and intense deactivation, while lean aging led to only a small low-temperature activity decrease. The XRD results showed no sign of structure collapse, but the number of active sites, as titrated by NH 3 temperature-programed desorption (NH 3 -TPD) and in situ DRIFTS, revealed an important loss of acid sites. NH 3 storage was significantly more depleted after rich aging than after lean aging. The Lewis sites, corresponding to exchange Cu 2+ , were preserved to some extent in lean conditions. Lean aging also decreased the enthalpy of NH 3 adsorption from -158 kJ mol -1 to -136 kJ mol -1 . Moreover, a comparison of aging in lean-rich cycling conditions with aging only in rich conditions revealed that adding lean events did not hinder or reverse the deactivation, and it was mainly the time in rich conditions that determined the extent of the deactivation. The STEM images coupled with elemental analysis revealed the formation of large Cu particles during rich aging. Conversely, Cu remained well dispersed after lean aging. These results suggest that the copper migration and agglomeration in large extra-framework particles, accelerated by the action of hydrogen, caused the observed severe deactivation.
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