| 1. |
- Aissaoui, Nesrine, 1983, et al.
(författare)
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FRET enhancement close to gold nanoparticles positioned in DNA origami constructs
- 2017
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Ingår i: Nanoscale. - Cambridge, United Kingdom : Royal Society of Chemistry (RSC). - 2040-3372 .- 2040-3364. ; 9:2, s. 673-683
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Tidskriftsartikel (refereegranskat)abstract
- Here we investigate the energy transfer rates of a Förster resonance energy transfer (FRET) pair positioned in close proximity to a 5 nm gold nanoparticle (AuNP) on a DNA origami construct. We study the distance dependence of the FRET rate by varying the location of the donor molecule, D, relative to the AuNP while maintaining a fixed location of the acceptor molecule, A. The presence of the AuNP induces an alteration in the spontaneous emission of the donor (including radiative and non-radiative rates) which is strongly dependent on the distance between the donor and AuNP surface. Simultaneously, the energy transfer rates are enhanced at shorter D-A (and D-AuNP) distances. Overall, in addition to the direct influence of the acceptor and AuNP on the donor decay there is also a significant increase in decay rate not explained by the sum of the two interactions. This leads to enhanced energy transfer between donor and acceptor in the presence of a 5 nm AuNP. We also demonstrate that the transfer rate in the three "particle" geometry (D + A + AuNP) depends approximately linearly on the transfer rate in the donor-AuNP system, suggesting the possibility to control FRET process with electric field induced by 5 nm AuNPs close to the donor fluorophore. It is concluded that DNA origami is a very versatile platform for studying interactions between molecules and plasmonic nanoparticles in general and FRET enhancement in particular.
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| 2. |
- Albinsson, Bo, 1963, et al.
(författare)
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Anti, ortho, and gauche conformers of perfluoro-n-butane: Matrix-isolation IR spectra and calculations
- 1996
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Ingår i: Journal of Physical Chemistry. - 0022-3654. ; 100:9, s. 3418-3429
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Tidskriftsartikel (refereegranskat)abstract
- Nitrogen matrix-isolation IR spectra have been obtained for each of the three conformers of n-C4F10 (gauche, ortho, and anti) by trapping a hot conformer mixture on a cold CsI window and subsequent matrix annealing and spectral differencing. They were assigned by comparison with results of HF/6-31G* calculations, and the nature of the normal modes has been analyzed using the total energy distribution procedure. At the fully optimized MP2/6-31G* (frozen core) level, the CCCC dihedral angles and relative energies (kcal/mol) are 54.2 degrees and 0.68 (gauche), 94.8 degrees and 1.63 (ortho), and 165.5 degrees and 0 (anti). Single-point MP2/6-311G* (frozen core) relative energies at these geometries are 0.85, 2.12, and 0 kcal/mol, respectively. Only a minute amount of the ortho conformer is trapped in nitrogen matrix, and none in other matrices that were tried. A variation of the relative intensities of IR peaks of the gauche and anti conformers as a function of the temperature of the gas before deposition yields an ''average'' Delta H value of about 0.9 kcal/mol, with the anti conformer more stable. The temperature range covered was too small to reveal the expected bilinear nature of the van't Hoff plot.
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| 3. |
- Albinsson, Bo, 1963, et al.
(författare)
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Conformers of n-Si5Me12: A comparison of ab initio and molecular mechanics methods
- 1999
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Ingår i: Journal of Physical Chemistry A. - 1089-5639 .- 1520-5215. ; 103:14, s. 2184-2196
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Tidskriftsartikel (refereegranskat)abstract
- Optimized geometries of the conformers of permethylated linear pentasilane, n-Si5Me12, were calculated by the HF/3-21G*, MM3, MM2, and MM+ methods, which predict eight, nine, six, and six energetically distinct enantiomeric conformer pairs, respectively, at geometries representing various combinations of the anti (similar to 165 degrees), ortho (similar to 90 degrees), and gauche (similar to 55 degrees) SiSiSiSi dihedral angles in the backbone. The results of the MM2 and MM+ methods, based on the same force field, differ insignificantly. The barriers between conformers appear to be exaggerated by the molecular mechanics methods, particularly MM2. Contour maps showing the groundstate energy as a function of the full range of two backbone SiSiSiSi dihedral angles, with all other geometrical variables optimized, computed by each of the methods (only a limited range of angles near the anti,anti geometry in the case of HF/3-21G*) are compared with each other and with analogous results for a model compound, Si4Me10. Conformer interconversion paths are discussed, and two meso transition states for enantiomer interconversion have been located at the HF/3-21G* level of calculation. At the eight HF/3-21G* optimized geometries, single-point energies (HF/6-31G* and MP2/6-31G*) and vibrational frequencies (HF/3-21G*) were computed. The predicted IR and Raman spectra suggest that about half of the expected conformers will be identifiable by vibrational spectroscopy under conditions of matrix isolation. Relative conformer energies calculated by the MM2 and HF methods are similar and favor the anti dihedral angles over gauche and ortho, in agreement with results of solution experiments. Those calculated by the hIM3 and HF methods are similar to each other and favor both anti and gauche dihedral angles nearly equally over ortho, in agreement with indications provided by gas-phase experiments. A rationalization of these solvent effects is proposed. The energies of the conformers of Si4Me10 and Si3Me12 were used to set up a system of additive increments at the MM2, MM3, HF/3-21G*, HF/6-31G*, and MP2/6-31G* levels of calculation, which can be used to predict conformational energies of longer permethylated oligosilanes. An intrinsic energy value is assigned to each of the a, o, and g dihedral angles, and interaction energy values are assigned to each combination of two dihedral angles. The interaction values follow the expected rules in that equal twist sense is favored for adjacent aa, ag, oo, and gg pairs, whereas opposite twist sense is generally favored for adjacent so and go pairs. The MM3-derived set of increments has been tested against results computed for Si6Me14 and found to perform well.
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| 4. |
- Albinsson, Bo, 1963, et al.
(författare)
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Conformers of saturated chains: Matrix isolation, structure, IR and UV spectra of n-Si(4)Me(10)
- 1996
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Ingår i: Chemistry - A European Journal. - 1521-3765 .- 0947-6539. ; 2:5, s. 529-538
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Tidskriftsartikel (refereegranskat)abstract
- Infrared and ultraviolet spectra of the gauche and anti conformers of matrix-isolated permethyl-n-tetrasilane have been obtained separately by taking advantage of thermally induced gauche-to-anti conversion and of wavelength-selective photochemical destruction of either conformer. The resolved UV spectrum of the gauche conformer provides the first piece of experimental evidence in favor of the recently proposed reinterpretation of conformational effects on tetrasilane electronic states. According to this, it is not the energy but the intensity of the lowest singlet excitation that changes dramatically as the SiSiSiSi dihedral angle is varied, as a result of an avoided crossing between sigma sigma* and sigma pi* states. Implications for the general understanding of sigma conjugation in simple terms are discussed. Unconstrained MP2/6-31G* optimization predicts the existence of a third backbone conformer (ortho), with a dihedral angle of about 90 degrees. Its predicted (HF/3-21G*) mid-IR spectrum is indistinguishable from that of the gauche conformer, and the matrix-isolation spectra thus provide no evidence for or against its presence.
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| 5. |
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| 6. |
- Albinsson, Bo, 1963
(författare)
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Dual fluorescence from N-6,N-6-dimethyladenosine
- 1997
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Ingår i: Journal of the American Chemical Society. - 1520-5126 .- 0002-7863. ; 119:27, s. 6369-6375
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Tidskriftsartikel (refereegranskat)abstract
- The adenosine derivative N-6,N-6-dimethyladenosine (DMA) shows dual fluorescence in solvents of different polarity. In addition to the ''normal'' fluorescence at 330 nm, another band is observed at 500 nm. The long wavelength emission dominates in aprotic solvents but is dynamically quenched by protic solvents. Steady-state and lifetime measurements show that the emissions originate from two excited state species; the short wavelength emission is from the directly populated excited state which irreversibly isomerizes into the species responsible for the long wavelength emission. It is conceivable to assign the long wavelength emitting species to a twisted intramolecular charge transfer state (TICT). The fluorescence quantum yield of the short wavelength emission is approximately 4 x 10(-4) at room temperature and increases by three orders of magnitude when the temperature is lowered to 80 K in accordance with the behavior of normal nucleic acid bases. In contrast, the long wavelength fluorescence quantum yield is almost temperature independent. The different photophysical processes for DMA are summarized into a kinetic scheme where the temperature quenching of the short wavelength fluorescence is exclusively through isomerization into the long wavelength emitting species. Direct internal conversion to the ground state, commonly believed to be the dominant process for nonradiative deactivation of the DNA bases, makes a negligible contribution for DMA.
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| 7. |
- Albinsson, Bo, 1963, et al.
(författare)
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Electron and energy transfer in donor-acceptor systems with conjugated molecular bridges
- 2007
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Ingår i: Physical Chemistry Chemical Physics. - : Royal Society of Chemistry (RSC). - 1463-9084 .- 1463-9076. ; 9:44, s. 5847-5864
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Tidskriftsartikel (refereegranskat)abstract
- Electron and energy transfer reactions in covalently connected donor-bridge-acceptor assemblies are strongly dependent, not only on the donor-acceptor distance, but also on the electronic structure of the bridge. In this article we describe some well characterised systems where the bridges are π-conjugated chromophores, and where, specifically, the interplay between bridge length and energy plays an important role for the donor-acceptor electronic coupling. For any application that relies on the transport of electrons, for example molecule based solar cells or molecular scale electronics, it will be imperative to predict the electron transfer capabilities of different molecular structures. The potential difficulties with making such predictions and the lack of suitable models are also discussed. © the Owner Societies.
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| 8. |
- Albinsson, Bo, 1963, et al.
(författare)
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Electron Transfer Through Butadiyne-Linked Porphyrin-Based Molecular Wires
- 2012
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Ingår i: Multiporphyrin Arrays: Fundamentals and Applications. - : Pan Stanford Publishing. - 9789814364287 ; , s. 55-90
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- Electron transfer is of fundamental importance in many areas of chemistry and biochemistry [1]. The ability to transfer charge efficiently over distances in the 10 nm range is crucial in various practical devices, such as organic transistors and solar cells both dye-sensitized metal oxide solar cells and bulk-heterojunction blend devices [2]. Furthermore, in the context of the ever-decreasing dimensions of integrated circuits, it is interesting to study charge transport through individual molecules [3]. Organic π -conjugated oligomers and polymers are attractive candidates as molecularwires, because modern synthetic chemistry can be used to create almost any type of π -conjugated backbone, while non-covalent interactions and supramolecular chemistry can be used to modify the backbone conformation. Interactions of conjugated oligomers, both with each other and with the external environment, can also be controlled by self-assembly and non-covalent encapsulation.
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| 9. |
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| 10. |
- Albinsson, Bo, 1963, et al.
(författare)
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ELECTRONIC-TRANSITION MOMENT DIRECTIONS AND IDENTIFICATION OF LOW-ENERGY N-PI-ASTERISK STATES IN WEAKLY PERTURBED PURINE CHROMOPHORES
- 1993
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Ingår i: Journal of the American Chemical Society. - : American Chemical Society (ACS). - 1520-5126 .- 0002-7863. ; 115:1, s. 223-231
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Tidskriftsartikel (refereegranskat)abstract
- Measurements of UV linear dichroism on purine and three methyl derivatives partially oriented in poly(vinyl alcohol) matrix gave direct evidence for the assignment of the first singlet npi* state. Intensity distributions and moment directions for the first three pi --> pi* transitions were also determined. The pi --> pi* transitions in purine were found to be polarized at (angles, relative to the pseudo-symmetry long axis, counted positive in the N7 direction): -31-degrees +/- 5-degrees (II at 265 nm), +38-degrees +/- 5-degrees (III at 244 nm), and +36-degrees +/- 10-degrees (IV at 214 nm). The transition energies and moment directions were not markedly perturbed by methyl substitution at the sixth, seventh, or ninth position. Therefore, these methyl substituents could be used as orientational perturbers to resolve a sign ambiguity problem regarding transition moment directions. The orientation were determined by infrared dichroic measurements using both in-plane and out-of-plane polarized vibrational transitions. In addition, the phosphorescence spectra were studied, including phosphorescence anisotropy, phosphorescence lifetimes, and quantum yields, for the purines in an organic glass at 80 K. Based on these measurements, the lowest triplet state is concluded to have effectively pipi* character, and its emission allowedness appears to originate from spin-orbit interactions primarily with singlet sigmapi* states but also with singlet pipi* states via vibronic mixing. The phosphorescence emission spectra of purine and 6-methylpurine are complex, compared to 7-methylpurine and 9-methylpurine, with emission wavelength-dependent lifetimes and excitation spectra. This is ascribed to a prototropic tautomeric equilibrium between the 7H and 9H forms of purine and 6-methylpurine, a ground-state heterogeneity that we believe has caused confusion in earlier studies and, e.g., led to an assignment of the phosphorescence origin of purine.
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