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Modular, scriptable...
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
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- Samuelsson, Jim (författare)
- Genedata GmbH, Lena-Christ-Strasse 50, 82152 Martinsried, Germany
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- Dalevi, Daniel (författare)
- Computing Science, Chalmers University of Technology, SE-412 96 Göteborg
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- Levander, Fredrik (författare)
- Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH,Department of Protein Technology, Lund University, Sölvegatan 33A
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- Rögnvaldsson, Thorsteinn (författare)
- Högskolan i Halmstad,Intelligenta system (IS-lab)
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(creator_code:org_t)
- 2004-08-05
- 2004
- Engelska.
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Ingår i: Bioinformatics. - Oxford : Oxford University Press. - 1367-4803 .- 1367-4811. ; 20:18, s. 3628-3635
- Relaterad länk:
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https://doi.org/10.1...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- A set of new algorithms and software tools for automatic protein identification using peptide mass fingerprinting is presented. The software is automatic, fast and modular to suit different laboratory needs, and it can be operated either via a Java user interface or called from within scripts. The software modules do peak extraction, peak filtering and protein database matching, and communicate via XML. Individual modules can therefore easily be replaced with other software if desired, and all intermediate results are available to the user. The algorithms are designed to operate without human intervention and contain several novel approaches. The performance and capabilities of the software is illustrated on spectra from different mass spectrometer manufacturers, and the factors influencing successful identification are discussed and quantified.
Ämnesord
- NATURVETENSKAP -- Data- och informationsvetenskap -- Programvaruteknik (hsv//swe)
- NATURAL SCIENCES -- Computer and Information Sciences -- Software Engineering (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
Nyckelord
- Fingerprints
- Automated analysis
- Tools
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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