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ST Pipeline :
ST Pipeline : an automated pipeline for spatial mapping of unique transcripts
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- Navarro, Jose Fernandez (författare)
- KTH,Genteknologi,Science for Life Laboratory, SciLifeLab
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- Sjöstrand, Joel (författare)
- KTH,Genteknologi,Science for Life Laboratory, SciLifeLab
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- Salmén, Fredrik (författare)
- KTH,Genteknologi,Science for Life Laboratory, SciLifeLab
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- Lundeberg, Joakim (författare)
- KTH,Genteknologi,Science for Life Laboratory, SciLifeLab
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- Ståhl, Patrik L. (författare)
- KTH,Genteknologi,Science for Life Laboratory, SciLifeLab,Karolinska Institutet, Sverige
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(creator_code:org_t)
- 2017-04-07
- 2017
- Engelska.
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Ingår i: Bioinformatics. - : Oxford University Press. - 1367-4803 .- 1367-4811. ; 33:16, s. 2591-2593
- Relaterad länk:
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https://academic.oup...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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http://kipublication...
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Abstract
Ämnesord
Stäng
- Motivation: In recent years we have witnessed an increase in novel RNA-seq based techniques for transcriptomics analysis. Spatial transcriptomics is a novel RNA-seq based technique that allows spatial mapping of transcripts in tissue sections. The spatial resolution adds an extra level of complexity, which requires the development of new tools and algorithms for efficient and accurate data processing. Results: Here we present a pipeline to automatically and efficiently process RNA-seq data obtained from spatial transcriptomics experiments to generate datasets for downstream analysis.
Ämnesord
- NATURVETENSKAP -- Data- och informationsvetenskap -- Bioinformatik (hsv//swe)
- NATURAL SCIENCES -- Computer and Information Sciences -- Bioinformatics (hsv//eng)
Publikations- och innehållstyp
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- art (ämneskategori)
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