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Sökning: id:"swepub:oai:DiVA.org:oru-63706" > COordination of Sta...

COordination of Standards in MetabOlomicS (COSMOS) : facilitating integrated metabolomics data access

Salek, Reza M (författare)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom
Neumann, Steffen (författare)
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany
Schober, Daniel (författare)
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany
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Hummel, Jan (författare)
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
Billiau, Kenny (författare)
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
Kopka, Joachim (författare)
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
Correa, Elon (författare)
School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom
Reijmers, Theo (författare)
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands
Rosato, Antonio (författare)
Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy
Tenori, Leonardo (författare)
Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy; FiorGen Foundation, Sesto Fiorentin FI, Italy
Turano, Paola (författare)
Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy
Marin, Silvia (författare)
Department of Biochemistry and Molecular Biology, IBUB, Universitat de Barcelona, Barcelona, Spain
Deborde, Catherine (författare)
INRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France
Jacob, Daniel (författare)
INRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France
Rolin, Dominique (författare)
INRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France
Dartigues, Benjamin (författare)
Centre of bioinformatics of Bordeaux (CBiB), University of Bordeaux, Bordeaux, France
Conesa, Pablo (författare)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom
Haug, Kenneth (författare)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom
Rocca-Serra, Philippe (författare)
University of Oxford e-Research Centre, Oxford, United Kingdom
O'Hagan, Steve (författare)
School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom
Hao, Jie (författare)
Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, London, United Kingdom
van Vliet, Michael (författare)
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands
Sysi-Aho, Marko (författare)
Zora Biosciences OY, Espoo, Finland
Ludwig, Christian (författare)
School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom
Bouwman, Jildau (författare)
Microbiology & Systems Biology TNO, Zeist, Netherlands
Cascante, Marta (författare)
Department of Biochemistry and Molecular Biology, IBUB, Universitat de Barcelona, Barcelona, Spain
Ebbels, Timothy (författare)
Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, London, United Kingdom
Griffin, Julian L (författare)
Medical Research Council Human Nutrition Research, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom
Moing, Annick (författare)
INRA, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center (IBVM), Centre INRA Bordeaux Villenave d’Ornon, Univ. Bordeaux, Bordeaux, France
Nikolski, Macha (författare)
University of Bordeaux CBiB/LaBRI, Bordeaux, France
Oresic, Matej, 1967- (författare)
Örebro universitet,Institutionen för medicinska vetenskaper,Zora Biosciences OY, Espoo, Finland
Sansone, Susanna-Assunta (författare)
University of Oxford e-Research Centre, Oxford, United Kingdom
Viant, Mark R. (författare)
School of Biosciences, University of Birmingham Edgbaston, Birmingham, United Kingdom
Goodacre, Royston (författare)
School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom
Günther, Ulrich L (författare)
School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom
Hankemeier, Thomas (författare)
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands
Luchinat, Claudio (författare)
Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy
Walther, Dirk (författare)
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
Steinbeck, Christoph (författare)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom
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 (creator_code:org_t)
2015-05-26
2015
Engelska.
Ingår i: Metabolomics. - : Springer-Verlag New York. - 1573-3882 .- 1573-3890. ; 11:6, s. 1587-1597
Relaterad länk:
https://doi.org/10.1...
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https://link.springe...
https://urn.kb.se/re...
https://doi.org/10.1...
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  • Tidskriftsartikel (refereegranskat)
Abstract Ämnesord
Stäng  
  • Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative 'coordination of standards in metabolomics' (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities' participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.

Ämnesord

NATURVETENSKAP  -- Data- och informationsvetenskap -- Bioinformatik (hsv//swe)
NATURAL SCIENCES  -- Computer and Information Sciences -- Bioinformatics (hsv//eng)
MEDICIN OCH HÄLSOVETENSKAP  -- Medicinsk bioteknologi -- Biomedicinsk laboratorievetenskap/teknologi (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Medical Biotechnology -- Biomedical Laboratory Science/Technology (hsv//eng)

Nyckelord

Coordination and data sharing community
Data exchange
Data standards
Metabolomics
Metabonomics
e-Infrastructure

Publikations- och innehållstyp

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art (ämneskategori)

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