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High-Quality Genome...
High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex
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- Ament-Velásquez, Sandra Lorena, Ph.D. 1988- (author)
- Stockholms universitet,Avdelningen för populationsgenetik,Stockholm Univ, Dept Zool, Div Populat Genet, S-10691 Stockholm, Sweden.
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- Vogan, Aaron A. (author)
- Uppsala universitet,Systematisk biologi
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- Wallerman, Ola (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi
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- Hartmann, Fanny E. (author)
- Univ Paris Saclay, Ecol Systemat Evolut, CNRS, AgroParisTech, F-91198 Gif Sur Yvette, France.
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- Gautier, Valerie (author)
- Univ Paris Cite, Lab Interdisciplinaire Energies Demain LIED, F-75013 Paris, France.
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- Silar, Philippe (author)
- Univ Paris Cite, Lab Interdisciplinaire Energies Demain LIED, F-75013 Paris, France.
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- Giraud, Tatiana (author)
- Univ Paris Saclay, Ecol Systemat Evolut, CNRS, AgroParisTech, F-91198 Gif Sur Yvette, France.
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- Johannesson, Hanna, 1970- (author)
- Uppsala universitet,Stockholms universitet,Institutionen för ekologi, miljö och botanik,Systematisk biologi,Royal Swedish Acad Sci, S-11418 Stockholm, Sweden.;Stockholm Univ, Dept Ecol Environm & Plant Sci, S-10691 Stockholm, Sweden.
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(creator_code:org_t)
- Oxford University Press, 2024
- 2024
- English.
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In: Genome Biology and Evolution. - : Oxford University Press. - 1759-6653. ; 16:3
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https://uu.diva-port... (primary) (Raw object)
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Abstract
Subject headings
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- The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of 7 closely related species. In addition to P. anserina, high-quality genomic resources are available for 2 of these taxa. Here, we provide chromosome-level annotated assemblies of the 4 remaining species of the complex, as well as a comprehensive data set of annotated assemblies from a total of 28 Podospora genomes. We find that all 7 species have genomes of around 35 Mb arranged in 7 chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.
Subject headings
- NATURVETENSKAP -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
Keyword
- Sordariales
- Podospora bellae-mahoneyi
- Podospora pseudoanserina
- Podospora pseudopauciseta
- Podospora pseudocomata
- chromosomal rearrangements
- phylogenomics
Publication and Content Type
- ref (subject category)
- art (subject category)
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