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The evolution and changing ecology of the African hominid oral microbiome

Yates, James A. Fellows (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Ludwig Maximilians Univ Munchen, Inst Pre & Protohistor Archaeol & Archaeol Roman, D-80539 Munich, Germany.
Velsko, Irina M. (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.,Univ Nacl Educac, Dept Prehist & Arqueol, Madrid 28040, Spain.
Aron, Franziska (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.
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Posth, Cosimo (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Eberhard Karls Univ Tubingen, Inst Archaeol Sci, D-72070 Tubingen, Germany.
Hofman, Courtney A. (author)
Univ Oklahoma, Dept Anthropol, Norman, OK 73019 USA.;Univ Oklahoma, Lab Mol Anthropol & Microbiome Res, Norman, OK 73019 USA.
Austin, Rita M. (author)
Univ Oklahoma, Dept Anthropol, Norman, OK 73019 USA.;Univ Oklahoma, Lab Mol Anthropol & Microbiome Res, Norman, OK 73019 USA.;Univ Oslo, Nat Hist Museum, N-0562 Oslo, Norway.
Parker, Cody E. (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Arizona State Univ, Sch Human Evolut & Social Change, Tempe, AZ 85287 USA.
Mann, Allison E. (author)
Univ North Texas, Hlth Sci Ctr, Dept Microbiol Immunol & Genet, Ft Worth, TX 76107 USA.
Nagele, Kathrin (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.
Arthur, Kathryn Weedman (author)
Univ S Florida, Dept Anthropol, St Petersburg, FL 33701 USA.
Arthur, John W. (author)
Univ S Florida, Dept Anthropol, St Petersburg, FL 33701 USA.
Bauer, Catherine C. (author)
Eberhard Karls Univ Tubingen, Dept Geosci, Palaeobiol, Biogeol, D-72074 Tubingen, Germany.,CNRS, Lab Chronoenvironm, UMR 6249, F-25030 Besancon, France.;Direct Reg Affaires Culturelles DRAC Bourgogne Fr, Serv Reg Archeol Bourgogne Franche Comte, F-25043 Besancon, France.
Crevecoeur, Isabelle (author)
Univ Bordeaux, CNRS, Prehistoire Actuel Culture Environm & Anthropol P, UMR 5199, F-33615 Pessac, France.
Cupillard, Christophe (author)
CNRS, Lab Chronoenvironm, UMR 6249, F-25030 Besancon, France.;Direct Reg Affaires Culturelles DRAC Bourgogne Fr, Serv Reg Archeol Bourgogne Franche Comte, F-25043 Besancon, France.,Calif State Univ Channel Isl, Anthropol Program, Camarillo, CA 93012 USA.,Ludwig Maximilians Univ Munchen, Inst Pre & Protohistor Archaeol & Archaeol Roman, D-80539 Munich, Germany.;Max Planck Inst Evolutionary Anthropol, Dept Human Evolut, D-04103 Leipzig, Germany.,Max Planck Inst Evolutionary Anthropol, Dept Human Evolut, D-04103 Leipzig, Germany.;Univ Pais Vasco Euskal Herriko Unibertsitatea, Basque Fdn Sci, Ikerbasque, Grp Invest Prehistoria IT 1223 19, Vitoria 01006, Spain.;Univ Valencia, Dept Prehist Hist & Arqueol, Valencia 46010, Spain.;Univ Cape Town, Dept Geol Sci, ZA-7701 Rondebosch, South Africa.
Curtis, Matthew C. (author)
Calif State Univ Channel Isl, Anthropol Program, Camarillo, CA 93012 USA.
Dalen, L (author)
Naturhistoriska riksmuseet,Enheten för bioinformatik och genetik,Ctr Palaeogenet, S-10691 Stockholm, Sweden.;Swedish Museum Nat Hist, Dept Bioinformat & Genet, S-10405 Stockholm, Sweden.
Bonilla, Marta Diaz-Zorita (author)
Eberhard Karls Univ Tubingen, Inst Ur & Fruhgeschichte & Archaol Mittelalters, D-72074 Tubingen, Germany.;Eberhard Karls Univ Tubingen, Sonderforschungsbereiche 1070 Ressourcen Kulturen, D-72074 Tubingen, Germany.
Fernandez-Lomana, J. Carlos Diez (author)
Univ Burgos, Prehist, Dept Hist Geog & Comunicac, Burgos 09001, Spain.
Drucker, Dorothee G. (author)
Eberhard Karls Univ Tubingen, Senckenberg Ctr Human Evolut & Palaeoenviroment, D-72074 Tubingen, Germany.
Escriva, Elena Escribano (author)
Escribano Escriva Clin Dent, Santa Cruz De Tenerife 38003, Spain.,Univ Cape Town, Dept Human Biol, Div Clin Anat & Biol Anthropol, ZA-7925 Cape Town, South Africa.,Forsyth Inst, Dept Microbiol, Cambridge, MA 02142 USA.;Harvard Sch Dent Med, Oral Med Infect & Immun, Boston, MA 02115 USA.
Francken, Michael (author)
Landesamt Denkmalpflege Regierungsprasidium Stutt, D-78467 Constance, Germany.
Gibbon, Victoria E. (author)
Univ Cape Town, Dept Human Biol, Div Clin Anat & Biol Anthropol, ZA-7925 Cape Town, South Africa.
Morales, Manuel R. Gonzalez (author)
Univ Cantabria Gobierno Cantabria Banco, Inst Int Invest Prehistor Cantabria, Santander 39071, Spain.
Mateu, Ana Grande (author)
Clin Dent Grande Mateu, Valencia 46004, Spain.
Harvati, Katerina (author)
Eberhard Karls Univ Tubingen, Senckenberg Ctr Human Evolut & Palaeoenviroment, D-72074 Tubingen, Germany.;Eberhard Karls Univ Tubingen, Inst Archaeol Sci, Paleoanthropol, D-72070 Tubingen, Germany.;Eberhard Karls Univ Tubingen, Deutsch Forsch Gemeinschaft Ctr Adv Studies Words, D-72070 Tubingen, Germany.
Henry, Amanda G. (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Leiden Univ, Fac Archaeol, NL-2333CC Leiden, Netherlands.
Humphrey, Louise (author)
Nat Hist Museum, Ctr Human Evolut Res, London SW7 5BD, England.
Menendez, Mario (author)
Univ Nacl Educac, Dept Prehist & Arqueol, Madrid 28040, Spain.,Univ Oklahoma, Dept Anthropol, Norman, OK 73019 USA.
Mihailovic, Dusan (author)
Univ Belgrade, Fac Philosophy, Dept Archaeol, Belgrade 11000, Serbia.
Peresani, Marco (author)
Univ Ferrara, Dept Humanities, I-44121 Ferrara, Italy.;CNR, Inst Environm Geol & Geoengn, I-20126 Milan, Lombardia, Italy.
Moroder, Sofia Rodriguez (author)
Clin Alboraya 10, Valencia 46010, Spain.
Roksandic, Mirjana (author)
Univ Winnipeg, Dept Anthropol, Winnipeg, MB R3T 3C7, Canada.
Rougier, Helene (author)
Calif State Univ Northridge, Dept Anthropol, Northridge, CA 91330 USA.
Sazelova, Sandra (author)
Czech Acad Sci, Inst Archaeol Brno, Brno 60200, Czech Republic.
Stock, Jay T. (author)
Western Univ, Dept Anthropol, London, ON N6A 5C2, Canada.;Max Planck Inst Sci Human Hist, Dept Archaeol, D-07745 Jena, Germany.;Univ Cambridge, McDonald Inst Archaeol Res, Cambridge CB2 3ER, England.
Straus, Lawrence Guy (author)
Univ New Mexico, Dept Anthropol, Albuquerque, NM 87131 USA.
Svoboda, Jiri (author)
Czech Acad Sci, Inst Archaeol Brno, Brno 60200, Czech Republic.;Masaryk Univ, Dept Anthropol, Brno 61137, Czech Republic.
Tessmann, Barbara (author)
Stiftung Preuss Kulturbesitz, Museum Vor & Fruhgeschichte Berlin, D-10117 Berlin, Germany.;Berliner Gesell Anthropol Ethnol & Urgeschichte, D-10117 Berlin, Germany.
Walker, Michael J. (author)
Univ Murcia, Dept Zool & Antropol Fis, Murcia 30100, Spain.
Power, Robert C. (author)
Ludwig Maximilians Univ Munchen, Inst Pre & Protohistor Archaeol & Archaeol Roman, D-80539 Munich, Germany.;Max Planck Inst Evolutionary Anthropol, Dept Human Evolut, D-04103 Leipzig, Germany.
Lewis, Cecil M. (author)
Univ Oklahoma, Dept Anthropol, Norman, OK 73019 USA.
Sankaranarayanan, Krithivasan (author)
Univ Oklahoma, Dept Microbiol & Plant Biol, Norman, OK 73019 USA.
Guschanski, Katerina, Dr. 1978- (author)
Uppsala universitet,Zooekologi,Science for Life Laboratory, SciLifeLab,Univ Edinburgh, Sch Biol Sci, Inst Evolutionary Biol, Edinburgh EH9 3FL, Midlothian, Scotland.
Wrangham, Richard W. (author)
Harvard Univ, Dept Human Evolutionary Biol, Cambridge, MA 02138 USA.
Dewhirst, Floyd E. (author)
Forsyth Inst, Dept Microbiol, Cambridge, MA 02142 USA.;Harvard Sch Dent Med, Oral Med Infect & Immun, Boston, MA 02115 USA.
Salazar-Garcia, Domingo C. (author)
Max Planck Inst Evolutionary Anthropol, Dept Human Evolut, D-04103 Leipzig, Germany.;Univ Pais Vasco Euskal Herriko Unibertsitatea, Basque Fdn Sci, Ikerbasque, Grp Invest Prehistoria IT 1223 19, Vitoria 01006, Spain.;Univ Valencia, Dept Prehist Hist & Arqueol, Valencia 46010, Spain.;Univ Cape Town, Dept Geol Sci, ZA-7701 Rondebosch, South Africa.
Krause, Johannes (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Max Planck Inst Evolutionary Anthropol, Dept Archaeogenet, D-04103 Leipzig, Germany.
Herbig, Alexander (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.
Warinner, Christina (author)
Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany.;Univ Oklahoma, Dept Anthropol, Norman, OK 73019 USA.;Harvard Univ, Dept Anthropol, Cambridge, MA 02138 USA.
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Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany;Ludwig Maximilians Univ Munchen, Inst Pre & Protohistor Archaeol & Archaeol Roman, D-80539 Munich, Germany. Max Planck Inst Sci Human Hist, Dept Archaeogenet, D-07745 Jena, Germany. (creator_code:org_t)
2021-05-10
2021
English.
In: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences (PNAS). - 0027-8424 .- 1091-6490. ; 118:20
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  • Journal article (peer-reviewed)
Abstract Subject headings
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  • The oral microbiome plays key roles in human biology, health, and disease, but little is known about the global diversity, variation, or evolution of this microbial community. To better understand the evolution and changing ecology of the human oral microbiome, we analyzed 124 dental biofilm metagenomes from humans, including Neanderthals and Late Pleistocene to present-day modern humans, chimpanzees, and gorillas, as well as New World howler monkeys for comparison. We find that a core microbiome of primarily biofilm structural taxa has been maintained throughout African hominid evolution, and these microbial groups are also shared with howler monkeys, suggesting that they have been important oral members since before the catarrhine-platyrrhine split ca. 40 Mya. However, community structure and individual microbial phylogenies do not closely reflect host relationships, and the dental biofilms of Homo and chimpanzees are distinguished by major taxonomic and functional differences. Reconstructing oral metagenomes from up to 100 thousand years ago, we show that the microbial profiles of both Neanderthals and modern humans are highly similar, sharing functional adaptations in nutrient metabolism. These include an apparent Homo-specific acquisition of salivary amylase-binding capability by oral streptococci, suggesting microbial coadaptation with host diet. We additionally find evidence of shared genetic diversity in the oral bacteria of Neanderthal and Upper Paleolithic modern humans that is not observed in later modern human populations. Differences in the oral microbiomes of African hominids provide insights into human evolution, the ancestral state of the human microbiome, and a temporal framework for understanding microbial health and disease.

Subject headings

NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Mikrobiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Microbiology (hsv//eng)

Keyword

dental calculus
microbiome
Neanderthal
primate
salivary amylase
Diversity of life

Publication and Content Type

ref (subject category)
art (subject category)

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