Modular markup for simulating vascular tumour growth

• In this paper we present preliminary results of the first application of TumorML being developed outside of the context of the Transatlantic TUmor Model Repositories project (TUMOR). Based on a domain-specific software framework for developing models to simulate vascular tumour growth, we have developed a corresponding domain-specific language (DSL) for use with the framework. The DSL script is directly embedded into TumorML model descriptions serving as an example of how within a single model description document, we can fully describe cancer models as functional components. We introduce the framework that our DSL orchestrates; show fragments of DSL script we have developed to describe tumour-induced angiogenesis; and how these functional model descriptions can be integrated and executed with TumorML markup. 

Ämnesord

NATURVETENSKAP  -- Data- och informationsvetenskap -- Programvaruteknik (hsv//swe)

NATURAL SCIENCES  -- Computer and Information Sciences -- Software Engineering (hsv//eng)

NATURVETENSKAP  -- Data- och informationsvetenskap -- Bioinformatik (hsv//swe)

NATURAL SCIENCES  -- Computer and Information Sciences -- Bioinformatics (hsv//eng)

Nyckelord

Bioinformatics

Bioinformatik

Publikations- och innehållstyp

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